jgi.p|Nanoce1779_2|580344, mRNA_2430 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580344
Unique NamemRNA_2430
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1308
Alignment locationscaffold_5:331882..333189 -

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Properties
Property NameValue
TranscriptId580430
TrackFilteredModels2
ProteinId580344
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:331882..333189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580344gene_2430Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580344mRNA_2430-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2430CDS_2430Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2430 ID=mRNA_2430|Name=jgi.p|Nanoce1779_2|580344|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp
CCTCCACCAGTCCCTCCACCACTCCAATCAACTCCAAAGTCCGCTCAGCA
CTCTCAAACTCGCAGGCCCTCCTTCCCTCCTTTCCTCCCTCCCTCTCCCC
TTCCAGGTACGTCGTCTGCAAATGTCCGAGGACAGCAGCAGCTATTTCTC
CATCTGGATCATCCCGATACATCCTCACTGCTTTACCCAGAGTTCTCCAC
GCTTCCTCCCACATCACCGCCTTCGCCGCTTCAAATCCAGCAGCAGCAGC
TCCATTGCGCTCTGGAGAGGAAGGATCGCCACCACTACTGTTGCTGTTGC
TGCTCCTCCCAGCGGCAGTGTGCTGCAGCGCCCCATCCACTACCTTCATT
CCCACTGCTGCTCTCACCGGACCTTGCAAGACCACACCTGTCTTGCTCGC
CAGCTGCAGCAACAAAAACAACAAGGCTGCTCCCGCCAGTGCCACTTCCG
CGTTCGGCGGCCTCGCCCCGAGGATGACAGCAGCGTATGCGGTCTGTAAG
GAGCAGGTCCACAGGGAGGGGTACCAGGGCTCGGACCAGAGGGAGCGGAA
GAATGTGCGATGGATGCGGCCGAGGCCTTGGAGGACCAGGACTCGGGTTT
CCGACCATTGCTTTTGGGCGGTGTCGCGGCTGTGGTGTAGAATGACCTTG
GGCGCGCATTTCTTGCTTCCTCCTGGCTCTGCCGTCTGCTGCTGCGGGTG
TCGCAGGGTCCTTCTATTTTCTCCCATCTCTTTCTCGTCCTCCTCTCCTG
CAGATGAGGTCTTGTCCTCAATGGCCCGGACAAGGCTCGTCACCACCTCC
ACCCTCTCCCCCCAACTTTCCGCGGGAAACGCCGATCCATGCCCCACAAA
ACACGAGAACAATGTGTTTACCGCACAATTCCTCACTTCTGGCCTGGAGT
CTACAGCCAACCTACCCCCTAATTCCCTCAAAATGGCATCCCAAATCACC
GTCGCCTCCTCCGCCTCTCTCCCTCCCTCCCCTTTCCCTTTTTGTGGGCC
ACACCGACGGGAGACGAAGTCAGCAACAGTCCAAATCATCCCTACAGCAG
TCAGAGAAATATTCACGTCCAATGCCTGAGACGCAAATGCCCCTATACAA
GTTATACAACGAGGTAGATACCGAAGCGGGACGCTCTCCAGGTTGTCGTC
GACAGTAAGTTTCAAACTCCGAAAGGCAAGGGGAAGGCAGGCTTCCCCCC
ATGCGCCTTCTCCTCTTTCCCTCTTCTCTTCTGGAGCAGCGGCACTTGTA
GCAATGAGGGAAGGCAAAGAAGAAATCGAACGTAAGCCAGGGGCATCCAG
ATTCTGGC
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protein sequence of jgi.p|Nanoce1779_2|580344

>mRNA_2430-protein ID=mRNA_2430-protein|Name=jgi.p|Nanoce1779_2|580344|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MTAAYAVCKEQVHREGYQGSDQRERKNVRWMRPRPWRTRTRVSDHCFWAV
SRLWCRMTLGAHFLLPPGSAVCCCGCRRVLLFSPISFSSSSPADEVLSSM
ARTRLVTTSTLSPQLSAGNADPCPTKHENNVFTAQFLTSGLESTANLPPN
SLKMASQITVASSASLPPSPFPFCGPHRRETKSATVQIIPTAVREIFTSN
A*
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mRNA from alignment at scaffold_5:331882..333189-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2430 ID=mRNA_2430|Name=jgi.p|Nanoce1779_2|580344|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp|location=Sequence derived from alignment at scaffold_5:331882..333189- (Nannochloropsis oceanica)
CCTCCACCAGTCCCTCCACCACTCCAATCAACTCCAAAGTCCGCTCAGCA
CTCTCAAACTCGCAGGCCCTCCTTCCCTCCTTTCCTCCCTCCCTCTCCCC
TTCCAGGTACGTCGTCTGCAAATGTCCGAGGACAGCAGCAGCTATTTCTC
CATCTGGATCATCCCGATACATCCTCACTGCTTTACCCAGAGTTCTCCAC
GCTTCCTCCCACATCACCGCCTTCGCCGCTTCAAATCCAGCAGCAGCAGC
TCCATTGCGCTCTGGAGAGGAAGGATCGCCACCACTACTGTTGCTGTTGC
TGCTCCTCCCAGCGGCAGTGTGCTGCAGCGCCCCATCCACTACCTTCATT
CCCACTGCTGCTCTCACCGGACCTTGCAAGACCACACCTGTCTTGCTCGC
CAGCTGCAGCAACAAAAACAACAAGGCTGCTCCCGCCAGTGCCACTTCCG
CGTTCGGCGGCCTCGCCCCGAGGATGACAGCAGCGTATGCGGTCTGTAAG
GAGCAGGTCCACAGGGAGGGGTACCAGGGCTCGGACCAGAGGGAGCGGAA
GAATGTGCGATGGATGCGGCCGAGGCCTTGGAGGACCAGGACTCGGGTTT
CCGACCATTGCTTTTGGGCGGTGTCGCGGCTGTGGTGTAGAATGACCTTG
GGCGCGCATTTCTTGCTTCCTCCTGGCTCTGCCGTCTGCTGCTGCGGGTG
TCGCAGGGTCCTTCTATTTTCTCCCATCTCTTTCTCGTCCTCCTCTCCTG
CAGATGAGGTCTTGTCCTCAATGGCCCGGACAAGGCTCGTCACCACCTCC
ACCCTCTCCCCCCAACTTTCCGCGGGAAACGCCGATCCATGCCCCACAAA
ACACGAGAACAATGTGTTTACCGCACAATTCCTCACTTCTGGCCTGGAGT
CTACAGCCAACCTACCCCCTAATTCCCTCAAAATGGCATCCCAAATCACC
GTCGCCTCCTCCGCCTCTCTCCCTCCCTCCCCTTTCCCTTTTTGTGGGCC
ACACCGACGGGAGACGAAGTCAGCAACAGTCCAAATCATCCCTACAGCAG
TCAGAGAAATATTCACGTCCAATGCCTGAGACGCAAATGCCCCTATACAA
GTTATACAACGAGGTAGATACCGAAGCGGGACGCTCTCCAGGTTGTCGTC
GACAGTAAGTTTCAAACTCCGAAAGGCAAGGGGAAGGCAGGCTTCCCCCC
ATGCGCCTTCTCCTCTTTCCCTCTTCTCTTCTGGAGCAGCGGCACTTGTA
GCAATGAGGGAAGGCAAAGAAGAAATCGAACGTAAGCCAGGGGCATCCAG
ATTCTGGC
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Coding sequence (CDS) from alignment at scaffold_5:331882..333189-

>mRNA_2430 ID=mRNA_2430|Name=jgi.p|Nanoce1779_2|580344|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_5:331882..333189- (Nannochloropsis oceanica)
ATGACAGCAGCGTATGCGGTCTGTAAGGAGCAGGTCCACAGGGAGGGGTA
CCAGGGCTCGGACCAGAGGGAGCGGAAGAATGTGCGATGGATGCGGCCGA
GGCCTTGGAGGACCAGGACTCGGGTTTCCGACCATTGCTTTTGGGCGGTG
TCGCGGCTGTGGTGTAGAATGACCTTGGGCGCGCATTTCTTGCTTCCTCC
TGGCTCTGCCGTCTGCTGCTGCGGGTGTCGCAGGGTCCTTCTATTTTCTC
CCATCTCTTTCTCGTCCTCCTCTCCTGCAGATGAGGTCTTGTCCTCAATG
GCCCGGACAAGGCTCGTCACCACCTCCACCCTCTCCCCCCAACTTTCCGC
GGGAAACGCCGATCCATGCCCCACAAAACACGAGAACAATGTGTTTACCG
CACAATTCCTCACTTCTGGCCTGGAGTCTACAGCCAACCTACCCCCTAAT
TCCCTCAAAATGGCATCCCAAATCACCGTCGCCTCCTCCGCCTCTCTCCC
TCCCTCCCCTTTCCCTTTTTGTGGGCCACACCGACGGGAGACGAAGTCAG
CAACAGTCCAAATCATCCCTACAGCAGTCAGAGAAATATTCACGTCCAAT
GCCTGA
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Synonyms
Publications