jgi.p|Nanoce1779_2|580349, mRNA_2432 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580349
Unique Name	mRNA_2432
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1307
Alignment location	scaffold_5:337711..339279 +

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Properties


Property Name	Value
TranscriptId	580435
Track	FilteredModels2
ProteinId	580349

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:337711..339279 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580349	gene_2432	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580349	mRNA_2432-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2432	CDS_2432	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:337711..339279+
coding sequence from alignment at scaffold_5:337711..339279+

mRNA sequence

>mRNA_2432 ID=mRNA_2432|Name=jgi.p|Nanoce1779_2|580349|organism=Nannochloropsis oceanica|type=mRNA|length=1307bp
ACAGACCTAGAAACGTCATCCCTAAGCTGCCGTGGATTTGAAGGGCCTCG
CTTGAATACACTCGCCATTTCCGCTTGAGACTACGCCACCGAACTCACCA
CCATGCCGCCCGCCGCCTCGCACCTGGGCCTCTTGATCCTGGCCAGTGTC
TTACTGAGTGTCAAGGCAATGTCCTGGAAGAGGAGACGCATAGGAGGCAA
GTGGGCAGCCACCAACCTCAAGCACCTCAAAGACTTTGTGGTGGAAGAAG
TGCTGAGCAGCAACGAAGTGACACCCTCTCCCGATGGGTTCACGGTTTTC
TTAGGCCATTTCACCTGGCAAGGGCCCGAGGAAAAAGCGCTCATAAAATT
GCGTCCGCAGCAGCTTCCCGCCACCGACAAGATTGACACTACAGCAGCAA
CAACAGCAGCAGCAGCAACCAAAACACCAAGAAGTTTACGTTGTCTGTTG
AGGTATATAGGCCTTCGAGTCGACCTCGAAAGCGGGGCGGAATACGGCTA
TTATCACGGCAGCATATCTCCTCTCAAACTCACCCTCCTCCGCGTCCCCC
TTGCCTATCACATTGAAGTCATCGCTCCAGCCAGCCCTCGTCAAATCATC
CGCGCCCGCGTCGAAGAGCGCATACTTGTTCGAGAAACGCCTGAATTGTA
CCAACAAGTCCTTGGTCCGCTGGCAGAAGAGATAAGAAAAGATGGCCGTT
CTATCCAATGGGTCTACAACATCCTCGACCACAAAAAGGAAGTGGACCGC
ATCGTCTTTGAAGAGCCTCCCCTCCCCCCTTCTTCCCCCCCTTCCTCCTC
CCCTTCAGGTGGATTTCTTCTAGTACCTGACCCTAAATGGAAATCACACC
CTAACCCCTCTGACACTCCCAAAGAGGAATGGAGGCACCACTCTTGCACT
GCCGGTCTGGCGTGCCTCGCTATAGTCCACGACAGAGACATTGGTTCCTT
GCGAGATCTGAGACGTAAGCATGTGCCGCTGTTGAAAAACGTGTTGGAGA
AGGGTTTGAAGGCCATTGAGAAGGTGTATGGGGTTGGGCCGGAGGAGATA
CGAGTGTTCGTGCATTATGTGCCACAGTTTTTCCACTTCCACGTACACTT
CTCCCGCCTCAGCCTCGCTCACGGCATTGAGGTTGAACGGGCGCATCTCC
TCTCTGATATAATCGACAAGATTGAGAACGCCCCACCAGGACAAGAATAT
TACGAAAAAGCCTGTATTTCTTACACTGTTAAGAAGAGTGAGGAAATCTT
TAAGCGATTGCAACGAGGGCCAGGCAAATGAAAGCAAAAAAATGATTTCG
AGAAAAA

protein sequence of jgi.p|Nanoce1779_2|580349

>mRNA_2432-protein ID=mRNA_2432-protein|Name=jgi.p|Nanoce1779_2|580349|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MPPAASHLGLLILASVLLSVKAMSWKRRRIGGKWAATNLKHLKDFVVEEV
LSSNEVTPSPDGFTVFLGHFTWQGPEEKALIKLRPQQLPATDKIDTTAAT
TAAAATKTPRSLRCLLRYIGLRVDLESGAEYGYYHGSISPLKLTLLRVPL
AYHIEVIAPASPRQIIRARVEERILVRETPELYQQVLGPLAEEIRKDGRS
IQWVYNILDHKKEVDRIVFEEPPLPPSSPPSSSPSGGFLLVPDPKWKSHP
NPSDTPKEEWRHHSCTAGLACLAIVHDRDIGSLRDLRRKHVPLLKNVLEK
GLKAIEKVYGVGPEEIRVFVHYVPQFFHFHVHFSRLSLAHGIEVERAHLL
SDIIDKIENAPPGQEYYEKACISYTVKKSEEIFKRLQRGPGK*

mRNA from alignment at scaffold_5:337711..339279+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2432 ID=mRNA_2432|Name=jgi.p|Nanoce1779_2|580349|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp|location=Sequence derived from alignment at scaffold_5:337711..339279+ (Nannochloropsis oceanica)
ACAGACCTAGAAACGTCATCCCTAAGCTGCCGTGGATTTGAAGGGCCTCG
CTTGAATACACTCGCCATTTCCGCTTGAGACTACGCCACCGAACTCACCA
CCATGCCGCCCGCCGCCTCGCACCTGGGCCTCTTGATCCTGGCCAGTGTC
TTACTGAGTGTCAAGGCAATGTCCTGGAAGAGGAGACGCATGTACGTTCA
TCCTGCGCCCATTCGTCATTCCGTCTCATCCATCCCACCTGTCTCATCCT
CCCCTCTCCCTTTTTCCTACGCACATATTGTCAGAGGAGGCAAGTGGGCA
GCCACCAACCTCAAGCACCTCAAAGACTTTGTGGTGGAAGAAGTGCTGAG
CAGCAACGAAGTGACACCCTCTCCCGATGGGTTCACGGTTTTCTTAGGCC
ATTTCACCTGGCAAGGGCCCGAGGAAAAAGCGCTCATAAAATTGCGTCCG
CAGCAGCTTCCCGCCACCGACAAGATTGACACTACAGCAGCAACAACAGC
AGCAGCAGCAACCAAAACACCAAGAAGTTTACGTTGTCTGTTGAGGTATA
TAGGCCTTCGAGTCGACCTCGAAAGCGGGGCGGAATACGGCTATTATCAC
GGCAGCATATCTCCTCTCAAACTCACCCTCCTCCGCGTCCCCCTTGCCTA
TCACATTGAAGTCATCGCTCCAGCCAGCCCTCGTCAAATCATCCGCGCCC
GCGTCGAAGAGCGCATACTTGTTCGAGAAACGCCTGAATTGTACCAACAA
GTCCTTGGTCCGCTGGCAGAAGAGATAAGAAAAGATGGCCGTTCTATCCA
ATGGGTCTACAACATCCTCGACCACAAAAAGGAAGTGGACCGCATCGTCT
TTGAAGAGCCTCCCCTCCCCCCTTCTTCCCCCCCTTCCTCCTCCCCTTCA
GGTGGATTTCTTCTAGTACCTGACCCTAAATGGAAATCACACCCTAACCC
CTCTGACACTCCCAAAGAGGAATGGAGGCACCACTCTTGCACTGCCGGTC
TGGCGTGCCTCGCTATAGTCCACGACAGAGACATTGGTTCCTTGCGAGAT
CTGAGACGTAAGCATGTGCCGCTGTTGAAAAACGTGTTGGAGAAGGGTTT
GAAGGCCATTGAGAAGGTGTATGGGGTTGGGCCGGAGGAGATACGAGTGT
TCGTGCATTATGTGCCACAGTTTTTCCACTTCCACGGTAAGGAGGGGAAA
TGAGGGGGGAGGGAGGGGGGGGAGGGAGGGCGAGAGCAGAGGTAGAAGAG
CAAGGGAAAAGGGTTGAGCCGATTATGTATTATATGCTTACATTCTACTT
TTTGATCCGATTCGATTTCGAGTTTCCACTCTAAACTTCCCACTGCCATG
CACAGTACACTTCTCCCGCCTCAGCCTCGCTCACGGCATTGAGGTTGAAC
GGGCGCATCTCCTCTCTGATATAATCGACAAGATTGAGAACGCCCCACCA
GGACAAGAATATTACGAAAAAGCCTGTATTTCTTACACTGTTAAGAAGAG
TGAGGAAATCTTTAAGCGATTGCAACGAGGGCCAGGCAAATGAAAGCAAA
AAAATGATTTCGAGAAAAA

Coding sequence (CDS) from alignment at scaffold_5:337711..339279+

>mRNA_2432 ID=mRNA_2432|Name=jgi.p|Nanoce1779_2|580349|organism=Nannochloropsis oceanica|type=CDS|length=3537bp|location=Sequence derived from alignment at scaffold_5:337711..339279+ (Nannochloropsis oceanica)
ATGCCGCCCGCCGCCTCGCACCTGGGCCTCTTGATCCTGGCCAGTGTCTT
ACTGAGTGTCAAGGCAATGTCCTGGAAGAGGAGACGCATAGGAGGCAAGT
GGGCAGCCACCAACCTCAAGCACCTCAAAGACTTTGTGGTGGAAGAAGTG
CTGAGCAGCAACGAAGTGACACCCTCTCCCGATGGGTTCACGGTTTTCTT
AGGCCATTTCACCTGGCAAGGGCCCGAGGAAAAAGCGCTCATAAAATTGC
GTCCGCAGCAGCTTCCCGCCACCGACAAGATTGACACTACAGCAGCAACA
ACAGCAGCAGCAGCAACCAAAACACCAAGAAGTTTACGTTGTCTGTTGAG
GTATATAGGCCTTCGAGTCGACCTCGAAAGCGGGGCGGAATACGGCTATT
ATCACGGCAGCATATCTCCTCTCAAACTCACCCTCCTCCGCGTCCCCCTT
GCCTATCACATTGAAGTCATCGCTCCAGCCAGCCCTCGTCAAATCATCCG
CGCCCGCGTCGAAGAGCGCATACTTGTTCGAGAAACGCCTGAATTGTACC
AACAAGTCCTTGGTCCGCTGGCAGAAGAGATAAGAAAAGATGGCCGTTCT
ATCCAATGGGTCTACAACATCCTCGACCACAAAAAGGAAGTGGACCGCAT
CGTCTTTGAAGAGCCTCCCCTCCCCCCTTCTTCCCCCCCTTCCTCCTCCC
CTTCAGGTGGATTTCTTCTAGTACCTGACCCTAAATGGAAATCACACCCT
AACCCCTCTGACACTCCCAAAGAGGAATGGAGGCACCACTCTTGCACTGC
CGGTCTGGCGTGCCTCGCTATAGTCCACGACAGAGACATTGGTTCCTTGC
GAGATCTGAGACGTAAGCATGTGCCGCTGTTGAAAAACGTGTTGGAGAAG
GGTTTGAAGGCCATTGAGAAGGTGTATGGGGTTGGGCCGGAGGAGATACG
AGTGTTCGTGCATTATGTGCCACAGTTTTTCCACTTCCACGTACACTTCT
CCCGCCTCAGCCTCGCTCACGGCATTGAGGTTGAACGGGCGCATCTCCTC
TCTGATATAATCGACAAGATTGAGAACGCCCCACCAGGACAAGAATATTA
CGAAAAAGCCTGTATTTCTTACACTGTTAAGAAGAGTGAGGAAATCTTTA
AGCGATTGCAACGAGGGCCAGGCAAATGAATGCCGCCCGCCGCCTCGCAC
CTGGGCCTCTTGATCCTGGCCAGTGTCTTACTGAGTGTCAAGGCAATGTC
CTGGAAGAGGAGACGCATAGGAGGCAAGTGGGCAGCCACCAACCTCAAGC
ACCTCAAAGACTTTGTGGTGGAAGAAGTGCTGAGCAGCAACGAAGTGACA
CCCTCTCCCGATGGGTTCACGGTTTTCTTAGGCCATTTCACCTGGCAAGG
GCCCGAGGAAAAAGCGCTCATAAAATTGCGTCCGCAGCAGCTTCCCGCCA
CCGACAAGATTGACACTACAGCAGCAACAACAGCAGCAGCAGCAACCAAA
ACACCAAGAAGTTTACGTTGTCTGTTGAGGTATATAGGCCTTCGAGTCGA
CCTCGAAAGCGGGGCGGAATACGGCTATTATCACGGCAGCATATCTCCTC
TCAAACTCACCCTCCTCCGCGTCCCCCTTGCCTATCACATTGAAGTCATC
GCTCCAGCCAGCCCTCGTCAAATCATCCGCGCCCGCGTCGAAGAGCGCAT
ACTTGTTCGAGAAACGCCTGAATTGTACCAACAAGTCCTTGGTCCGCTGG
CAGAAGAGATAAGAAAAGATGGCCGTTCTATCCAATGGGTCTACAACATC
CTCGACCACAAAAAGGAAGTGGACCGCATCGTCTTTGAAGAGCCTCCCCT
CCCCCCTTCTTCCCCCCCTTCCTCCTCCCCTTCAGGTGGATTTCTTCTAG
TACCTGACCCTAAATGGAAATCACACCCTAACCCCTCTGACACTCCCAAA
GAGGAATGGAGGCACCACTCTTGCACTGCCGGTCTGGCGTGCCTCGCTAT
AGTCCACGACAGAGACATTGGTTCCTTGCGAGATCTGAGACGTAAGCATG
TGCCGCTGTTGAAAAACGTGTTGGAGAAGGGTTTGAAGGCCATTGAGAAG
GTGTATGGGGTTGGGCCGGAGGAGATACGAGTGTTCGTGCATTATGTGCC
ACAGTTTTTCCACTTCCACGTACACTTCTCCCGCCTCAGCCTCGCTCACG
GCATTGAGGTTGAACGGGCGCATCTCCTCTCTGATATAATCGACAAGATT
GAGAACGCCCCACCAGGACAAGAATATTACGAAAAAGCCTGTATTTCTTA
CACTGTTAAGAAGAGTGAGGAAATCTTTAAGCGATTGCAACGAGGGCCAG
GCAAATGAATGCCGCCCGCCGCCTCGCACCTGGGCCTCTTGATCCTGGCC
AGTGTCTTACTGAGTGTCAAGGCAATGTCCTGGAAGAGGAGACGCATAGG
AGGCAAGTGGGCAGCCACCAACCTCAAGCACCTCAAAGACTTTGTGGTGG
AAGAAGTGCTGAGCAGCAACGAAGTGACACCCTCTCCCGATGGGTTCACG
GTTTTCTTAGGCCATTTCACCTGGCAAGGGCCCGAGGAAAAAGCGCTCAT
AAAATTGCGTCCGCAGCAGCTTCCCGCCACCGACAAGATTGACACTACAG
CAGCAACAACAGCAGCAGCAGCAACCAAAACACCAAGAAGTTTACGTTGT
CTGTTGAGGTATATAGGCCTTCGAGTCGACCTCGAAAGCGGGGCGGAATA
CGGCTATTATCACGGCAGCATATCTCCTCTCAAACTCACCCTCCTCCGCG
TCCCCCTTGCCTATCACATTGAAGTCATCGCTCCAGCCAGCCCTCGTCAA
ATCATCCGCGCCCGCGTCGAAGAGCGCATACTTGTTCGAGAAACGCCTGA
ATTGTACCAACAAGTCCTTGGTCCGCTGGCAGAAGAGATAAGAAAAGATG
GCCGTTCTATCCAATGGGTCTACAACATCCTCGACCACAAAAAGGAAGTG
GACCGCATCGTCTTTGAAGAGCCTCCCCTCCCCCCTTCTTCCCCCCCTTC
CTCCTCCCCTTCAGGTGGATTTCTTCTAGTACCTGACCCTAAATGGAAAT
CACACCCTAACCCCTCTGACACTCCCAAAGAGGAATGGAGGCACCACTCT
TGCACTGCCGGTCTGGCGTGCCTCGCTATAGTCCACGACAGAGACATTGG
TTCCTTGCGAGATCTGAGACGTAAGCATGTGCCGCTGTTGAAAAACGTGT
TGGAGAAGGGTTTGAAGGCCATTGAGAAGGTGTATGGGGTTGGGCCGGAG
GAGATACGAGTGTTCGTGCATTATGTGCCACAGTTTTTCCACTTCCACGT
ACACTTCTCCCGCCTCAGCCTCGCTCACGGCATTGAGGTTGAACGGGCGC
ATCTCCTCTCTGATATAATCGACAAGATTGAGAACGCCCCACCAGGACAA
GAATATTACGAAAAAGCCTGTATTTCTTACACTGTTAAGAAGAGTGAGGA
AATCTTTAAGCGATTGCAACGAGGGCCAGGCAAATGA

Synonyms

Publications