jgi.p|Nanoce1779_2|552171, mRNA_2441 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|552171
Unique NamemRNA_2441
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length328
Alignment locationscaffold_5:354813..355140 -

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Properties
Property NameValue
TranscriptId552257
TrackFilteredModels2
ProteinId552171
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:354813..355140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552171gene_2441Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552171mRNA_2441-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2441CDS_2441Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2441 ID=mRNA_2441|Name=jgi.p|Nanoce1779_2|552171|organism=Nannochloropsis oceanica|type=mRNA|length=328bp
AGCACGAGGCCATGGCACAATGGTGCCCGAAGGGTCGCCTCTTCCCTACT
TCCCTGTATCTCCTTCTCCTCCTCCTTTTCCTCCTCCACCTCCAACTTTT
AGCCGCGACCGCTGGTGAGTGGAATGGAAAGGGACAGTTCGGAAACAGGA
AGATAAAGTAGAGGGGGAAAGGATGCAAGATTAAGGATGATAAGGAGGAC
AGGAGTCAAGATGAGGGCGGTCCGTTTTGGCATGCAGGCTCACGGTAACA
GGGCACTCATCCTTGATTCCTTGCTCCTCTCTCCCTCTCACTCGCTCCAC
TCCCAGATGCAAGTCAAGCTCAATTTTG
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protein sequence of jgi.p|Nanoce1779_2|552171

>mRNA_2441-protein ID=mRNA_2441-protein|Name=jgi.p|Nanoce1779_2|552171|organism=Nannochloropsis oceanica|type=polypeptide|length=50bp
MAQWCPKGRLFPTSLYLLLLLLFLLHLQLLAATAGEWNGKGQFGNRKIK*
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mRNA from alignment at scaffold_5:354813..355140-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2441 ID=mRNA_2441|Name=jgi.p|Nanoce1779_2|552171|organism=Nannochloropsis oceanica|type=mRNA|length=328bp|location=Sequence derived from alignment at scaffold_5:354813..355140- (Nannochloropsis oceanica)
AGCACGAGGCCATGGCACAATGGTGCCCGAAGGGTCGCCTCTTCCCTACT
TCCCTGTATCTCCTTCTCCTCCTCCTTTTCCTCCTCCACCTCCAACTTTT
AGCCGCGACCGCTGGTGAGTGGAATGGAAAGGGACAGTTCGGAAACAGGA
AGATAAAGTAGAGGGGGAAAGGATGCAAGATTAAGGATGATAAGGAGGAC
AGGAGTCAAGATGAGGGCGGTCCGTTTTGGCATGCAGGCTCACGGTAACA
GGGCACTCATCCTTGATTCCTTGCTCCTCTCTCCCTCTCACTCGCTCCAC
TCCCAGATGCAAGTCAAGCTCAATTTTG
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Coding sequence (CDS) from alignment at scaffold_5:354813..355140-

>mRNA_2441 ID=mRNA_2441|Name=jgi.p|Nanoce1779_2|552171|organism=Nannochloropsis oceanica|type=CDS|length=150bp|location=Sequence derived from alignment at scaffold_5:354813..355140- (Nannochloropsis oceanica)
ATGGCACAATGGTGCCCGAAGGGTCGCCTCTTCCCTACTTCCCTGTATCT
CCTTCTCCTCCTCCTTTTCCTCCTCCACCTCCAACTTTTAGCCGCGACCG
CTGGTGAGTGGAATGGAAAGGGACAGTTCGGAAACAGGAAGATAAAGTAG
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Synonyms
Publications