jgi.p|Nanoce1779_2|580338, mRNA_2428 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580338
Unique NamemRNA_2428
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length666
Alignment locationscaffold_5:326664..327554 -

Link to JBrowse

Properties
Property NameValue
TranscriptId580424
TrackFilteredModels2
ProteinId580338
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:326664..327554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580338gene_2428Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580338mRNA_2428-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2428CDS_2428Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2428 ID=mRNA_2428|Name=jgi.p|Nanoce1779_2|580338|organism=Nannochloropsis oceanica|type=mRNA|length=666bp
ACAGAAACTTACATCAAGCGAATCCAAGCGAAACCAGTATGTCTTACGGC
TCTTACGGCGGCGGCGGTGGATCTCGGGGTGGTGGCGGGTACGTCCAATG
TCTTGACTTTCTTTCCCTCCCATTCGCAGGGTTCTTCGATTCCATGGCCC
ACTCATTTTCCTTAACACGCCCTTTTTGTTCCCCACACGCATATGCGTAT
GCACTTGTGTCCTCATTCCTTTCCGTTTACTCATTAGCAATGACGGTGGC
AGATGCATGGGCGGATTTGAATTCTGTATGTCTATCACGATGGTCTCTCG
CGGCATCACATAAACCCTCTCCAAACCTCAAATCTCATCCACCCTTTCAC
TTTCTCTTTACGCGCACGTGTGACCTTTGCTCATTCTCTTTCTCTTCCTT
CCAGCTACGGCGGCGGCGGCAGCTATGGTGGTGGCGGCAGTGGTTACGGC
AGGTATGGTGCGCTCTTTCGCGTGTCTTATTGTGCTTGTGCCTGTATGTG
CATTCATCCGTGTCACTGACAGGAATCAAACTACGTATTGTATGTGTCAC
CTCACACAATTTTCTTTTCATCCCACACACAACGCCATATTTCAACTCTC
ATTTTCCTCTCCTACACTCGCCCTCATATTCCCTTCTCTCTTCCTTACGA
AATCAATAGCTACGGC
back to top

protein sequence of jgi.p|Nanoce1779_2|580338

>mRNA_2428-protein ID=mRNA_2428-protein|Name=jgi.p|Nanoce1779_2|580338|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MSYGSYGGGGGSRGGGGYVQCLDFLSLPFAGFFDSMAHSFSLTRPFCSPH
AYAYALVSSFLSVYSLAMTVADAWADLNSVCLSRWSLAASHKPSPNLKSH
PPFHFLFTRTCDLCSFSFSSFQLRRRRQLWWWRQWLRQVWCALSRVLLCL
CLYVHSSVSLTGIKLRIVCVTSHNFLFIPHTTPYFNSHFPLLHSPSYSLL
SSLRNQ*
back to top

mRNA from alignment at scaffold_5:326664..327554-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2428 ID=mRNA_2428|Name=jgi.p|Nanoce1779_2|580338|organism=Nannochloropsis oceanica|type=mRNA|length=891bp|location=Sequence derived from alignment at scaffold_5:326664..327554- (Nannochloropsis oceanica)
ACAGAAACTTACATCAAGCGAATCCAAGCGAAACCAGTATGTCTTACGGC
TCTTACGGCGGCGGCGGTGGATCTCGGGGTGGTGGCGGGTACGTCCAATG
TCTTGACTTTCTTTCCCTCCCATTCGCAGGGTTCTTCGATTCCATGGCCC
ACTCATTTTCCTTAACACGCCCTTTTTGTTCCCCACACGCATATGCGTAT
GCACTTGTGTCCTCATTCCTTTCCGTTTACTCATTAGCAATGACGGTGGC
AGATGCATGGGCGGATTTGAATTCTGTATGTCTATCACGATGGTCTCTCG
CGGCATCACATAAACCCTCTCCAAACCTCAAATCTCATCCACCCTTTCAC
TTTCTCTTTACGCGCACGTGTGACCTTTGCTCATTCTCTTTCTCTTCCTT
CCAGCTACGGCGGCGGCGGCAGGTACGTTTCATTGCACTTATCTATCTAC
CTAGCTCAAGGTAGTTGTATGCGTGCTCGTGTGCCAGCCCGACTGCCTAC
CCCAATCTTGTATGCGTGCTCGTGTGCCAGCCCGACTGCCTACCCCAATC
TTCTTCCTTTGATCAACGTGCTCACCTCCCCTCTTCCACGCGCACACACG
CTTTGAATATGATCGGCATGCCTTTTCTCCTCTCTCTCACACATTAGCTA
TGGTGGTGGCGGCAGTGGTTACGGCAGGTATGGTGCGCTCTTTCGCGTGT
CTTATTGTGCTTGTGCCTGTATGTGCATTCATCCGTGTCACTGACAGGAA
TCAAACTACGTATTGTATGTGTCACCTCACACAATTTTCTTTTCATCCCA
CACACAACGCCATATTTCAACTCTCATTTTCCTCTCCTACACTCGCCCTC
ATATTCCCTTCTCTCTTCCTTACGAAATCAATAGCTACGGC
back to top

Coding sequence (CDS) from alignment at scaffold_5:326664..327554-

>mRNA_2428 ID=mRNA_2428|Name=jgi.p|Nanoce1779_2|580338|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_5:326664..327554- (Nannochloropsis oceanica)
CTATGGTGGTGGCGGCAGTGGTTACGGCAGGTATGGTGCGCTCTTTCGCG
TGTCTTATTGTGCTTGTGCCTGTATGTGCATTCATCCGTGTCACTGACAG
GAATCAAACTACGTATTGTATGTGTCACCTCACACAATTTTCTTTTCATC
CCACACACAACGCCATATTTCAACTCTCATTTTCCTCTCCTACACTCGCC
CTCATATTCCCTTCTCTCTTCCTTACGAAATCAATAGATGTCTTACGGCT
CTTACGGCGGCGGCGGTGGATCTCGGGGTGGTGGCGGGTACGTCCAATGT
CTTGACTTTCTTTCCCTCCCATTCGCAGGGTTCTTCGATTCCATGGCCCA
CTCATTTTCCTTAACACGCCCTTTTTGTTCCCCACACGCATATGCGTATG
CACTTGTGTCCTCATTCCTTTCCGTTTACTCATTAGCAATGACGGTGGCA
GATGCATGGGCGGATTTGAATTCTGTATGTCTATCACGATGGTCTCTCGC
GGCATCACATAAACCCTCTCCAAACCTCAAATCTCATCCACCCTTTCACT
TTCTCTTTACGCGCACGTGTGACCTTTGCTCATTCTCTTTCTCTTCCTTC
CAGCTACGGCGGCGGCGGCAGCTATGGTGGTGGCGGCAGTGGTTACGGCA
GGTATGGTGCGCTCTTTCGCGTGTCTTATTGTGCTTGTGCCTGTATGTGC
ATTCATCCGTGTCACTGACAGGAATCAAACTACGTATTGTATGTGTCACC
TCACACAATTTTCTTTTCATCCCACACACAACGCCATATTTCAACTCTCA
TTTTCCTCTCCTACACTCGCCCTCATATTCCCTTCTCTCTTCCTTACGAA
ATCAATAGATGTCTTACGGCTCTTACGGCGGCGGCGGTGGATCTCGGGGT
GGTGGCGGGTACGTCCAATGTCTTGACTTTCTTTCCCTCCCATTCGCAGG
GTTCTTCGATTCCATGGCCCACTCATTTTCCTTAACACGCCCTTTTTGTT
CCCCACACGCATATGCGTATGCACTTGTGTCCTCATTCCTTTCCGTTTAC
TCATTAGCAATGACGGTGGCAGATGCATGGGCGGATTTGAATTCTGTATG
TCTATCACGATGGTCTCTCGCGGCATCACATAAACCCTCTCCAAACCTCA
AATCTCATCCACCCTTTCACTTTCTCTTTACGCGCACGTGTGACCTTTGC
TCATTCTCTTTCTCTTCCTTCCAGCTACGGCGGCGGCGGCAG
back to top
Synonyms
Publications