jgi.p|Nanoce1779_2|580348, mRNA_2431 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580348
Unique Name	mRNA_2431
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1888
Alignment location	scaffold_5:335482..337523 -

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Properties


Property Name	Value
TranscriptId	580434
Track	FilteredModels2
ProteinId	580348

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:335482..337523 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580348	gene_2431	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580348	mRNA_2431-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2431	CDS_2431	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:335482..337523-
coding sequence from alignment at scaffold_5:335482..337523-

mRNA sequence

>mRNA_2431 ID=mRNA_2431|Name=jgi.p|Nanoce1779_2|580348|organism=Nannochloropsis oceanica|type=mRNA|length=1888bp
ACGACAGAATTTCACCACATTTCACAGGTCTCTATCACTGCTATGGGTTG
GCGACGCCGACTCGAGGAAGCCAAGCAAAAACACAGGCCCCGGCTCAAGG
ACTGGGGCCGAGATGCGTTTGCAACTGATCGCAAGCTGGACTTTGTGGCC
CTGAATTACCTGCCTTCCCCTCACAGCCAGCACGATAAGCCTCAACAGCA
TAAAACAGGGATGGTGGACCGAATGCACTGTCGCGACCTGAGCCCGGAGG
CGTTTATTGATCAGTACGAGAAGCTGAGCAAGCCAGTGATCATCCAGGGT
GTGCCCGAGGCAGAGGGGTGGAAGGCCACGGATCGTTGGGCCTCGGACGG
CGCGCTGCGTCGACGCTTTCGCAAGTACTCGTTCAAGTGTGGAGAGGATG
ATGACGGACGGTCGATTCGAGTGCGACTGAAGCATTTTTTAAAGTACGTG
GGCAAGCAGAAGGATGACTCCCCGCTTTACATCTTCGATTCCACCTTTGA
CGACGACAAGGAAGCGAAGGCCTTACTGGACGACTACGCTGTGCCCTCCT
ACTTTCCCGATGACTTCTTTTCACTTGTGGGCGAGAAACGCCGGCCACCG
TACAGGTGGTTTTTGGTTGGGCCTCGACGGAGTGGTACGAGTTTGCATAT
CGACCCACTGGGAACGTCAGCCTGGAACACGGTGCTGACAGGCAAAAAAC
GCTGGATCTTGTTTCCTCCCTCCACGCCTCGGGACTTGGCCAAAGGCAAG
GCGTTGTATCGAAAGGGGGAGGATGATGAGCCCATTAATTATTTTGCGGA
TATTTTGCCGCGGTTGCGGGCGTTGCCGGCGAGTGAGGAGTTGGTTTTTT
ATGAGTTCATTCAGGAGGAGGGGGAGACGGTTTTCGTGCCCGGCGGATGG
TGGCATGCGGTGCTCAACCTAGAAGATTCCGTGGCCGTCACACAAAATTT
TGCGAGTCGCGTGAATTTCTCTGCAGTATGGCGAAAGACAAGAACGGGGA
GGAAGAAGATGGCTTGTCGGTGGTTGAAGAGATTGGAAGAGGTCTTCCCT
GAGCTGGCGGCAACAGCAAAGAAGTTGAATGAGGTGGATGGGTTTCGGAT
GCAATCGAAGAAGGAGAGGGAGGAGGCGAAGAGGAAGAAGGAGTGGGAAA
AGAAACGGCGGAGGAAGGAGAAGGAGGAAGAGAAGGAGAAGGCGAAGGAG
AAGAAGCGGGACCGTCGTGCAGGGTCGGATTCATCGTCGTCCTCGTCTTC
GTCTTCCTCCACTTCCTCCTCCTTTTCCTCCTCCTGCTCATTCGCATCAG
CGACGACCGTGGCAGCCGTGAGAGAAATGGCGGAAAAACGCAAGGGCGGG
TATGAAGAGAGGGATGTGGATGTGTCAAAGCGTGCGCGTGAGACGAACTG
AAGAGAATTAGATGTTTTTCACCAAATTGAGAGAGCGATTGCTACTGGTG
CTGTTGGTGCTGCTGGTACTGCCGACGCTGCTGTTTCCGGTAGCAATGCG
GCTGTTTCTGCAGGAAATGATAAGAGGTTGCTGTCACAGCACGAAATGAT
TAGAAATCTGGGGACGAAAGAGAGATGTCCAGTGGTGGAAATGTCCGGAC
GATAAGAGAGACCCCGACACATGGAGATCGTCTGAATTTCGGGAAGGAAA
AGGGAGTGAGAGGTGGAGAGATGGAGGGTGGGAAGAATAGCGCTACAAGA
TTTTGAAAACAAATTAGAGATTGATACACGCACATGTGTATCAGTCTAAA
ATGATGATAGATACACTCATACAAGTATTGATCTAAAAATAATATAAATA
CGGGTGGGTACACAAACGACGACAAAAATAAAAAATTAATATTAGCATCA
GGAGCAAAACCAATATCACCACCACCATCAACAATCAC

protein sequence of jgi.p|Nanoce1779_2|580348

>mRNA_2431-protein ID=mRNA_2431-protein|Name=jgi.p|Nanoce1779_2|580348|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MGWRRRLEEAKQKHRPRLKDWGRDAFATDRKLDFVALNYLPSPHSQHDKP
QQHKTGMVDRMHCRDLSPEAFIDQYEKLSKPVIIQGVPEAEGWKATDRWA
SDGALRRRFRKYSFKCGEDDDGRSIRVRLKHFLKYVGKQKDDSPLYIFDS
TFDDDKEAKALLDDYAVPSYFPDDFFSLVGEKRRPPYRWFLVGPRRSGTS
LHIDPLGTSAWNTVLTGKKRWILFPPSTPRDLAKGKALYRKGEDDEPINY
FADILPRLRALPASEELVFYEFIQEEGETVFVPGGWWHAVLNLEDSVAVT
QNFASRVNFSAVWRKTRTGRKKMACRWLKRLEEVFPELAATAKKLNEVDG
FRMQSKKEREEAKRKKEWEKKRRRKEKEEEKEKAKEKKRDRRAGSDSSSS
SSSSSSTSSSFSSSCSFASATTVAAVREMAEKRKGGYEERDVDVSKRARE
TN*

mRNA from alignment at scaffold_5:335482..337523-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2431 ID=mRNA_2431|Name=jgi.p|Nanoce1779_2|580348|organism=Nannochloropsis oceanica|type=mRNA|length=2042bp|location=Sequence derived from alignment at scaffold_5:335482..337523- (Nannochloropsis oceanica)
ACGACAGAATTTCACCACATTTCACAGGTCTCTATCACTGCTATGGGTTG
GCGACGCCGACTCGAGGAAGCCAAGCAAAAACACAGGCCCCGGCTCAAGG
ACTGGGGCCGAGATGCGTTTGCAACTGATCGCAAGCTGGACTTTGTGGCC
CTGAATTACCTGCCTTCCCCTCACAGCCAGCACGATAAGCCTCAACAGCA
TAAAACAGGGATGGTGGACCGAATGCACTGTCGCGACCTGAGCCCGGAGG
CGTTTATTGATCAGTACGAGAAGCTGAGCAAGCCAGTGATCATCCAGGGT
GTGCCCGAGGCAGAGGGGTGGAAGGCCACGGATCGTTGGGCCTCGGACGG
CGCGCTGCGTCGACGCTTTCGCAAGTACTCGTTCAAGTGTGGAGAGGATG
ATGACGGACGGTCGATTCGAGTGCGACTGAAGCATTTTTTAAAGTACGTG
GGCAAGCAGAAGGATGACTCCCCGCTTTACATCTTCGATTCCACCTTTGA
CGACGACAAGGAAGCGAAGGCCTTACTGGACGACTACGCTGTGCCCTCCT
ACTTTCCCGATGACTTCTTTTCACTTGTGGGCGAGAAACGCCGGCCACCG
TACAGGTGGTTTTTGGTTGGGCCTCGACGGAGTGGTACGAGTTTGCATAT
CGACCCACTGGGAACGTCAGCCTGGAACACGGTGCTGACAGGCAAAAAAC
GCTGGATCTTGTTTCCTCCCTCCACGCCTCGGGACTTGGCCAAAGGCAAG
GCGTTGTATCGAAAGGGGGAGGATGATGAGCCCATTAATTATTTTGCGGA
TATTTTGCCGCGGTTGCGGGCGTTGCCGGCGAGTGAGGAGTTGGTTTTTT
ATGAGTTCATTCAGGAGGAGGGGGAGACGGTTTTCGTGCCCGGCGGATGG
TGGCATGGTAAGTACCTTTGAATAACGATGTTTGTTTTCATTTAGCTTTT
GGTGAAACGTACATCGACATCTCTGCTCGATACATGCACTTATTTTTTTT
TACACTTATTCTTATCCTCCCTTCCTCCCTCCGTCCCTCCCTCCGTCCCT
CCCTCACAAAGCGGTGCTCAACCTAGAAGATTCCGTGGCCGTCACACAAA
ATTTTGCGAGTCGCGTGAATTTCTCTGCAGTATGGCGAAAGACAAGAACG
GGGAGGAAGAAGATGGCTTGTCGGTGGTTGAAGAGATTGGAAGAGGTCTT
CCCTGAGCTGGCGGCAACAGCAAAGAAGTTGAATGAGGTGGATGGGTTTC
GGATGCAATCGAAGAAGGAGAGGGAGGAGGCGAAGAGGAAGAAGGAGTGG
GAAAAGAAACGGCGGAGGAAGGAGAAGGAGGAAGAGAAGGAGAAGGCGAA
GGAGAAGAAGCGGGACCGTCGTGCAGGGTCGGATTCATCGTCGTCCTCGT
CTTCGTCTTCCTCCACTTCCTCCTCCTTTTCCTCCTCCTGCTCATTCGCA
TCAGCGACGACCGTGGCAGCCGTGAGAGAAATGGCGGAAAAACGCAAGGG
CGGGTATGAAGAGAGGGATGTGGATGTGTCAAAGCGTGCGCGTGAGACGA
ACTGAAGAGAATTAGATGTTTTTCACCAAATTGAGAGAGCGATTGCTACT
GGTGCTGTTGGTGCTGCTGGTACTGCCGACGCTGCTGTTTCCGGTAGCAA
TGCGGCTGTTTCTGCAGGAAATGATAAGAGGTTGCTGTCACAGCACGAAA
TGATTAGAAATCTGGGGACGAAAGAGAGATGTCCAGTGGTGGAAATGTCC
GGACGATAAGAGAGACCCCGACACATGGAGATCGTCTGAATTTCGGGAAG
GAAAAGGGAGTGAGAGGTGGAGAGATGGAGGGTGGGAAGAATAGCGCTAC
AAGATTTTGAAAACAAATTAGAGATTGATACACGCACATGTGTATCAGTC
TAAAATGATGATAGATACACTCATACAAGTATTGATCTAAAAATAATATA
AATACGGGTGGGTACACAAACGACGACAAAAATAAAAAATTAATATTAGC
ATCAGGAGCAAAACCAATATCACCACCACCATCAACAATCAC

Coding sequence (CDS) from alignment at scaffold_5:335482..337523-

>mRNA_2431 ID=mRNA_2431|Name=jgi.p|Nanoce1779_2|580348|organism=Nannochloropsis oceanica|type=CDS|length=2718bp|location=Sequence derived from alignment at scaffold_5:335482..337523- (Nannochloropsis oceanica)
CGGTGCTCAACCTAGAAGATTCCGTGGCCGTCACACAAAATTTTGCGAGT
CGCGTGAATTTCTCTGCAGTATGGCGAAAGACAAGAACGGGGAGGAAGAA
GATGGCTTGTCGGTGGTTGAAGAGATTGGAAGAGGTCTTCCCTGAGCTGG
CGGCAACAGCAAAGAAGTTGAATGAGGTGGATGGGTTTCGGATGCAATCG
AAGAAGGAGAGGGAGGAGGCGAAGAGGAAGAAGGAGTGGGAAAAGAAACG
GCGGAGGAAGGAGAAGGAGGAAGAGAAGGAGAAGGCGAAGGAGAAGAAGC
GGGACCGTCGTGCAGGGTCGGATTCATCGTCGTCCTCGTCTTCGTCTTCC
TCCACTTCCTCCTCCTTTTCCTCCTCCTGCTCATTCGCATCAGCGACGAC
CGTGGCAGCCGTGAGAGAAATGGCGGAAAAACGCAAGGGCGGGTATGAAG
AGAGGGATGTGGATGTGTCAAAGCGTGCGCGTGAGACGAACTGAATGGGT
TGGCGACGCCGACTCGAGGAAGCCAAGCAAAAACACAGGCCCCGGCTCAA
GGACTGGGGCCGAGATGCGTTTGCAACTGATCGCAAGCTGGACTTTGTGG
CCCTGAATTACCTGCCTTCCCCTCACAGCCAGCACGATAAGCCTCAACAG
CATAAAACAGGGATGGTGGACCGAATGCACTGTCGCGACCTGAGCCCGGA
GGCGTTTATTGATCAGTACGAGAAGCTGAGCAAGCCAGTGATCATCCAGG
GTGTGCCCGAGGCAGAGGGGTGGAAGGCCACGGATCGTTGGGCCTCGGAC
GGCGCGCTGCGTCGACGCTTTCGCAAGTACTCGTTCAAGTGTGGAGAGGA
TGATGACGGACGGTCGATTCGAGTGCGACTGAAGCATTTTTTAAAGTACG
TGGGCAAGCAGAAGGATGACTCCCCGCTTTACATCTTCGATTCCACCTTT
GACGACGACAAGGAAGCGAAGGCCTTACTGGACGACTACGCTGTGCCCTC
CTACTTTCCCGATGACTTCTTTTCACTTGTGGGCGAGAAACGCCGGCCAC
CGTACAGGTGGTTTTTGGTTGGGCCTCGACGGAGTGGTACGAGTTTGCAT
ATCGACCCACTGGGAACGTCAGCCTGGAACACGGTGCTGACAGGCAAAAA
ACGCTGGATCTTGTTTCCTCCCTCCACGCCTCGGGACTTGGCCAAAGGCA
AGGCGTTGTATCGAAAGGGGGAGGATGATGAGCCCATTAATTATTTTGCG
GATATTTTGCCGCGGTTGCGGGCGTTGCCGGCGAGTGAGGAGTTGGTTTT
TTATGAGTTCATTCAGGAGGAGGGGGAGACGGTTTTCGTGCCCGGCGGAT
GGTGGCATGCGGTGCTCAACCTAGAAGATTCCGTGGCCGTCACACAAAAT
TTTGCGAGTCGCGTGAATTTCTCTGCAGTATGGCGAAAGACAAGAACGGG
GAGGAAGAAGATGGCTTGTCGGTGGTTGAAGAGATTGGAAGAGGTCTTCC
CTGAGCTGGCGGCAACAGCAAAGAAGTTGAATGAGGTGGATGGGTTTCGG
ATGCAATCGAAGAAGGAGAGGGAGGAGGCGAAGAGGAAGAAGGAGTGGGA
AAAGAAACGGCGGAGGAAGGAGAAGGAGGAAGAGAAGGAGAAGGCGAAGG
AGAAGAAGCGGGACCGTCGTGCAGGGTCGGATTCATCGTCGTCCTCGTCT
TCGTCTTCCTCCACTTCCTCCTCCTTTTCCTCCTCCTGCTCATTCGCATC
AGCGACGACCGTGGCAGCCGTGAGAGAAATGGCGGAAAAACGCAAGGGCG
GGTATGAAGAGAGGGATGTGGATGTGTCAAAGCGTGCGCGTGAGACGAAC
TGAATGGGTTGGCGACGCCGACTCGAGGAAGCCAAGCAAAAACACAGGCC
CCGGCTCAAGGACTGGGGCCGAGATGCGTTTGCAACTGATCGCAAGCTGG
ACTTTGTGGCCCTGAATTACCTGCCTTCCCCTCACAGCCAGCACGATAAG
CCTCAACAGCATAAAACAGGGATGGTGGACCGAATGCACTGTCGCGACCT
GAGCCCGGAGGCGTTTATTGATCAGTACGAGAAGCTGAGCAAGCCAGTGA
TCATCCAGGGTGTGCCCGAGGCAGAGGGGTGGAAGGCCACGGATCGTTGG
GCCTCGGACGGCGCGCTGCGTCGACGCTTTCGCAAGTACTCGTTCAAGTG
TGGAGAGGATGATGACGGACGGTCGATTCGAGTGCGACTGAAGCATTTTT
TAAAGTACGTGGGCAAGCAGAAGGATGACTCCCCGCTTTACATCTTCGAT
TCCACCTTTGACGACGACAAGGAAGCGAAGGCCTTACTGGACGACTACGC
TGTGCCCTCCTACTTTCCCGATGACTTCTTTTCACTTGTGGGCGAGAAAC
GCCGGCCACCGTACAGGTGGTTTTTGGTTGGGCCTCGACGGAGTGGTACG
AGTTTGCATATCGACCCACTGGGAACGTCAGCCTGGAACACGGTGCTGAC
AGGCAAAAAACGCTGGATCTTGTTTCCTCCCTCCACGCCTCGGGACTTGG
CCAAAGGCAAGGCGTTGTATCGAAAGGGGGAGGATGATGAGCCCATTAAT
TATTTTGCGGATATTTTGCCGCGGTTGCGGGCGTTGCCGGCGAGTGAGGA
GTTGGTTTTTTATGAGTTCATTCAGGAGGAGGGGGAGACGGTTTTCGTGC
CCGGCGGATGGTGGCATG

Synonyms

Publications