jgi.p|Nanoce1779_2|563984, mRNA_2439 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|563984
Unique NamemRNA_2439
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length558
Alignment locationscaffold_5:351713..352270 -

Link to JBrowse

Properties
Property NameValue
TranscriptId564070
TrackFilteredModels2
ProteinId563984
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:351713..352270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563984gene_2439Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2439CDS_2439Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563984mRNA_2439-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2439 ID=mRNA_2439|Name=jgi.p|Nanoce1779_2|563984|organism=Nannochloropsis oceanica|type=mRNA|length=558bp
ATGGCCTCATTCTCTCCTTCCCTCCTTCCCTCCCTCCCTCCCTCTCCTAG
GGCTTCCGCAGTCACACCAGCTTCTCTCGTCATGTTGAATGGCCACATCA
CCCACCAGCAGGAGCAGCGGCGGGAGCGGCGACAGCAGGAGCAGCGGCGG
GAGCGGCGGCAGCAAGAGCAGCAAGAGCACTTTCACACCGTGGCATACGC
AGGGGAAAACGCCAACAAAAGAGGAGAAGGAGGAGGAGGAGGGATGATGC
AGGTAGGGGAGGAAGAAGGGGGAGCTTCAGCGGCCTTCCATGACACAGTT
GGCATGGCCTTTAGCCGTATGTTCGATGCATGCACGAATGTGGTGCAGAC
AGCGGAGACACACACAATGCAAGCCTTACAACACATGAACCAGCAGCTCG
CGTCGGCGACGAGGGAGAAGAAGGAGGTGGAGGGGCAGCTGCAGGCGCTC
CTCCGGGTATTGGAGGAGAATAAGAGGGCCGTCCTGGTGATCTATGAGGG
GATAGGGGGGGGTTTGGAGGAAGTAAATGAGAGAGGAAGGGAAGGGGACT
TGGAGTAA
back to top

protein sequence of jgi.p|Nanoce1779_2|563984

>mRNA_2439-protein ID=mRNA_2439-protein|Name=jgi.p|Nanoce1779_2|563984|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MASFSPSLLPSLPPSPRASAVTPASLVMLNGHITHQQEQRRERRQQEQRR
ERRQQEQQEHFHTVAYAGENANKRGEGGGGGMMQVGEEEGGASAAFHDTV
GMAFSRMFDACTNVVQTAETHTMQALQHMNQQLASATREKKEVEGQLQAL
LRVLEENKRAVLVIYEGIGGGLEEVNERGREGDLE*
back to top

mRNA from alignment at scaffold_5:351713..352270-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2439 ID=mRNA_2439|Name=jgi.p|Nanoce1779_2|563984|organism=Nannochloropsis oceanica|type=mRNA|length=558bp|location=Sequence derived from alignment at scaffold_5:351713..352270- (Nannochloropsis oceanica)
ATGGCCTCATTCTCTCCTTCCCTCCTTCCCTCCCTCCCTCCCTCTCCTAG
GGCTTCCGCAGTCACACCAGCTTCTCTCGTCATGTTGAATGGCCACATCA
CCCACCAGCAGGAGCAGCGGCGGGAGCGGCGACAGCAGGAGCAGCGGCGG
GAGCGGCGGCAGCAAGAGCAGCAAGAGCACTTTCACACCGTGGCATACGC
AGGGGAAAACGCCAACAAAAGAGGAGAAGGAGGAGGAGGAGGGATGATGC
AGGTAGGGGAGGAAGAAGGGGGAGCTTCAGCGGCCTTCCATGACACAGTT
GGCATGGCCTTTAGCCGTATGTTCGATGCATGCACGAATGTGGTGCAGAC
AGCGGAGACACACACAATGCAAGCCTTACAACACATGAACCAGCAGCTCG
CGTCGGCGACGAGGGAGAAGAAGGAGGTGGAGGGGCAGCTGCAGGCGCTC
CTCCGGGTATTGGAGGAGAATAAGAGGGCCGTCCTGGTGATCTATGAGGG
GATAGGGGGGGGTTTGGAGGAAGTAAATGAGAGAGGAAGGGAAGGGGACT
TGGAGTAA
back to top

Coding sequence (CDS) from alignment at scaffold_5:351713..352270-

>mRNA_2439 ID=mRNA_2439|Name=jgi.p|Nanoce1779_2|563984|organism=Nannochloropsis oceanica|type=CDS|length=558bp|location=Sequence derived from alignment at scaffold_5:351713..352270- (Nannochloropsis oceanica)
ATGGCCTCATTCTCTCCTTCCCTCCTTCCCTCCCTCCCTCCCTCTCCTAG
GGCTTCCGCAGTCACACCAGCTTCTCTCGTCATGTTGAATGGCCACATCA
CCCACCAGCAGGAGCAGCGGCGGGAGCGGCGACAGCAGGAGCAGCGGCGG
GAGCGGCGGCAGCAAGAGCAGCAAGAGCACTTTCACACCGTGGCATACGC
AGGGGAAAACGCCAACAAAAGAGGAGAAGGAGGAGGAGGAGGGATGATGC
AGGTAGGGGAGGAAGAAGGGGGAGCTTCAGCGGCCTTCCATGACACAGTT
GGCATGGCCTTTAGCCGTATGTTCGATGCATGCACGAATGTGGTGCAGAC
AGCGGAGACACACACAATGCAAGCCTTACAACACATGAACCAGCAGCTCG
CGTCGGCGACGAGGGAGAAGAAGGAGGTGGAGGGGCAGCTGCAGGCGCTC
CTCCGGGTATTGGAGGAGAATAAGAGGGCCGTCCTGGTGATCTATGAGGG
GATAGGGGGGGGTTTGGAGGAAGTAAATGAGAGAGGAAGGGAAGGGGACT
TGGAGTAA
back to top
Synonyms
Publications