jgi.p|Nanoce1779_2|580320, mRNA_2424 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580320
Unique Name	mRNA_2424
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1781
Alignment location	scaffold_5:308878..310658 +

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Properties


Property Name	Value
TranscriptId	580406
Track	FilteredModels2
ProteinId	580320

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:308878..310658 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580320	gene_2424	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580320	mRNA_2424-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2424	CDS_2424	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:308878..310658+
coding sequence from alignment at scaffold_5:308878..310658+

mRNA sequence

>mRNA_2424 ID=mRNA_2424|Name=jgi.p|Nanoce1779_2|580320|organism=Nannochloropsis oceanica|type=mRNA|length=1781bp
ACAGGAGGGCACGAGGCGCGACGCCCCCTCGAGTACAACAAGCCTTCATA
TGACGATCTCAAGATCCAAGCGCAGCTCGCAGCAATACTAATTAATCAGC
GCGAGCACGCTCACGCGCCAGGATGGTCAGCATCACCCCCCCACCCGCCT
ACGAGGGCCTGCCCACCTCCGTGCACGTCCACAGCAGTCCACATCGCCCT
TCACGAAAAAGCCTTTGGCAAGACTGGCGATGGATCCTCCTCATCGCAAT
ATCTTCCCTGGGCGCGATGATTGTTGTGCACCATGTAGGGGCGCGTGTTG
ACAAACACCTGGCAACGCGCCGGTTTACCGCTCGCTTGCAAGCCCAAGCA
CCGAGTGCCGAGGCGTACTGCCCCGAGTACACCCCCATCCTTCAACAAGC
CCTCGCTCCGTACGAAATTGTGGGTCGGACTGTGTCCAGTGTAGCAATGA
AAGAGGTGGATGACTTTGTCCGGGCTGGGGACGGAATGCGCATGCATATC
TCAGCTAAAAATGGCAAGGTCGCCACTACTCCCAAAGTCAATCGTGTAGA
TAAGTACCGCACAGGCAACCTGCTGGAGAATATTCAATTAGCCCAACAAC
TCTTTGGGAAGTTCCCGTTTGATTTTGAGTTCTGGTATAATGCGGGCGAC
TGTCCTGCGTTGCCTCGTGAGCTATTCCGTTCGAATGAAGGCGTCCTGCT
GCCGCCCTTGGGTTATGCAACTACCACGGGGCATTATGACGTTTCAATTC
CATATTCGACGCAGGCGATATGGAAGGAAGACGAGGACCTGTCGACGTTG
TCGGAGTTGGTGCACAAGCACCCGTGGGCTGGCAAGGCGAAGCGGGGTGT
GTGGAGGGGAAGTACGACCGGAGCAGTTCGAGTGGAGGAGTCGAATGTGT
GGGACTTACCCCGCGCGGTGTTGGTAAATGTATCCCTGCATAATCCCAAA
CTGCTCGATGCGCGTTTCACGGCGTGCAAGCATTGTGAGTCGCGTGTGTC
GTCTTTATTAGAAAAGGCTGGGTATGGATATGCCCCTTTCTTTACCTTTC
CCGAGCAGTTTAAGTACCAAGCGTTGATTGACGTGGACGGTAATTCGTGG
TCGAGCCGGTTTGCACAACTTCTGAGTATAAATTCTGTTGTTTTCAAACA
AGAGACCAAATATGTTGAGTTTTTCCGGCCCTTGGTGAAGCCGTACCGGC
ACTATATCCCCGTGAAAGGCGACTTGACAGATCTGGCTTCGAAGCTTGAT
AAAATGCTCGGGGAGGAAGGTAGAAAAAACACCACGGCCCAGCTGAAACT
CAGGGAAATCGGTGCGGAGAGCACGAGGTTATATATTCAGTCGCTGGTCC
CATCGAAGCAGTTGTGTTATTTACATCGAGTTTTGGATGCCTATAGTCGA
GTATATGCCCAGGCTGTGTTCAGTTGAAGAGGATTAGAGTGGAAGAAAAT
AGGTGAAGGGGGAATTGTCCACCAAATTAAATTCGCCTGCTTTGGATTTA
TCATCGTATGACATGGGACTGTGTGAAGAATGGGGAGGATATGCTGCTAA
ATTAGGAAAAGGGGCGAGGAAGGGAAAGAGAAGAATGGAAAGCATGCTTC
ATCCAAGAAACATTAGGCCGCGAGGGCTTGTGAATAGAAAGACACTCGTA
GGGAGATGAGCGCATCCACCTTTATTATGAAGAGTAGGTTGGCGTGCGCG
CTGCCCGCCATTTTGCAAGCACAAATACAAAGAGCCGAAACATACAACCA
TAAGATTAAAAAATAGCCTAGATCATTCATG

protein sequence of jgi.p|Nanoce1779_2|580320

>mRNA_2424-protein ID=mRNA_2424-protein|Name=jgi.p|Nanoce1779_2|580320|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MVSITPPPAYEGLPTSVHVHSSPHRPSRKSLWQDWRWILLIAISSLGAMI
VVHHVGARVDKHLATRRFTARLQAQAPSAEAYCPEYTPILQQALAPYEIV
GRTVSSVAMKEVDDFVRAGDGMRMHISAKNGKVATTPKVNRVDKYRTGNL
LENIQLAQQLFGKFPFDFEFWYNAGDCPALPRELFRSNEGVLLPPLGYAT
TTGHYDVSIPYSTQAIWKEDEDLSTLSELVHKHPWAGKAKRGVWRGSTTG
AVRVEESNVWDLPRAVLVNVSLHNPKLLDARFTACKHCESRVSSLLEKAG
YGYAPFFTFPEQFKYQALIDVDGNSWSSRFAQLLSINSVVFKQETKYVEF
FRPLVKPYRHYIPVKGDLTDLASKLDKMLGEEGRKNTTAQLKLREIGAES
TRLYIQSLVPSKQLCYLHRVLDAYSRVYAQAVFS*

mRNA from alignment at scaffold_5:308878..310658+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2424 ID=mRNA_2424|Name=jgi.p|Nanoce1779_2|580320|organism=Nannochloropsis oceanica|type=mRNA|length=1781bp|location=Sequence derived from alignment at scaffold_5:308878..310658+ (Nannochloropsis oceanica)
ACAGGAGGGCACGAGGCGCGACGCCCCCTCGAGTACAACAAGCCTTCATA
TGACGATCTCAAGATCCAAGCGCAGCTCGCAGCAATACTAATTAATCAGC
GCGAGCACGCTCACGCGCCAGGATGGTCAGCATCACCCCCCCACCCGCCT
ACGAGGGCCTGCCCACCTCCGTGCACGTCCACAGCAGTCCACATCGCCCT
TCACGAAAAAGCCTTTGGCAAGACTGGCGATGGATCCTCCTCATCGCAAT
ATCTTCCCTGGGCGCGATGATTGTTGTGCACCATGTAGGGGCGCGTGTTG
ACAAACACCTGGCAACGCGCCGGTTTACCGCTCGCTTGCAAGCCCAAGCA
CCGAGTGCCGAGGCGTACTGCCCCGAGTACACCCCCATCCTTCAACAAGC
CCTCGCTCCGTACGAAATTGTGGGTCGGACTGTGTCCAGTGTAGCAATGA
AAGAGGTGGATGACTTTGTCCGGGCTGGGGACGGAATGCGCATGCATATC
TCAGCTAAAAATGGCAAGGTCGCCACTACTCCCAAAGTCAATCGTGTAGA
TAAGTACCGCACAGGCAACCTGCTGGAGAATATTCAATTAGCCCAACAAC
TCTTTGGGAAGTTCCCGTTTGATTTTGAGTTCTGGTATAATGCGGGCGAC
TGTCCTGCGTTGCCTCGTGAGCTATTCCGTTCGAATGAAGGCGTCCTGCT
GCCGCCCTTGGGTTATGCAACTACCACGGGGCATTATGACGTTTCAATTC
CATATTCGACGCAGGCGATATGGAAGGAAGACGAGGACCTGTCGACGTTG
TCGGAGTTGGTGCACAAGCACCCGTGGGCTGGCAAGGCGAAGCGGGGTGT
GTGGAGGGGAAGTACGACCGGAGCAGTTCGAGTGGAGGAGTCGAATGTGT
GGGACTTACCCCGCGCGGTGTTGGTAAATGTATCCCTGCATAATCCCAAA
CTGCTCGATGCGCGTTTCACGGCGTGCAAGCATTGTGAGTCGCGTGTGTC
GTCTTTATTAGAAAAGGCTGGGTATGGATATGCCCCTTTCTTTACCTTTC
CCGAGCAGTTTAAGTACCAAGCGTTGATTGACGTGGACGGTAATTCGTGG
TCGAGCCGGTTTGCACAACTTCTGAGTATAAATTCTGTTGTTTTCAAACA
AGAGACCAAATATGTTGAGTTTTTCCGGCCCTTGGTGAAGCCGTACCGGC
ACTATATCCCCGTGAAAGGCGACTTGACAGATCTGGCTTCGAAGCTTGAT
AAAATGCTCGGGGAGGAAGGTAGAAAAAACACCACGGCCCAGCTGAAACT
CAGGGAAATCGGTGCGGAGAGCACGAGGTTATATATTCAGTCGCTGGTCC
CATCGAAGCAGTTGTGTTATTTACATCGAGTTTTGGATGCCTATAGTCGA
GTATATGCCCAGGCTGTGTTCAGTTGAAGAGGATTAGAGTGGAAGAAAAT
AGGTGAAGGGGGAATTGTCCACCAAATTAAATTCGCCTGCTTTGGATTTA
TCATCGTATGACATGGGACTGTGTGAAGAATGGGGAGGATATGCTGCTAA
ATTAGGAAAAGGGGCGAGGAAGGGAAAGAGAAGAATGGAAAGCATGCTTC
ATCCAAGAAACATTAGGCCGCGAGGGCTTGTGAATAGAAAGACACTCGTA
GGGAGATGAGCGCATCCACCTTTATTATGAAGAGTAGGTTGGCGTGCGCG
CTGCCCGCCATTTTGCAAGCACAAATACAAAGAGCCGAAACATACAACCA
TAAGATTAAAAAATAGCCTAGATCATTCATG

Coding sequence (CDS) from alignment at scaffold_5:308878..310658+

>mRNA_2424 ID=mRNA_2424|Name=jgi.p|Nanoce1779_2|580320|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at scaffold_5:308878..310658+ (Nannochloropsis oceanica)
ATGGTCAGCATCACCCCCCCACCCGCCTACGAGGGCCTGCCCACCTCCGT
GCACGTCCACAGCAGTCCACATCGCCCTTCACGAAAAAGCCTTTGGCAAG
ACTGGCGATGGATCCTCCTCATCGCAATATCTTCCCTGGGCGCGATGATT
GTTGTGCACCATGTAGGGGCGCGTGTTGACAAACACCTGGCAACGCGCCG
GTTTACCGCTCGCTTGCAAGCCCAAGCACCGAGTGCCGAGGCGTACTGCC
CCGAGTACACCCCCATCCTTCAACAAGCCCTCGCTCCGTACGAAATTGTG
GGTCGGACTGTGTCCAGTGTAGCAATGAAAGAGGTGGATGACTTTGTCCG
GGCTGGGGACGGAATGCGCATGCATATCTCAGCTAAAAATGGCAAGGTCG
CCACTACTCCCAAAGTCAATCGTGTAGATAAGTACCGCACAGGCAACCTG
CTGGAGAATATTCAATTAGCCCAACAACTCTTTGGGAAGTTCCCGTTTGA
TTTTGAGTTCTGGTATAATGCGGGCGACTGTCCTGCGTTGCCTCGTGAGC
TATTCCGTTCGAATGAAGGCGTCCTGCTGCCGCCCTTGGGTTATGCAACT
ACCACGGGGCATTATGACGTTTCAATTCCATATTCGACGCAGGCGATATG
GAAGGAAGACGAGGACCTGTCGACGTTGTCGGAGTTGGTGCACAAGCACC
CGTGGGCTGGCAAGGCGAAGCGGGGTGTGTGGAGGGGAAGTACGACCGGA
GCAGTTCGAGTGGAGGAGTCGAATGTGTGGGACTTACCCCGCGCGGTGTT
GGTAAATGTATCCCTGCATAATCCCAAACTGCTCGATGCGCGTTTCACGG
CGTGCAAGCATTGTGAGTCGCGTGTGTCGTCTTTATTAGAAAAGGCTGGG
TATGGATATGCCCCTTTCTTTACCTTTCCCGAGCAGTTTAAGTACCAAGC
GTTGATTGACGTGGACGGTAATTCGTGGTCGAGCCGGTTTGCACAACTTC
TGAGTATAAATTCTGTTGTTTTCAAACAAGAGACCAAATATGTTGAGTTT
TTCCGGCCCTTGGTGAAGCCGTACCGGCACTATATCCCCGTGAAAGGCGA
CTTGACAGATCTGGCTTCGAAGCTTGATAAAATGCTCGGGGAGGAAGGTA
GAAAAAACACCACGGCCCAGCTGAAACTCAGGGAAATCGGTGCGGAGAGC
ACGAGGTTATATATTCAGTCGCTGGTCCCATCGAAGCAGTTGTGTTATTT
ACATCGAGTTTTGGATGCCTATAGTCGAGTATATGCCCAGGCTGTGTTCA
GTTGA

Synonyms

Publications