jgi.p|Nanoce1779_2|637365, mRNA_2433 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|637365
Unique Name	mRNA_2433
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	978
Alignment location	scaffold_5:339370..340788 -

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Properties


Property Name	Value
TranscriptId	637451
Track	FilteredModels2
ProteinId	637365

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:339370..340788 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|637365	gene_2433	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|637365	mRNA_2433-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2433	CDS_2433	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:339370..340788-
coding sequence from alignment at scaffold_5:339370..340788-

mRNA sequence

>mRNA_2433 ID=mRNA_2433|Name=jgi.p|Nanoce1779_2|637365|organism=Nannochloropsis oceanica|type=mRNA|length=978bp
ATGAGGAGAGTTGTCGTTTGCACGCGTCATCTGCAAGCAGCAGCTTCAGC
GGCTTCTCATCGACAGGCGCCCGTGGCCAGTGCGGCGCGTCAGCGGCCAC
GGCCGTACAAACCCGGCTTCTTTAGCCGCAACGTTGGCAAGATTGTGCTC
GTTACCTTGGGCTCATTGATCGCCTACTTATACCGCTCGTCTGAGAACAA
GATGCGTTCGAAAGCTTTAAAAATCTTCCTAGAAGACCAACGTGCCATCG
AACCCTGGGAGATCGACGAGCTGCGTATGGCCAACTGGGGGACTTGGGAC
CAGGCTCTCTTCCATGAGGTAGCCGCTGCTGTTGTAGCTGCTTTCCCGGA
GCGAAAGGCATCGTCGTACCAAGCGTTGATTGAGGTGGTGGCGAAGGTAT
TGGGGGGTCACGGGAAGAGGTTGCAAATGGGCCATTACTTGGACCGCGTG
GTGTTGTGCACGCAGCCGGAGGAAGGGAGGGAGGGGAGAGAGGTGGATGT
GCTGGTGTTCCTGTGTGCGCTATCCTTGTCGTTGAATCTTGACGTGGACG
AACGAGTGGCCGCTTTATTCGACACCATGCTGGTTCTAAGAGGAGGCTTG
GGAGGGGAGGGAGGAGGGGGCTACATGGATCGGAGGGCGCTTGAGAAGCT
GTTGGGAGGGCTAGTGGCCACGGCGCAGGTACCGGCGGAGGTGTTGGTGC
AACCGGACAAGACAATGGAGTATCCCTTCCAGTCATACAAAGTGGCCAGT
ATCGAGGAGATTGTCGACAAGGCCATAGTCGAGGGGAAGGAAAGGTATGA
GAAGCGAGTGAAGGATGCGAAGAAAGCGGGGCGGGAGCCACCAGTGCCAC
CGCCGCTGGCAGGAGAGGAGGGGGGAAGGCCGGGTGATGGGGGGAGGTTG
AGCTTGGAGGGGTTGGTTCAGATGTTGGAAACGAAGGCGATATGTGCTTG
GGGTGAGTGCTACCAAGGGAGGGAATAG

protein sequence of jgi.p|Nanoce1779_2|637365

>mRNA_2433-protein ID=mRNA_2433-protein|Name=jgi.p|Nanoce1779_2|637365|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MRRVVVCTRHLQAAASAASHRQAPVASAARQRPRPYKPGFFSRNVGKIVL
VTLGSLIAYLYRSSENKMRSKALKIFLEDQRAIEPWEIDELRMANWGTWD
QALFHEVAAAVVAAFPERKASSYQALIEVVAKVLGGHGKRLQMGHYLDRV
VLCTQPEEGREGREVDVLVFLCALSLSLNLDVDERVAALFDTMLVLRGGL
GGEGGGGYMDRRALEKLLGGLVATAQVPAEVLVQPDKTMEYPFQSYKVAS
IEEIVDKAIVEGKERYEKRVKDAKKAGREPPVPPPLAGEEGGRPGDGGRL
SLEGLVQMLETKAICAWGECYQGRE*

mRNA from alignment at scaffold_5:339370..340788-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2433 ID=mRNA_2433|Name=jgi.p|Nanoce1779_2|637365|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp|location=Sequence derived from alignment at scaffold_5:339370..340788- (Nannochloropsis oceanica)
ATGAGGAGAGTTGTCGTTTGGTACGTACACGGCAGGAGAGGAGGTCCCAG
CCCGTCAAGCTTCCCACATCCCATACTTAACCCTTTCTCACTCCGTTCTA
TACCCTACAGCACGCGTCATCTGCAAGCAGCAGCTTCAGCGGCTTCTCAT
CGACAGGCGCCCGTGGCCAGTGCGGCGCGTCAGCGGCCACGGGTGCGACC
CCTCAGCACAAGTCCTCCCGTCACAGCAGCTCCTCCCAGCGCTCCTTCTC
CTGGAACTGTGCCTGGCGTCCCAGGCGCCGCCGCGGGCTCTTCTACACAG
CCGTACAAACCCGGCTTCTTTAGCCGCAACGTTGGCAAGATTGTGCTCGT
TACCTTGGGCTCATTGATCGCCTACTTATACCGCTCGTCTGAGGTGCGTG
TTTTGGTTGTGGATGTGTCCACCTCCAGCTCTCTCTCCCTACCTCTTTGC
CAGCTAAATGCTTGTTGTAAATGTCGTCAATATCATCCACTTTCTCTTTT
AAGTTCCGAAGTTATGTGTGAGGGAGCAGCCGTAGGGCCATCGTCTGTTT
CTTTGCTCACCTTGACAAGCAAACGGAAAGCAACGAAATAATCGCACCCC
TCCTTCCATTCTTCCCTCCCTCGCACCTTTCCCCAGAACAAGATGCGTTC
GAAAGCTTTAAAAATCTTCCTAGAAGACCAACGTGCCATCGAACCCTGGG
AGATCGACGAGCTGCGTATGGCCAACTGGGGGACTTGGGACCAGGCTCTC
TTCCATGAGGTAGCCGCTGCTGTTGTAGCTGCTTTCCCGGAGCGAAAGGC
ATCGTCGTACCAAGCGTTGATTGAGGTGGTGGCGAAGGTATTGGGGGGTC
ACGGGAAGAGGTTGCAAATGGGCCATTACTTGGACCGCGTGGTGTTGTGC
ACGCAGCCGGAGGAAGGGAGGGAGGGGAGAGAGGTGGATGTGCTGGTGTT
CCTGTGTGCGCTATCCTTGTCGTTGAATCTTGACGTGGACGAACGAGTGG
CCGCTTTATTCGACACCATGCTGGTTCTAAGAGGAGGCTTGGGAGGGGAG
GGAGGAGGGGGCTACATGGATCGGAGGGCGCTTGAGAAGCTGTTGGGAGG
GCTAGTGGCCACGGCGCAGGTACCGGCGGAGGTGTTGGTGCAACCGGACA
AGACAATGGAGTATCCCTTCCAGTCATACAAAGTGGCCAGTATCGAGGAG
ATTGTCGACAAGGCCATAGTCGAGGGGAAGGAAAGGTATGAGAAGCGAGT
GAAGGATGCGAAGAAAGCGGGGCGGGAGCCACCAGTGCCACCGCCGCTGG
CAGGAGAGGAGGGGGGAAGGCCGGGTGATGGGGGGAGGTTGAGCTTGGAG
GGGTTGGTTCAGATGTTGGAAACGAAGGCGATATGTGCTTGGGGTGAGTG
CTACCAAGGGAGGGAATAG

Coding sequence (CDS) from alignment at scaffold_5:339370..340788-

>mRNA_2433 ID=mRNA_2433|Name=jgi.p|Nanoce1779_2|637365|organism=Nannochloropsis oceanica|type=CDS|length=3912bp|location=Sequence derived from alignment at scaffold_5:339370..340788- (Nannochloropsis oceanica)
AACAAGATGCGTTCGAAAGCTTTAAAAATCTTCCTAGAAGACCAACGTGC
CATCGAACCCTGGGAGATCGACGAGCTGCGTATGGCCAACTGGGGGACTT
GGGACCAGGCTCTCTTCCATGAGGTAGCCGCTGCTGTTGTAGCTGCTTTC
CCGGAGCGAAAGGCATCGTCGTACCAAGCGTTGATTGAGGTGGTGGCGAA
GGTATTGGGGGGTCACGGGAAGAGGTTGCAAATGGGCCATTACTTGGACC
GCGTGGTGTTGTGCACGCAGCCGGAGGAAGGGAGGGAGGGGAGAGAGGTG
GATGTGCTGGTGTTCCTGTGTGCGCTATCCTTGTCGTTGAATCTTGACGT
GGACGAACGAGTGGCCGCTTTATTCGACACCATGCTGGTTCTAAGAGGAG
GCTTGGGAGGGGAGGGAGGAGGGGGCTACATGGATCGGAGGGCGCTTGAG
AAGCTGTTGGGAGGGCTAGTGGCCACGGCGCAGGTACCGGCGGAGGTGTT
GGTGCAACCGGACAAGACAATGGAGTATCCCTTCCAGTCATACAAAGTGG
CCAGTATCGAGGAGATTGTCGACAAGGCCATAGTCGAGGGGAAGGAAAGG
TATGAGAAGCGAGTGAAGGATGCGAAGAAAGCGGGGCGGGAGCCACCAGT
GCCACCGCCGCTGGCAGGAGAGGAGGGGGGAAGGCCGGGTGATGGGGGGA
GGTTGAGCTTGGAGGGGTTGGTTCAGATGTTGGAAACGAAGGCGATATGT
GCTTGGGGTGAGTGCTACCAAGGGAGGGAATAGCCGTACAAACCCGGCTT
CTTTAGCCGCAACGTTGGCAAGATTGTGCTCGTTACCTTGGGCTCATTGA
TCGCCTACTTATACCGCTCGTCTGAGCACGCGTCATCTGCAAGCAGCAGC
TTCAGCGGCTTCTCATCGACAGGCGCCCGTGGCCAGTGCGGCGCGTCAGC
GGCCACGGATGAGGAGAGTTGTCGTTTGAACAAGATGCGTTCGAAAGCTT
TAAAAATCTTCCTAGAAGACCAACGTGCCATCGAACCCTGGGAGATCGAC
GAGCTGCGTATGGCCAACTGGGGGACTTGGGACCAGGCTCTCTTCCATGA
GGTAGCCGCTGCTGTTGTAGCTGCTTTCCCGGAGCGAAAGGCATCGTCGT
ACCAAGCGTTGATTGAGGTGGTGGCGAAGGTATTGGGGGGTCACGGGAAG
AGGTTGCAAATGGGCCATTACTTGGACCGCGTGGTGTTGTGCACGCAGCC
GGAGGAAGGGAGGGAGGGGAGAGAGGTGGATGTGCTGGTGTTCCTGTGTG
CGCTATCCTTGTCGTTGAATCTTGACGTGGACGAACGAGTGGCCGCTTTA
TTCGACACCATGCTGGTTCTAAGAGGAGGCTTGGGAGGGGAGGGAGGAGG
GGGCTACATGGATCGGAGGGCGCTTGAGAAGCTGTTGGGAGGGCTAGTGG
CCACGGCGCAGGTACCGGCGGAGGTGTTGGTGCAACCGGACAAGACAATG
GAGTATCCCTTCCAGTCATACAAAGTGGCCAGTATCGAGGAGATTGTCGA
CAAGGCCATAGTCGAGGGGAAGGAAAGGTATGAGAAGCGAGTGAAGGATG
CGAAGAAAGCGGGGCGGGAGCCACCAGTGCCACCGCCGCTGGCAGGAGAG
GAGGGGGGAAGGCCGGGTGATGGGGGGAGGTTGAGCTTGGAGGGGTTGGT
TCAGATGTTGGAAACGAAGGCGATATGTGCTTGGGGTGAGTGCTACCAAG
GGAGGGAATAGCCGTACAAACCCGGCTTCTTTAGCCGCAACGTTGGCAAG
ATTGTGCTCGTTACCTTGGGCTCATTGATCGCCTACTTATACCGCTCGTC
TGAGCACGCGTCATCTGCAAGCAGCAGCTTCAGCGGCTTCTCATCGACAG
GCGCCCGTGGCCAGTGCGGCGCGTCAGCGGCCACGGATGAGGAGAGTTGT
CGTTTGAACAAGATGCGTTCGAAAGCTTTAAAAATCTTCCTAGAAGACCA
ACGTGCCATCGAACCCTGGGAGATCGACGAGCTGCGTATGGCCAACTGGG
GGACTTGGGACCAGGCTCTCTTCCATGAGGTAGCCGCTGCTGTTGTAGCT
GCTTTCCCGGAGCGAAAGGCATCGTCGTACCAAGCGTTGATTGAGGTGGT
GGCGAAGGTATTGGGGGGTCACGGGAAGAGGTTGCAAATGGGCCATTACT
TGGACCGCGTGGTGTTGTGCACGCAGCCGGAGGAAGGGAGGGAGGGGAGA
GAGGTGGATGTGCTGGTGTTCCTGTGTGCGCTATCCTTGTCGTTGAATCT
TGACGTGGACGAACGAGTGGCCGCTTTATTCGACACCATGCTGGTTCTAA
GAGGAGGCTTGGGAGGGGAGGGAGGAGGGGGCTACATGGATCGGAGGGCG
CTTGAGAAGCTGTTGGGAGGGCTAGTGGCCACGGCGCAGGTACCGGCGGA
GGTGTTGGTGCAACCGGACAAGACAATGGAGTATCCCTTCCAGTCATACA
AAGTGGCCAGTATCGAGGAGATTGTCGACAAGGCCATAGTCGAGGGGAAG
GAAAGGTATGAGAAGCGAGTGAAGGATGCGAAGAAAGCGGGGCGGGAGCC
ACCAGTGCCACCGCCGCTGGCAGGAGAGGAGGGGGGAAGGCCGGGTGATG
GGGGGAGGTTGAGCTTGGAGGGGTTGGTTCAGATGTTGGAAACGAAGGCG
ATATGTGCTTGGGGTGAGTGCTACCAAGGGAGGGAATAGCCGTACAAACC
CGGCTTCTTTAGCCGCAACGTTGGCAAGATTGTGCTCGTTACCTTGGGCT
CATTGATCGCCTACTTATACCGCTCGTCTGAGCACGCGTCATCTGCAAGC
AGCAGCTTCAGCGGCTTCTCATCGACAGGCGCCCGTGGCCAGTGCGGCGC
GTCAGCGGCCACGGATGAGGAGAGTTGTCGTTTGAACAAGATGCGTTCGA
AAGCTTTAAAAATCTTCCTAGAAGACCAACGTGCCATCGAACCCTGGGAG
ATCGACGAGCTGCGTATGGCCAACTGGGGGACTTGGGACCAGGCTCTCTT
CCATGAGGTAGCCGCTGCTGTTGTAGCTGCTTTCCCGGAGCGAAAGGCAT
CGTCGTACCAAGCGTTGATTGAGGTGGTGGCGAAGGTATTGGGGGGTCAC
GGGAAGAGGTTGCAAATGGGCCATTACTTGGACCGCGTGGTGTTGTGCAC
GCAGCCGGAGGAAGGGAGGGAGGGGAGAGAGGTGGATGTGCTGGTGTTCC
TGTGTGCGCTATCCTTGTCGTTGAATCTTGACGTGGACGAACGAGTGGCC
GCTTTATTCGACACCATGCTGGTTCTAAGAGGAGGCTTGGGAGGGGAGGG
AGGAGGGGGCTACATGGATCGGAGGGCGCTTGAGAAGCTGTTGGGAGGGC
TAGTGGCCACGGCGCAGGTACCGGCGGAGGTGTTGGTGCAACCGGACAAG
ACAATGGAGTATCCCTTCCAGTCATACAAAGTGGCCAGTATCGAGGAGAT
TGTCGACAAGGCCATAGTCGAGGGGAAGGAAAGGTATGAGAAGCGAGTGA
AGGATGCGAAGAAAGCGGGGCGGGAGCCACCAGTGCCACCGCCGCTGGCA
GGAGAGGAGGGGGGAAGGCCGGGTGATGGGGGGAGGTTGAGCTTGGAGGG
GTTGGTTCAGATGTTGGAAACGAAGGCGATATGTGCTTGGGGTGAGTGCT
ACCAAGGGAGGGAATAGCCGTACAAACCCGGCTTCTTTAGCCGCAACGTT
GGCAAGATTGTGCTCGTTACCTTGGGCTCATTGATCGCCTACTTATACCG
CTCGTCTGAGCACGCGTCATCTGCAAGCAGCAGCTTCAGCGGCTTCTCAT
CGACAGGCGCCCGTGGCCAGTGCGGCGCGTCAGCGGCCACGGATGAGGAG
AGTTGTCGTTTG

Synonyms

Publications