jgi.p|Nanoce1779_2|328985, mRNA_2429 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|328985
Unique NamemRNA_2429
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1028
Alignment locationscaffold_5:328130..329883 +

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Properties
Property NameValue
TranscriptId329071
TrackFilteredModels2
ProteinId328985
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:328130..329883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|328985gene_2429Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|328985mRNA_2429-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2429CDS_2429Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2429 ID=mRNA_2429|Name=jgi.p|Nanoce1779_2|328985|organism=Nannochloropsis oceanica|type=mRNA|length=1028bp
ACAGGCCAGACATGCCAAGACAGGCCTGATTCTCCTACTATTCCAAGCCA
ACTTCCCCAAACCCAAATTTCAAATGGATTCCTCCTCGCTTGTAACCACG
CCGATTGTAACAGAAGCATGATTTTGCATGCCCTGGGTGCCATTACGCAT
TTGATGAACAAAGATGCCATCTCGCCTTCTGACGCCCCGAATATCTTGCG
TGTTCTGGCCATTCAGGCCGTTTCTCCTTCTGCGGCGGCGCCTGACGTGC
ATGTTAAAGTCCTACAAACCCTTCTCCTAACCATTACTTGGCGCTCGTCT
GATTTATCAGAAGACATGCTCGCCACAGCCGTCATCGTATGCATTCAATT
GACAGAGCACCGGAATGCCACTGTGAGAAATGCGGCACAGGCCACGCTTA
GACAGATTGTCAGTTTGATATTTGATCGGGTCGCAGACATACAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGGGGGGGGAGAAGCTTACAGGAAGAGG
TAGTGGGGGGTTAGTACCAAAGGAGGATAAAGAGAGGGAGAAAGGGCTGG
ACTGGTCCTCAATTGGTGCCTCTCATTCCCCAAAACCCGTGTCTGCAGCG
CCAGCTGTTATCACCACCAGCACCAGCACCAGCATCAGCACTGATGGCGA
CTTGCCTGAATTAGCAGGGCTGACGCCTGTGGAAAGGTGTGCATACTATT
TGATCCAAGACTTGTGCTTAGTCTGTCGGGGGGAAGGAGGGGCATGGGTC
AAGCATCTGCATATATCCCCTGTGTTGGGGAGTAATGCTTGCGTTGGATG
TCCTGGCGATGGTGTGTGGGGATGCGAAGCTGTGTGTGTGCGCCTTTCAA
AATTATGATTTGTATGAGGAGTGCACAAATGTCTTCGCGGGAATGATACA
CCACCTGAGTCGGTTTGTTGTGGAGGGGTCCTTGCCCTCCTTCCCTCCAT
CCCTCGCGTCCTCCTCTATTTTGGCCGGGATGGGGGGGACAGGCTGGACG
GCCAAGGGGCTTCCACAGGTGGCTGGGA
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protein sequence of jgi.p|Nanoce1779_2|328985

>mRNA_2429-protein ID=mRNA_2429-protein|Name=jgi.p|Nanoce1779_2|328985|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MILHALGAITHLMNKDAISPSDAPNILRVLAIQAVSPSAAAPDVHVKVLQ
TLLLTITWRSSDLSEDMLATAVIVCIQLTEHRNATVRNAAQATLRQIVSL
IFDRVADIQQQQQQQQQQQGGEKLTGRGSGGLVPKEDKEREKGLDWSSIG
ASHSPKPVSAAPAVITTSTSTSISTDGDLPELAGLTPVERCAYYLIQDLC
LVCRGEGGAWVKHLHISPVLGSNACVGCPGDGVWGCEAVCVRLSKL*
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mRNA from alignment at scaffold_5:328130..329883+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2429 ID=mRNA_2429|Name=jgi.p|Nanoce1779_2|328985|organism=Nannochloropsis oceanica|type=mRNA|length=1754bp|location=Sequence derived from alignment at scaffold_5:328130..329883+ (Nannochloropsis oceanica)
ACAGGCCAGACATGCCAAGACAGGCCTGATTCTCCTACTATTCCAAGCCA
ACTTCCCCAAACCCAAATTTCAAATGGAGTTCCTCCGCATAGTCGAAGAT
GACCTCCGGGCCCTCTCCGTTGAAGCCAGGAAAAAGCACCCCGTCGTCAA
GGAAGCCGCCGAGCGCGGCATCGTTAAGCTACGGGCCTTGCGAGAGCAAT
ACGCGGCCGCCGTCCGGGAATCAGGAGAAAGTCTACCCGTGTCGCGCCTG
AGGTCCCAGGAGCTTCTTCGTCCTTTCCTCCTCGCTTGTAACCACGCCGA
TTGTAACAGAAGCATGATTTTGCATGCCCTGGGTGCCATTACGCATTTGA
TGAACAAAGATGCCATCTCGCCTTCTGACGCCCCGAATATCTTGCGTGTT
CTGGCCATTCAGGCCGTTTCTCCTTCTGCGGCGGCGCCTGACGTGCATGT
TAAAGTCCTACAAACCCTTCTCCTAACCATTACTTGGCGCTCGTCTGATT
TATCAGAAGACATGCTCGCCACAGCCGTCATCGTATGCATTCAATTGACA
GAGCACCGGAATGCCACTGTGAGAAATGCGGCACAGGCCACGCTTAGACA
GATTGTCAGTTTGATATTTGATCGGGTCGCAGACATACAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGGGGGGGGAGAAGCTTACAGGAAGAGGTAGT
GGGGGGTTAGTACCAAAGGAGGATAAAGAGAGGGAGAAAGGGCTGGACTG
GTCCTCAATTGGTGCCTCTCATTCCCCAAAACCCGTGTCTGCAGCGCCAG
CTGTTATCACCACCAGCACCAGCACCAGCATCAGCACTGATGGCGACTTG
CCTGAATTAGCAGGGCTGACGCCTGTGGAAAGGTGTGCATACTATTTGAT
CCAAGACTTGTGCTTAGTCTGTCGGGGGGAAGGAGGGGCATGGGTCAAGC
ATCTGCATATATCCCCTGTGTTGGGGATGGAAATAATTGAGCAAATTCTG
TCGCAACACCCAGACTTGTTTAGGGGAGAGGGGGGAGGGCAAGCTTGTGG
GGGAAAAGTGACGGGACGGAGGGAGGGAAGGAATGCGTATGGAGAGGCGT
TGCGGAATCAGGTGTGTCCTTTGATCGTGCAGACGTTGAGGTCGGAGATG
GATTTTCCGTTGCTGGTGCGATTGATGCGAACAATCGGTACGATTTTGAG
TGAGTTTATGGGGGAGACCTTGGTACCACAATGTGAGGTTATCTTGGCGA
TGCTTTTTCAATTGATTTCTTCGTCAAGTGATGTGTTGGGAGGAGGGGGA
GGAGGAGGAGAGGGAGGAAGGGAGGGAGGGACTGTGGGAGGGGGAGGAGC
AGGGGGGGCAGCGAGCGCGATTGCGAGTACAGCGAATAGTTTCTTAGGAG
CGGCGGTGGCTTTTGGGGCGGGGGCTGTAGGGGTTGGTGGTGGTGAAGCA
GGAGCAGGAGGAGGGAGGGAGGGAGGGAAGAGGGGAGGGAAGATTGGGTT
GTGGACAGTAATGCTTGCGTTGGATGTCCTGGCGATGGTGTGTGGGGATG
CGAAGCTGTGTGTGTGCGCCTTTCAAAATTATGATTTGTATGAGGAGTGC
ACAAATGTCTTCGCGGGAATGATACACCACCTGAGTCGGTTTGTTGTGGA
GGGGTCCTTGCCCTCCTTCCCTCCATCCCTCGCGTCCTCCTCTATTTTGG
CCGGGATGGGGGGGACAGGCTGGACGGCCAAGGGGCTTCCACAGGTGGCT
GGGA
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Coding sequence (CDS) from alignment at scaffold_5:328130..329883+

>mRNA_2429 ID=mRNA_2429|Name=jgi.p|Nanoce1779_2|328985|organism=Nannochloropsis oceanica|type=CDS|length=1482bp|location=Sequence derived from alignment at scaffold_5:328130..329883+ (Nannochloropsis oceanica)
ATGATTTTGCATGCCCTGGGTGCCATTACGCATTTGATGAACAAAGATGC
CATCTCGCCTTCTGACGCCCCGAATATCTTGCGTGTTCTGGCCATTCAGG
CCGTTTCTCCTTCTGCGGCGGCGCCTGACGTGCATGTTAAAGTCCTACAA
ACCCTTCTCCTAACCATTACTTGGCGCTCGTCTGATTTATCAGAAGACAT
GCTCGCCACAGCCGTCATCGTATGCATTCAATTGACAGAGCACCGGAATG
CCACTGTGAGAAATGCGGCACAGGCCACGCTTAGACAGATTGTCAGTTTG
ATATTTGATCGGGTCGCAGACATACAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGGGGGGGGAGAAGCTTACAGGAAGAGGTAGTGGGGGGTTAGTAC
CAAAGGAGGATAAAGAGAGGGAGAAAGGGCTGGACTGGTCCTCAATTGGT
GCCTCTCATTCCCCAAAACCCGTGTCTGCAGCGCCAGCTGTTATCACCAC
CAGCACCAGCACCAGCATCAGCACTGATGGCGACTTGCCTGAATTAGCAG
GGCTGACGCCTGTGGAAAGGTGTGCATACTATTTGATCCAAGACTTGTGC
TTAGTCTGTCGGGGGGAAGGAGGGGCATGGGTCAAGCATCTGCATATATC
CCCTGTGTTGGGGAGTAATGCTTGCGTTGGATGTCCTGGCGATGGTGTGT
GGGGATGCGAAGCTGTGTGTGTGCGCCTTTCAAAATTATGAATGATTTTG
CATGCCCTGGGTGCCATTACGCATTTGATGAACAAAGATGCCATCTCGCC
TTCTGACGCCCCGAATATCTTGCGTGTTCTGGCCATTCAGGCCGTTTCTC
CTTCTGCGGCGGCGCCTGACGTGCATGTTAAAGTCCTACAAACCCTTCTC
CTAACCATTACTTGGCGCTCGTCTGATTTATCAGAAGACATGCTCGCCAC
AGCCGTCATCGTATGCATTCAATTGACAGAGCACCGGAATGCCACTGTGA
GAAATGCGGCACAGGCCACGCTTAGACAGATTGTCAGTTTGATATTTGAT
CGGGTCGCAGACATACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGG
GGGGGAGAAGCTTACAGGAAGAGGTAGTGGGGGGTTAGTACCAAAGGAGG
ATAAAGAGAGGGAGAAAGGGCTGGACTGGTCCTCAATTGGTGCCTCTCAT
TCCCCAAAACCCGTGTCTGCAGCGCCAGCTGTTATCACCACCAGCACCAG
CACCAGCATCAGCACTGATGGCGACTTGCCTGAATTAGCAGGGCTGACGC
CTGTGGAAAGGTGTGCATACTATTTGATCCAAGACTTGTGCTTAGTCTGT
CGGGGGGAAGGAGGGGCATGGGTCAAGCATCTGCATATATCCCCTGTGTT
GGGGAGTAATGCTTGCGTTGGATGTCCTGGCGATGGTGTGTGGGGATGCG
AAGCTGTGTGTGTGCGCCTTTCAAAATTATGA
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Synonyms
Publications