jgi.p|Nanoce1779_2|669042, mRNA_2438 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|669042
Unique NamemRNA_2438
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length827
Alignment locationscaffold_5:350430..351256 +

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Properties
Property NameValue
TranscriptId669128
TrackFilteredModels2
ProteinId669042
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:350430..351256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669042gene_2438Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669042mRNA_2438-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2438CDS_2438Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2438 ID=mRNA_2438|Name=jgi.p|Nanoce1779_2|669042|organism=Nannochloropsis oceanica|type=mRNA|length=827bp
GGGGGGAGGAGGAAGAAGAGGAGGACGACGACGGGGAAGGGGATGAGGAG
GGGGCAGGGGGGGAGTTGGAGTTGGAGGAGGAGGAGTTGGAGGAGGAGGA
GGAGGAAGGAGGGAGTGGTGGATGGAGGAGGGAGAGTGCATTAGAGGAGA
AGATGTTGGAGGAACTCTACGCCCTGGACTATGAGGACATGATCGGGGAT
TTGCCTTGTCGGTTTAAGTACCGGAAGGTGGAGGGCAACTCGTATGGTTT
GACAGCGGAGGAGATTCTTGCGGCGGATGATCAGGAGCTGAATCGATTTG
TGAGTTTGAAGAAATTGAGTACCTACAGGGAGGAGGAGTACAGACCCAAA
AGCAAGCAACGGCACCGTTTCCGCGAGGCGTTGAAAAAGAAGAGGAGGGA
AGAGGAAGAGGAGAAGGAGAGGAGGCAGAGGAAGGCGAGGGAGGCGAAGG
AGGGGGGTGAGAAGAAAGGGAGGAGGAAGAAACAAGATGGCAAGGAGGGG
GAGAAGGATGGAAGGGGAGGGGAGGAGGTGGCTGTGGATGCTGCTGTGGC
AAAGGGGGTGGGAGGCATGAAGGAGGATCTGGGGCAGCAACAGAAGCAGG
AGCAGCAGCCACAGCAACTGCAGCAGGGCGAGAGCAAGAAGCGCAAGAGG
AAGAAGAAGAAGGAAAAAGGTGGTGGGGGGCGCGGAGGGGGGGGGAGGAG
GGGGAGTAGGAGGGAGAGGAGCAGTGCCAGAAGGAGCGAAAAAAACTGCC
GGCCAGTCGCTTGGCGGCCTATGGCCTGGCCTGAGTATCTTAACAATCGA
CCCAAACACAGCAAATATCAAATTTAA
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protein sequence of jgi.p|Nanoce1779_2|669042

>mRNA_2438-protein ID=mRNA_2438-protein|Name=jgi.p|Nanoce1779_2|669042|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MLEELYALDYEDMIGDLPCRFKYRKVEGNSYGLTAEEILAADDQELNRFV
SLKKLSTYREEEYRPKSKQRHRFREALKKKRREEEEEKERRQRKAREAKE
GGEKKGRRKKQDGKEGEKDGRGGEEVAVDAAVAKGVGGMKEDLGQQQKQE
QQPQQLQQGESKKRKRKKKKEKGGGGRGGGGRRGSRRERSSARRSEKNCR
PVAWRPMAWPEYLNNRPKHSKYQI*
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mRNA from alignment at scaffold_5:350430..351256+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2438 ID=mRNA_2438|Name=jgi.p|Nanoce1779_2|669042|organism=Nannochloropsis oceanica|type=mRNA|length=827bp|location=Sequence derived from alignment at scaffold_5:350430..351256+ (Nannochloropsis oceanica)
GGGGGGAGGAGGAAGAAGAGGAGGACGACGACGGGGAAGGGGATGAGGAG
GGGGCAGGGGGGGAGTTGGAGTTGGAGGAGGAGGAGTTGGAGGAGGAGGA
GGAGGAAGGAGGGAGTGGTGGATGGAGGAGGGAGAGTGCATTAGAGGAGA
AGATGTTGGAGGAACTCTACGCCCTGGACTATGAGGACATGATCGGGGAT
TTGCCTTGTCGGTTTAAGTACCGGAAGGTGGAGGGCAACTCGTATGGTTT
GACAGCGGAGGAGATTCTTGCGGCGGATGATCAGGAGCTGAATCGATTTG
TGAGTTTGAAGAAATTGAGTACCTACAGGGAGGAGGAGTACAGACCCAAA
AGCAAGCAACGGCACCGTTTCCGCGAGGCGTTGAAAAAGAAGAGGAGGGA
AGAGGAAGAGGAGAAGGAGAGGAGGCAGAGGAAGGCGAGGGAGGCGAAGG
AGGGGGGTGAGAAGAAAGGGAGGAGGAAGAAACAAGATGGCAAGGAGGGG
GAGAAGGATGGAAGGGGAGGGGAGGAGGTGGCTGTGGATGCTGCTGTGGC
AAAGGGGGTGGGAGGCATGAAGGAGGATCTGGGGCAGCAACAGAAGCAGG
AGCAGCAGCCACAGCAACTGCAGCAGGGCGAGAGCAAGAAGCGCAAGAGG
AAGAAGAAGAAGGAAAAAGGTGGTGGGGGGCGCGGAGGGGGGGGGAGGAG
GGGGAGTAGGAGGGAGAGGAGCAGTGCCAGAAGGAGCGAAAAAAACTGCC
GGCCAGTCGCTTGGCGGCCTATGGCCTGGCCTGAGTATCTTAACAATCGA
CCCAAACACAGCAAATATCAAATTTAA
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Coding sequence (CDS) from alignment at scaffold_5:350430..351256+

>mRNA_2438 ID=mRNA_2438|Name=jgi.p|Nanoce1779_2|669042|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_5:350430..351256+ (Nannochloropsis oceanica)
ATGTTGGAGGAACTCTACGCCCTGGACTATGAGGACATGATCGGGGATTT
GCCTTGTCGGTTTAAGTACCGGAAGGTGGAGGGCAACTCGTATGGTTTGA
CAGCGGAGGAGATTCTTGCGGCGGATGATCAGGAGCTGAATCGATTTGTG
AGTTTGAAGAAATTGAGTACCTACAGGGAGGAGGAGTACAGACCCAAAAG
CAAGCAACGGCACCGTTTCCGCGAGGCGTTGAAAAAGAAGAGGAGGGAAG
AGGAAGAGGAGAAGGAGAGGAGGCAGAGGAAGGCGAGGGAGGCGAAGGAG
GGGGGTGAGAAGAAAGGGAGGAGGAAGAAACAAGATGGCAAGGAGGGGGA
GAAGGATGGAAGGGGAGGGGAGGAGGTGGCTGTGGATGCTGCTGTGGCAA
AGGGGGTGGGAGGCATGAAGGAGGATCTGGGGCAGCAACAGAAGCAGGAG
CAGCAGCCACAGCAACTGCAGCAGGGCGAGAGCAAGAAGCGCAAGAGGAA
GAAGAAGAAGGAAAAAGGTGGTGGGGGGCGCGGAGGGGGGGGGAGGAGGG
GGAGTAGGAGGGAGAGGAGCAGTGCCAGAAGGAGCGAAAAAAACTGCCGG
CCAGTCGCTTGGCGGCCTATGGCCTGGCCTGAGTATCTTAACAATCGACC
CAAACACAGCAAATATCAAATTTAA
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Synonyms
Publications