jgi.p|Nanoce1779_2|538610, mRNA_2434 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|538610
Unique Name	mRNA_2434
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1489
Alignment location	scaffold_5:340990..342661 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	538696
Track	FilteredModels2
ProteinId	538610

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:340990..342661 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|538610	gene_2434	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|538610	mRNA_2434-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2434	CDS_2434	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:340990..342661+
coding sequence from alignment at scaffold_5:340990..342661+

mRNA sequence

>mRNA_2434 ID=mRNA_2434|Name=jgi.p|Nanoce1779_2|538610|organism=Nannochloropsis oceanica|type=mRNA|length=1489bp
TATACGCCCGCAACATGCACCACGTTTACATCCACCGCACTAACACCACG
TGTATAATGAGCATGCGTAGTTTTTCTTCTCTTGGTGTCTGAGGCTTTCC
TATCCACTACATGACCCACATCCCCGCCCTTACTCTTTCAACCTCCTTTC
CCCCATCCATTCACATGCCAGCAGCCATGGGCAAGCGACGCAAGCGCCGG
ACACACGTCCCCCTTTCCAACCCGCAGCAGCAAGCAAGCATCCCAGAAGA
GGAGCGGGTGCCCAAGAGCCTGGTCCTGAGAAAGGGGCGGACCACCCCCG
AGGTGGGGAGTTTGGTAGCGGAACTGCGGCGGCTTATGGGGCCGGAGACG
GCCTCTCGCCTTAAGGAACGGCGCACCAATCGCATGAAGGACTTTGCTGC
CGTGGCGGGCCACTTAGGACTGACGCACATCTTATCATTTTCGCAGAGCC
CCGCGGCGCTGAAATTAAGGATTGCCCGGTTCCCGCGTGGCCCTACTCTG
ACTTTCAAGGTGGAGCGGTATTGCTTGCAGCATCACGTGCGGGCGACACA
AAAGCGACCGTATGAGAGCTTGAGTGCCTATCAAACTGCACCATTGGTGG
TCCTGAATAATTTTGGGGATGCCAGCAGTCCACCCTATGTCAAGCTGATG
AAGATCACATTTCAGAACATGTTCCCCCCTCTGAATGTGAACACGGTGAA
GCTCACTGACTGTCGGCGGATTGTTTTATTCGATTACGACGCTGCGACGG
GGCTGGTGGAACAGAGGCATTTTGCTATCCGGGCGGCTCCCTCCGAGTTG
CACAAGAGTATCAAGAAATTGGTCCAGACGAAGATTCCCAGCTTGGGGAG
CATGACAGACATAAGTGAATTCGTGCTTGGCCCGGCCCTCCAAGCCTACG
GCGGCGCCGGCGCCGCCTCCGACAGCGAGGTGGATGACGAGACCTCTCAT
GTCATACTCCCCGAGCGATTTCGAGGGCGGGGTAATTTAAAAAGTCAAAA
ATCGGCGATTCGACTGGCGGAACTGGGTCCGAGGTTGACTATGAAGCTGA
TGAAGGTCGAGAGAGGGTTCTTGGAGGGGGATGTGATATACCACGATTAC
ATCAAGAAGGCTCCCGAAGAGGTGCGGGCGTTGGAAGCGAAGGCCAAGGC
GGGGAGGGAGTTGAAGAAACGGAGGAGGGAAGAGCAGGAGGCGAACGTAG
CGAGGAAAGAACAGAAATTGCAGGAGGCCAAGGAAAGGAGGGAGGCACGG
ATGACGGAACGGGCTGCGAGGAGGGAGGCGGAGGGGGGAGGGGAAGGAGG
GGAGGGGGAAGAGGAGCAGAGTGAACAGGAAGGAGAGGAGGAGAGCGAAG
GCGGAGAAATGATGAGCGAAGATGAAGAGGCGTGAAGTGTCTGTGAGTTC
TTGTGTGTATGTAGAGGGGGGCAAGGGAAGGAGGGAGGGAGAGAGGGAGA
GCGGGCGAATAGAAAGTAGAGGGCAAAGAAACAAAGCAT

protein sequence of jgi.p|Nanoce1779_2|538610

>mRNA_2434-protein ID=mRNA_2434-protein|Name=jgi.p|Nanoce1779_2|538610|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp
MTHIPALTLSTSFPPSIHMPAAMGKRRKRRTHVPLSNPQQQASIPEEERV
PKSLVLRKGRTTPEVGSLVAELRRLMGPETASRLKERRTNRMKDFAAVAG
HLGLTHILSFSQSPAALKLRIARFPRGPTLTFKVERYCLQHHVRATQKRP
YESLSAYQTAPLVVLNNFGDASSPPYVKLMKITFQNMFPPLNVNTVKLTD
CRRIVLFDYDAATGLVEQRHFAIRAAPSELHKSIKKLVQTKIPSLGSMTD
ISEFVLGPALQAYGGAGAASDSEVDDETSHVILPERFRGRGNLKSQKSAI
RLAELGPRLTMKLMKVERGFLEGDVIYHDYIKKAPEEVRALEAKAKAGRE
LKKRRREEQEANVARKEQKLQEAKERREARMTERAARREAEGGGEGGEGE
EEQSEQEGEEESEGGEMMSEDEEA*

mRNA from alignment at scaffold_5:340990..342661+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2434 ID=mRNA_2434|Name=jgi.p|Nanoce1779_2|538610|organism=Nannochloropsis oceanica|type=mRNA|length=1672bp|location=Sequence derived from alignment at scaffold_5:340990..342661+ (Nannochloropsis oceanica)
TATACGCCCGCAACATGCACCACGTTTACATCCACCGCACTAACACCACG
TGTATAATGAGCATGCGTAGTTTTTCTTCTCTTGGTGTCTGAGGCTTTCC
TATCCACTACATGACCCACATCCCCGCCCTTACTCTTTCAACCTCCTTTC
CCCCATCCATTCACATGCCAGCAGCCATGGGCAAGCGACGCAAGCGCCGG
ACACACGTCCCCCTTTCCAACCCGCAGCAGCAAGCAAGCATCCCAGAAGA
GGAGCGGGTGCCCAAGAGCCTGGTCCTGAGAAAGGGGCGGACCACCCCCG
AGGTGGGGAGTTTGGTAGCGGAACTGCGGCGGCTTATGGGGCCGGAGACG
GCCTCTCGCCTTAAGGAACGGCGCACCAATCGCATGAAGGACTTTGCTGC
CGTGGCGGGCCACTTAGGACTGACGCACATCTTATCATTTTCGCAGAGCC
CCGCGGCGCTGAAATTAAGGATTGCCCGGTTCCCGCGTGGCCCTACTCTG
ACTTTCAAGGTGGAGCGGTATTGCTTGCAGCATCACGTGCGGGCGACACA
AAAGCGACCGTATGAGAGCTTGAGTGCCTATCAAACTGCACCATTGGTGG
TCCTGAATAATTTTGGGGATGCCAGCAGTCCACCCTATGTCAAGCTGATG
AAGATCACATTTCAGAACATGTTCCCCCCTCTGAATGTGAACACGGTGAA
GCTCACTGACTGTCGGCGGATTGTTTTATTCGATTACGACGCTGCGACGG
GGCTGGTGGAACAGAGGCATTTTGCTATCCGGGCGGCTCCCTCCGAGTTG
CACAAGAGTATCAAGAAATTGGTCCAGACGAAGATTCCCAGCTTGGGGAG
CATGACAGACATAAGGTACGTGGCCGCCCTCCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCTCCCCCTTCCTCCCTTCCTTTTGGCATACACACTTTCGAT
ACTGTCATGCAGTCCTCCTTTTTATAATATCGCCACACTTACATCCCTCT
CTTGCGAACGACTTCGTCTCTACCTCCCTCCCTCCCTCCCTCTGTTAGTG
AATTCGTGCTTGGCCCGGCCCTCCAAGCCTACGGCGGCGCCGGCGCCGCC
TCCGACAGCGAGGTGGATGACGAGACCTCTCATGTCATACTCCCCGAGCG
ATTTCGAGGGCGGGGTAATTTAAAAAGTCAAAAATCGGCGATTCGACTGG
CGGAACTGGGTCCGAGGTTGACTATGAAGCTGATGAAGGTCGAGAGAGGG
TTCTTGGAGGGGGATGTGATATACCACGATTACATCAAGAAGGCTCCCGA
AGAGGTGCGGGCGTTGGAAGCGAAGGCCAAGGCGGGGAGGGAGTTGAAGA
AACGGAGGAGGGAAGAGCAGGAGGCGAACGTAGCGAGGAAAGAACAGAAA
TTGCAGGAGGCCAAGGAAAGGAGGGAGGCACGGATGACGGAACGGGCTGC
GAGGAGGGAGGCGGAGGGGGGAGGGGAAGGAGGGGAGGGGGAAGAGGAGC
AGAGTGAACAGGAAGGAGAGGAGGAGAGCGAAGGCGGAGAAATGATGAGC
GAAGATGAAGAGGCGTGAAGTGTCTGTGAGTTCTTGTGTGTATGTAGAGG
GGGGCAAGGGAAGGAGGGAGGGAGAGAGGGAGAGCGGGCGAATAGAAAGT
AGAGGGCAAAGAAACAAAGCAT

Coding sequence (CDS) from alignment at scaffold_5:340990..342661+

>mRNA_2434 ID=mRNA_2434|Name=jgi.p|Nanoce1779_2|538610|organism=Nannochloropsis oceanica|type=CDS|length=2550bp|location=Sequence derived from alignment at scaffold_5:340990..342661+ (Nannochloropsis oceanica)
ATGACCCACATCCCCGCCCTTACTCTTTCAACCTCCTTTCCCCCATCCAT
TCACATGCCAGCAGCCATGGGCAAGCGACGCAAGCGCCGGACACACGTCC
CCCTTTCCAACCCGCAGCAGCAAGCAAGCATCCCAGAAGAGGAGCGGGTG
CCCAAGAGCCTGGTCCTGAGAAAGGGGCGGACCACCCCCGAGGTGGGGAG
TTTGGTAGCGGAACTGCGGCGGCTTATGGGGCCGGAGACGGCCTCTCGCC
TTAAGGAACGGCGCACCAATCGCATGAAGGACTTTGCTGCCGTGGCGGGC
CACTTAGGACTGACGCACATCTTATCATTTTCGCAGAGCCCCGCGGCGCT
GAAATTAAGGATTGCCCGGTTCCCGCGTGGCCCTACTCTGACTTTCAAGG
TGGAGCGGTATTGCTTGCAGCATCACGTGCGGGCGACACAAAAGCGACCG
TATGAGAGCTTGAGTGCCTATCAAACTGCACCATTGGTGGTCCTGAATAA
TTTTGGGGATGCCAGCAGTCCACCCTATGTCAAGCTGATGAAGATCACAT
TTCAGAACATGTTCCCCCCTCTGAATGTGAACACGGTGAAGCTCACTGAC
TGTCGGCGGATTGTTTTATTCGATTACGACGCTGCGACGGGGCTGGTGGA
ACAGAGGCATTTTGCTATCCGGGCGGCTCCCTCCGAGTTGCACAAGAGTA
TCAAGAAATTGGTCCAGACGAAGATTCCCAGCTTGGGGAGCATGACAGAC
ATAAGTGAATTCGTGCTTGGCCCGGCCCTCCAAGCCTACGGCGGCGCCGG
CGCCGCCTCCGACAGCGAGGTGGATGACGAGACCTCTCATGTCATACTCC
CCGAGCGATTTCGAGGGCGGGGTAATTTAAAAAGTCAAAAATCGGCGATT
CGACTGGCGGAACTGGGTCCGAGGTTGACTATGAAGCTGATGAAGGTCGA
GAGAGGGTTCTTGGAGGGGGATGTGATATACCACGATTACATCAAGAAGG
CTCCCGAAGAGGTGCGGGCGTTGGAAGCGAAGGCCAAGGCGGGGAGGGAG
TTGAAGAAACGGAGGAGGGAAGAGCAGGAGGCGAACGTAGCGAGGAAAGA
ACAGAAATTGCAGGAGGCCAAGGAAAGGAGGGAGGCACGGATGACGGAAC
GGGCTGCGAGGAGGGAGGCGGAGGGGGGAGGGGAAGGAGGGGAGGGGGAA
GAGGAGCAGAGTGAACAGGAAGGAGAGGAGGAGAGCGAAGGCGGAGAAAT
GATGAGCGAAGATGAAGAGGCGTGAATGACCCACATCCCCGCCCTTACTC
TTTCAACCTCCTTTCCCCCATCCATTCACATGCCAGCAGCCATGGGCAAG
CGACGCAAGCGCCGGACACACGTCCCCCTTTCCAACCCGCAGCAGCAAGC
AAGCATCCCAGAAGAGGAGCGGGTGCCCAAGAGCCTGGTCCTGAGAAAGG
GGCGGACCACCCCCGAGGTGGGGAGTTTGGTAGCGGAACTGCGGCGGCTT
ATGGGGCCGGAGACGGCCTCTCGCCTTAAGGAACGGCGCACCAATCGCAT
GAAGGACTTTGCTGCCGTGGCGGGCCACTTAGGACTGACGCACATCTTAT
CATTTTCGCAGAGCCCCGCGGCGCTGAAATTAAGGATTGCCCGGTTCCCG
CGTGGCCCTACTCTGACTTTCAAGGTGGAGCGGTATTGCTTGCAGCATCA
CGTGCGGGCGACACAAAAGCGACCGTATGAGAGCTTGAGTGCCTATCAAA
CTGCACCATTGGTGGTCCTGAATAATTTTGGGGATGCCAGCAGTCCACCC
TATGTCAAGCTGATGAAGATCACATTTCAGAACATGTTCCCCCCTCTGAA
TGTGAACACGGTGAAGCTCACTGACTGTCGGCGGATTGTTTTATTCGATT
ACGACGCTGCGACGGGGCTGGTGGAACAGAGGCATTTTGCTATCCGGGCG
GCTCCCTCCGAGTTGCACAAGAGTATCAAGAAATTGGTCCAGACGAAGAT
TCCCAGCTTGGGGAGCATGACAGACATAAGTGAATTCGTGCTTGGCCCGG
CCCTCCAAGCCTACGGCGGCGCCGGCGCCGCCTCCGACAGCGAGGTGGAT
GACGAGACCTCTCATGTCATACTCCCCGAGCGATTTCGAGGGCGGGGTAA
TTTAAAAAGTCAAAAATCGGCGATTCGACTGGCGGAACTGGGTCCGAGGT
TGACTATGAAGCTGATGAAGGTCGAGAGAGGGTTCTTGGAGGGGGATGTG
ATATACCACGATTACATCAAGAAGGCTCCCGAAGAGGTGCGGGCGTTGGA
AGCGAAGGCCAAGGCGGGGAGGGAGTTGAAGAAACGGAGGAGGGAAGAGC
AGGAGGCGAACGTAGCGAGGAAAGAACAGAAATTGCAGGAGGCCAAGGAA
AGGAGGGAGGCACGGATGACGGAACGGGCTGCGAGGAGGGAGGCGGAGGG
GGGAGGGGAAGGAGGGGAGGGGGAAGAGGAGCAGAGTGAACAGGAAGGAG
AGGAGGAGAGCGAAGGCGGAGAAATGATGAGCGAAGATGAAGAGGCGTGA

Synonyms

Publications