jgi.p|Nanoce1779_2|516834, mRNA_244 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|516834
Unique NamemRNA_244
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1125
Alignment locationscaffold_3:615017..616141 -

Link to JBrowse

Properties
Property NameValue
TranscriptId516920
TrackFilteredModels2
ProteinId516834
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:615017..616141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|516834gene_244Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_244CDS_244Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|516834mRNA_244-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_244 ID=mRNA_244|Name=jgi.p|Nanoce1779_2|516834|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp
ATGCTGGGCTTTCGCCGCCAGAGCAAGCGGGACCGCGGTATGTCCATTCG
CAACCTCTCACACGAGGGCGTTGAAGAGAGTAGAAACCTGTGGCACACCG
GGGGGGCTCCGGCTCGTCTGGGTAAGACGCACAAGCCCGTAGTCCTTGTT
ATGGGAGACTCGCATACGCAAGGCATGTACGGGGCCTGTTATGTCAAACT
GCTCCAAGCCAAGTTTCCTAAGTTTCACATCGTCAACGGAGGCCGGAATG
GCGAAGTCCTGGAAAGCATTCGAAGACGTACTGGCTCTTACCTCAAGACG
TATGGTGGTGACATAGTGGGGGTCATTATCCTAGGCGGCACCAACGACTG
TCTCGCCAACCTCAATTCCTCGACACGGACGCTCATTCGTCTATATAACC
CTTTTTTGAAGGAACTCCCACCCCTGACCGAGTACACCAAGACGTTACAC
AAGCTTTTGGCCATGATTTACTCGCATTCGGCCTCTTCTTACATCGATAT
TTGCTGCGTGACCCCGCCAATTATCGCTGAGTTTCCTAGCTCTCCTGAAA
ACGTGGTGGTGGATAGTCTGTGTGAGGCCATCCGGAAGACAGTGCGCGAT
TTCACGCACGTTAAGAACGAGAACGTGCGCGCCCGGGGGTCATCTGACAG
CCTGGAAAAGAGTGCTGGGACAACTGGAAGAATTCATGGGGTGATTAGCA
TCAGCATTGAGGAGAATGTGGAAGTGCAAGATGGCAAAGCTCATAAGCAA
CAGCAGCAGAAGCAGCAGCAACAGCAGTCGCTTCAGCCTACGCATTCCCT
TATCAACTATTCTTCTCACCACAGATACTGCCCTTCCACATCTGCCCTTT
TCCCTTCGTCTTCATGCTTTGGAAACTCCAAGCATCCCAAACCGCGGCTA
CGTCGTCGTTTGCACTGCATCGATTTTAACGCGCGGATGAAACGACATCT
GGAGGAAGTGCTTGGTCATAAAACGCGCAAAGCATTTGAGCCCGACTTTT
TTAATATGTGTTTCAATAGCGGGATGAGCTTGTTAAGCGGGGCTTTGGTG
AAATGGGACACAGTGTCGGCAGCTCGGGGATTGGCGCTGCACAACGACGG
CGTGCACTTGAATGAAAGGGCGATC
back to top

protein sequence of jgi.p|Nanoce1779_2|516834

>mRNA_244-protein ID=mRNA_244-protein|Name=jgi.p|Nanoce1779_2|516834|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MLGFRRQSKRDRGMSIRNLSHEGVEESRNLWHTGGAPARLGKTHKPVVLV
MGDSHTQGMYGACYVKLLQAKFPKFHIVNGGRNGEVLESIRRRTGSYLKT
YGGDIVGVIILGGTNDCLANLNSSTRTLIRLYNPFLKELPPLTEYTKTLH
KLLAMIYSHSASSYIDICCVTPPIIAEFPSSPENVVVDSLCEAIRKTVRD
FTHVKNENVRARGSSDSLEKSAGTTGRIHGVISISIEENVEVQDGKAHKQ
QQQKQQQQQSLQPTHSLINYSSHHRYCPSTSALFPSSSCFGNSKHPKPRL
RRRLHCIDFNARMKRHLEEVLGHKTRKAFEPDFFNMCFNSGMSLLSGALV
KWDTVSAARGLALHNDGVHLNERAI
back to top

mRNA from alignment at scaffold_3:615017..616141-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_244 ID=mRNA_244|Name=jgi.p|Nanoce1779_2|516834|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp|location=Sequence derived from alignment at scaffold_3:615017..616141- (Nannochloropsis oceanica)
ATGCTGGGCTTTCGCCGCCAGAGCAAGCGGGACCGCGGTATGTCCATTCG
CAACCTCTCACACGAGGGCGTTGAAGAGAGTAGAAACCTGTGGCACACCG
GGGGGGCTCCGGCTCGTCTGGGTAAGACGCACAAGCCCGTAGTCCTTGTT
ATGGGAGACTCGCATACGCAAGGCATGTACGGGGCCTGTTATGTCAAACT
GCTCCAAGCCAAGTTTCCTAAGTTTCACATCGTCAACGGAGGCCGGAATG
GCGAAGTCCTGGAAAGCATTCGAAGACGTACTGGCTCTTACCTCAAGACG
TATGGTGGTGACATAGTGGGGGTCATTATCCTAGGCGGCACCAACGACTG
TCTCGCCAACCTCAATTCCTCGACACGGACGCTCATTCGTCTATATAACC
CTTTTTTGAAGGAACTCCCACCCCTGACCGAGTACACCAAGACGTTACAC
AAGCTTTTGGCCATGATTTACTCGCATTCGGCCTCTTCTTACATCGATAT
TTGCTGCGTGACCCCGCCAATTATCGCTGAGTTTCCTAGCTCTCCTGAAA
ACGTGGTGGTGGATAGTCTGTGTGAGGCCATCCGGAAGACAGTGCGCGAT
TTCACGCACGTTAAGAACGAGAACGTGCGCGCCCGGGGGTCATCTGACAG
CCTGGAAAAGAGTGCTGGGACAACTGGAAGAATTCATGGGGTGATTAGCA
TCAGCATTGAGGAGAATGTGGAAGTGCAAGATGGCAAAGCTCATAAGCAA
CAGCAGCAGAAGCAGCAGCAACAGCAGTCGCTTCAGCCTACGCATTCCCT
TATCAACTATTCTTCTCACCACAGATACTGCCCTTCCACATCTGCCCTTT
TCCCTTCGTCTTCATGCTTTGGAAACTCCAAGCATCCCAAACCGCGGCTA
CGTCGTCGTTTGCACTGCATCGATTTTAACGCGCGGATGAAACGACATCT
GGAGGAAGTGCTTGGTCATAAAACGCGCAAAGCATTTGAGCCCGACTTTT
TTAATATGTGTTTCAATAGCGGGATGAGCTTGTTAAGCGGGGCTTTGGTG
AAATGGGACACAGTGTCGGCAGCTCGGGGATTGGCGCTGCACAACGACGG
CGTGCACTTGAATGAAAGGGCGATC
back to top

Coding sequence (CDS) from alignment at scaffold_3:615017..616141-

>mRNA_244 ID=mRNA_244|Name=jgi.p|Nanoce1779_2|516834|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at scaffold_3:615017..616141- (Nannochloropsis oceanica)
ATGCTGGGCTTTCGCCGCCAGAGCAAGCGGGACCGCGGTATGTCCATTCG
CAACCTCTCACACGAGGGCGTTGAAGAGAGTAGAAACCTGTGGCACACCG
GGGGGGCTCCGGCTCGTCTGGGTAAGACGCACAAGCCCGTAGTCCTTGTT
ATGGGAGACTCGCATACGCAAGGCATGTACGGGGCCTGTTATGTCAAACT
GCTCCAAGCCAAGTTTCCTAAGTTTCACATCGTCAACGGAGGCCGGAATG
GCGAAGTCCTGGAAAGCATTCGAAGACGTACTGGCTCTTACCTCAAGACG
TATGGTGGTGACATAGTGGGGGTCATTATCCTAGGCGGCACCAACGACTG
TCTCGCCAACCTCAATTCCTCGACACGGACGCTCATTCGTCTATATAACC
CTTTTTTGAAGGAACTCCCACCCCTGACCGAGTACACCAAGACGTTACAC
AAGCTTTTGGCCATGATTTACTCGCATTCGGCCTCTTCTTACATCGATAT
TTGCTGCGTGACCCCGCCAATTATCGCTGAGTTTCCTAGCTCTCCTGAAA
ACGTGGTGGTGGATAGTCTGTGTGAGGCCATCCGGAAGACAGTGCGCGAT
TTCACGCACGTTAAGAACGAGAACGTGCGCGCCCGGGGGTCATCTGACAG
CCTGGAAAAGAGTGCTGGGACAACTGGAAGAATTCATGGGGTGATTAGCA
TCAGCATTGAGGAGAATGTGGAAGTGCAAGATGGCAAAGCTCATAAGCAA
CAGCAGCAGAAGCAGCAGCAACAGCAGTCGCTTCAGCCTACGCATTCCCT
TATCAACTATTCTTCTCACCACAGATACTGCCCTTCCACATCTGCCCTTT
TCCCTTCGTCTTCATGCTTTGGAAACTCCAAGCATCCCAAACCGCGGCTA
CGTCGTCGTTTGCACTGCATCGATTTTAACGCGCGGATGAAACGACATCT
GGAGGAAGTGCTTGGTCATAAAACGCGCAAAGCATTTGAGCCCGACTTTT
TTAATATGTGTTTCAATAGCGGGATGAGCTTGTTAAGCGGGGCTTTGGTG
AAATGGGACACAGTGTCGGCAGCTCGGGGATTGGCGCTGCACAACGACGG
CGTGCACTTGAATGAAAGGGCGATC
back to top
Synonyms
Publications