jgi.p|Nanoce1779_2|524870, mRNA_2436 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|524870
Unique NamemRNA_2436
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1560
Alignment locationscaffold_5:346566..348125 -

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Properties
Property NameValue
TranscriptId524956
TrackFilteredModels2
ProteinId524870
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:346566..348125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524870gene_2436Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2436CDS_2436Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524870mRNA_2436-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2436 ID=mRNA_2436|Name=jgi.p|Nanoce1779_2|524870|organism=Nannochloropsis oceanica|type=mRNA|length=1560bp
ATGGTAGCTCCCTCCACGACAAGCACCAGCAGCGGCAATGACCCCAGCCA
GTACATACACCTTCCCATTTCCCTCCTCCCCTCCTCATTTCCAAAGCAAG
CTTTCGAAGACGTCGTGGCCGCTGCTCCCGTTTTCAACATACTGGTTGAC
CGCCTCAGCCGCGACAAGGATTACCTGAACAGTGCTTTGGGCGAAGTTAG
CAAAAGCGATGAGTTTACCGGCCGGCTCTTGAAGATGTACAACGAGGTGT
ACCCCTCTGGTGTGTCGGCCTCGGCGCAACCGGTTGCATTGGGATTGCAT
CGCTCGGATTACATGATTGATGACAGCATTGCTGGTGCCGCTGCAGGTCT
CAGCGCAAAGAAACAATTGTTGCAAGTGGAATTGAATACCATTGCATCAT
CTTTTGGGTGCTTAGCCTCAGTCACGGCCGACCTCCATCGGTACCTGCTC
GAACGCTTCTTCCTCCCCTCCCTCGCCCTTCAGCCCCCCTGCTCTTCCTC
CGTCCCCGACGAACTCCAATCTTTTCTCTCCTCCTACCTCTACAACCACG
GTCTCGTCCTCCCCCCTTCCACCACTCCTTCCGAAGCCGCTGCCGCCGCC
ATGGCCAACCTCCCCCCTAACCCAACCCTGGTACGGCTTCCCTCCGCCCT
GGCCAAAGCCCACGACTACTATAACAATCCTTCCGGCATCATAGTCTTCA
TCGTCCAGCCCGGGGAGCGGAATCTCTTCGATCAACGATTTTTAGAACTG
ATCCTGTGGGAGAAATACCACAAGCAGGTCGTGCGTCTCTCTTTGGAGGA
AGTGACCGCACGCTGCGAGCTGAGACACCGAGGAGGCACTAACGCGATGG
TCCTTGATGGTCAACATGAAGTATCCGTGGTGTATTTCCGTGCAGGGTAC
ACACCAGTGGATTACCCGTCGGAGAGAGCGTGGGAGGCCAGGGCGATGAT
CGAGAGGTCGGCAGCTGTGAAATGCCCGACGTTAGGGTACCAGTTGGCGG
GCACCAAAAAAGTGCAGCAACTGCTTTGTGCACCACAGGCCCTCGGGAGA
TTTCTGAGCAAGGAGCAGTGTGCGGTGGCACAGCGGCATTTCACGGGCTT
GTATGGTCTGGGGCAGGAGGAGCTGAAGGAGGAGAGGGGGTTGTCTGCCA
CGGCAGTGAGGGCCGCGATTGCGAATCCACAAGCCTACGTTCTGAAGCCA
CAGAGGGAGGGAGGCGGGAATAATTTTTATGACGAGGAATTGAAGACGGC
GTTGGAGACCTGGTCACCCGATAAGTTGTCGGGACATATATTGATGCAAC
GGATACAGGCGCCGGCGCGAAATGCGTATCTGATGAGGGAGGGGAAGGTG
GTGGTGGGTCCGGCAGTGAGTGAATTGGGTGTTTTCAGTACCTTCCTGGG
TGATGCGTCGGCCGGGGAGGACGGGGAGGAAGGGAAGGGAGGCGTGCAGG
TGAATAGCTATGCAGGATACAACGTAAGGACGAAGCTGGCGACTGTTAAT
GAGGGAGGGGTGGCGACGGGCTTTGCGGTGCTGGACAGTCCCATGCTGGT
GGATGAATGA
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protein sequence of jgi.p|Nanoce1779_2|524870

>mRNA_2436-protein ID=mRNA_2436-protein|Name=jgi.p|Nanoce1779_2|524870|organism=Nannochloropsis oceanica|type=polypeptide|length=520bp
MVAPSTTSTSSGNDPSQYIHLPISLLPSSFPKQAFEDVVAAAPVFNILVD
RLSRDKDYLNSALGEVSKSDEFTGRLLKMYNEVYPSGVSASAQPVALGLH
RSDYMIDDSIAGAAAGLSAKKQLLQVELNTIASSFGCLASVTADLHRYLL
ERFFLPSLALQPPCSSSVPDELQSFLSSYLYNHGLVLPPSTTPSEAAAAA
MANLPPNPTLVRLPSALAKAHDYYNNPSGIIVFIVQPGERNLFDQRFLEL
ILWEKYHKQVVRLSLEEVTARCELRHRGGTNAMVLDGQHEVSVVYFRAGY
TPVDYPSERAWEARAMIERSAAVKCPTLGYQLAGTKKVQQLLCAPQALGR
FLSKEQCAVAQRHFTGLYGLGQEELKEERGLSATAVRAAIANPQAYVLKP
QREGGGNNFYDEELKTALETWSPDKLSGHILMQRIQAPARNAYLMREGKV
VVGPAVSELGVFSTFLGDASAGEDGEEGKGGVQVNSYAGYNVRTKLATVN
EGGVATGFAVLDSPMLVDE*
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mRNA from alignment at scaffold_5:346566..348125-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2436 ID=mRNA_2436|Name=jgi.p|Nanoce1779_2|524870|organism=Nannochloropsis oceanica|type=mRNA|length=1560bp|location=Sequence derived from alignment at scaffold_5:346566..348125- (Nannochloropsis oceanica)
ATGGTAGCTCCCTCCACGACAAGCACCAGCAGCGGCAATGACCCCAGCCA
GTACATACACCTTCCCATTTCCCTCCTCCCCTCCTCATTTCCAAAGCAAG
CTTTCGAAGACGTCGTGGCCGCTGCTCCCGTTTTCAACATACTGGTTGAC
CGCCTCAGCCGCGACAAGGATTACCTGAACAGTGCTTTGGGCGAAGTTAG
CAAAAGCGATGAGTTTACCGGCCGGCTCTTGAAGATGTACAACGAGGTGT
ACCCCTCTGGTGTGTCGGCCTCGGCGCAACCGGTTGCATTGGGATTGCAT
CGCTCGGATTACATGATTGATGACAGCATTGCTGGTGCCGCTGCAGGTCT
CAGCGCAAAGAAACAATTGTTGCAAGTGGAATTGAATACCATTGCATCAT
CTTTTGGGTGCTTAGCCTCAGTCACGGCCGACCTCCATCGGTACCTGCTC
GAACGCTTCTTCCTCCCCTCCCTCGCCCTTCAGCCCCCCTGCTCTTCCTC
CGTCCCCGACGAACTCCAATCTTTTCTCTCCTCCTACCTCTACAACCACG
GTCTCGTCCTCCCCCCTTCCACCACTCCTTCCGAAGCCGCTGCCGCCGCC
ATGGCCAACCTCCCCCCTAACCCAACCCTGGTACGGCTTCCCTCCGCCCT
GGCCAAAGCCCACGACTACTATAACAATCCTTCCGGCATCATAGTCTTCA
TCGTCCAGCCCGGGGAGCGGAATCTCTTCGATCAACGATTTTTAGAACTG
ATCCTGTGGGAGAAATACCACAAGCAGGTCGTGCGTCTCTCTTTGGAGGA
AGTGACCGCACGCTGCGAGCTGAGACACCGAGGAGGCACTAACGCGATGG
TCCTTGATGGTCAACATGAAGTATCCGTGGTGTATTTCCGTGCAGGGTAC
ACACCAGTGGATTACCCGTCGGAGAGAGCGTGGGAGGCCAGGGCGATGAT
CGAGAGGTCGGCAGCTGTGAAATGCCCGACGTTAGGGTACCAGTTGGCGG
GCACCAAAAAAGTGCAGCAACTGCTTTGTGCACCACAGGCCCTCGGGAGA
TTTCTGAGCAAGGAGCAGTGTGCGGTGGCACAGCGGCATTTCACGGGCTT
GTATGGTCTGGGGCAGGAGGAGCTGAAGGAGGAGAGGGGGTTGTCTGCCA
CGGCAGTGAGGGCCGCGATTGCGAATCCACAAGCCTACGTTCTGAAGCCA
CAGAGGGAGGGAGGCGGGAATAATTTTTATGACGAGGAATTGAAGACGGC
GTTGGAGACCTGGTCACCCGATAAGTTGTCGGGACATATATTGATGCAAC
GGATACAGGCGCCGGCGCGAAATGCGTATCTGATGAGGGAGGGGAAGGTG
GTGGTGGGTCCGGCAGTGAGTGAATTGGGTGTTTTCAGTACCTTCCTGGG
TGATGCGTCGGCCGGGGAGGACGGGGAGGAAGGGAAGGGAGGCGTGCAGG
TGAATAGCTATGCAGGATACAACGTAAGGACGAAGCTGGCGACTGTTAAT
GAGGGAGGGGTGGCGACGGGCTTTGCGGTGCTGGACAGTCCCATGCTGGT
GGATGAATGA
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Coding sequence (CDS) from alignment at scaffold_5:346566..348125-

>mRNA_2436 ID=mRNA_2436|Name=jgi.p|Nanoce1779_2|524870|organism=Nannochloropsis oceanica|type=CDS|length=1560bp|location=Sequence derived from alignment at scaffold_5:346566..348125- (Nannochloropsis oceanica)
ATGGTAGCTCCCTCCACGACAAGCACCAGCAGCGGCAATGACCCCAGCCA
GTACATACACCTTCCCATTTCCCTCCTCCCCTCCTCATTTCCAAAGCAAG
CTTTCGAAGACGTCGTGGCCGCTGCTCCCGTTTTCAACATACTGGTTGAC
CGCCTCAGCCGCGACAAGGATTACCTGAACAGTGCTTTGGGCGAAGTTAG
CAAAAGCGATGAGTTTACCGGCCGGCTCTTGAAGATGTACAACGAGGTGT
ACCCCTCTGGTGTGTCGGCCTCGGCGCAACCGGTTGCATTGGGATTGCAT
CGCTCGGATTACATGATTGATGACAGCATTGCTGGTGCCGCTGCAGGTCT
CAGCGCAAAGAAACAATTGTTGCAAGTGGAATTGAATACCATTGCATCAT
CTTTTGGGTGCTTAGCCTCAGTCACGGCCGACCTCCATCGGTACCTGCTC
GAACGCTTCTTCCTCCCCTCCCTCGCCCTTCAGCCCCCCTGCTCTTCCTC
CGTCCCCGACGAACTCCAATCTTTTCTCTCCTCCTACCTCTACAACCACG
GTCTCGTCCTCCCCCCTTCCACCACTCCTTCCGAAGCCGCTGCCGCCGCC
ATGGCCAACCTCCCCCCTAACCCAACCCTGGTACGGCTTCCCTCCGCCCT
GGCCAAAGCCCACGACTACTATAACAATCCTTCCGGCATCATAGTCTTCA
TCGTCCAGCCCGGGGAGCGGAATCTCTTCGATCAACGATTTTTAGAACTG
ATCCTGTGGGAGAAATACCACAAGCAGGTCGTGCGTCTCTCTTTGGAGGA
AGTGACCGCACGCTGCGAGCTGAGACACCGAGGAGGCACTAACGCGATGG
TCCTTGATGGTCAACATGAAGTATCCGTGGTGTATTTCCGTGCAGGGTAC
ACACCAGTGGATTACCCGTCGGAGAGAGCGTGGGAGGCCAGGGCGATGAT
CGAGAGGTCGGCAGCTGTGAAATGCCCGACGTTAGGGTACCAGTTGGCGG
GCACCAAAAAAGTGCAGCAACTGCTTTGTGCACCACAGGCCCTCGGGAGA
TTTCTGAGCAAGGAGCAGTGTGCGGTGGCACAGCGGCATTTCACGGGCTT
GTATGGTCTGGGGCAGGAGGAGCTGAAGGAGGAGAGGGGGTTGTCTGCCA
CGGCAGTGAGGGCCGCGATTGCGAATCCACAAGCCTACGTTCTGAAGCCA
CAGAGGGAGGGAGGCGGGAATAATTTTTATGACGAGGAATTGAAGACGGC
GTTGGAGACCTGGTCACCCGATAAGTTGTCGGGACATATATTGATGCAAC
GGATACAGGCGCCGGCGCGAAATGCGTATCTGATGAGGGAGGGGAAGGTG
GTGGTGGGTCCGGCAGTGAGTGAATTGGGTGTTTTCAGTACCTTCCTGGG
TGATGCGTCGGCCGGGGAGGACGGGGAGGAAGGGAAGGGAGGCGTGCAGG
TGAATAGCTATGCAGGATACAACGTAAGGACGAAGCTGGCGACTGTTAAT
GAGGGAGGGGTGGCGACGGGCTTTGCGGTGCTGGACAGTCCCATGCTGGT
GGATGAATGA
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Synonyms
Publications