jgi.p|Nanoce1779_2|552144, mRNA_2423 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|552144
Unique NamemRNA_2423
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1774
Alignment locationscaffold_5:306991..308845 -

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Properties
Property NameValue
TranscriptId552230
TrackFilteredModels2
ProteinId552144
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:306991..308845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552144gene_2423Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552144mRNA_2423-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2423CDS_2423Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2423 ID=mRNA_2423|Name=jgi.p|Nanoce1779_2|552144|organism=Nannochloropsis oceanica|type=mRNA|length=1774bp
GGACGTGTTCGTGTCAAATTCGTTTAGGCGTCCGTTGTGACGTTGTGGCC
GGCAATTCGAGCTCCGCCGACCAGCAGCAACCAACCTAGCCACGAAACAA
TTATGCCAGGGCTTTAGCACCTCACTCTGCAACTTTCGGTATTTGCCAAT
GTGTATGTAAGCCACCAGTTCAAGGCGTAAAGCGTTCAAAGAGCAGGTCT
GGGGCAATGAAGTGGAGGGCGTGTGGTAGGGCTCCGATCTCAGAGCGAAG
AAGTGCCTCGCTTGCCTCGATAGACCACACTACAAAATCCCACCAACACA
CGCGTCCCTCTCATACATGTACATGACCATCTCCACAGGTTGCTCTTTGA
CTTGAAGGACCTGATTTTCCAGGGAGGAAGAGGAGAGTAGCCAGGCATGT
ATGTCCCCCAAGACGGTATAGATATTGGTGCGGTGGTGGCAGAGATTGGG
GCGCATGCGGCCAAGCTGGGTTTTGCGGGCGAGGACCAACCCCGGGCCTA
CTTCCCCTCCCATACCGGGTACTTATCACCAGACGACTCCGCAATGGACA
CGGTCCCGCCCGCCAAAAACAACAAACACACTCCTCGTAAAGAGTACAAA
TTTGACTTAGGCCACAATGACGAGCGTCTGGAAGTCCACAATCCGTTGTC
GGGCGGTTTGATCAATGACTGGGACATGGTGGAGCAAATCTGGCAGCATG
CCAACAAGACTGCCCTCAGCGTAGACTTCGCCCATACTCCTCTTCTCCTT
ATCGAGCGCGCATTTGCTCCCCCCAAACTCCGCCATGAATACGTCGAGCT
CATGTTCGAGAAGTTTCAGTCTCCCGCACTATTCATGGCGAAGGACAGTG
TGCTAAGTTGTTTTGCGTGTGGGAAAACAACGGGGTTAGTGGTGGATATC
GGAGCCGAGACGTCGACCGTTGCCCCCGTTCAAGACGGATGGTTGGAGGC
GAAGGGCCTTGTGCGTTCTCGCCTGGGAGGTAGGATGGTGGATCGATATT
TGCTCAGCTTGCTAGAGAAGAATGGCGTTGTAGTCCAGCCCTTCCTGCGG
CAACCTCCCGCGGTGGGAGGCTCTCGAAAAGGAGGTGGAGGTGAAGGAAT
GAGTGCCAGCTTCCGCGAATACGCGACGTTGGAAGTAGTGCGGGGATTGA
AGGAGAGTGTGTGTCGGATGCCAGAGGTTGCATTCTCTCTTACCGACCCC
AAGTTCTCGGCTGCTCCGAAAGTAAATTACGAGCTACCTGATGGAGTAAT
GGTAGCAGCAGGCATAGAAAGGTTCCGAGCAGCAGAGATCTACATGTGCC
CGGAGCCCGCCTGGGAGTGCCTTCCAGGTGCCGAAGGGGAGGAGGGAGGG
GAGGAAGGAGGGAAGGAGGAAGATTGGAGTAGGGAGGCGTTGCCGAAGAT
GGTGGCGGACGCGGTATTGAAGTGTGAGAGAGACCAGCTGTCCCCCTTGC
TCAACAGTATAGTGCTTGCCGGAGGGGGAGCATGCGTGGAGGGAACGATG
GAGCGGTTGAAAAGTGAAGTGGAGACGGCAATATATGGGGAGGGGCAGGG
AGGGTATGGGCGTGTTAAGGTCATTCAGGCGGGGGCGCAGGAGAGAAAGA
TATGTGCATGGCTGGGAGGGTCGATAGTCGCTAGCTTGGGTAGCTTCCAC
GAGATGTGGGTTAGTAAGGCTGAGTATGCAGAGAGGGGGGCTGGGGTAAT
TGATGCCAAATGTCCATGAGTGGGGAGTAAAGGGAAAGTAGAGGAGAGGG
AAGGGGCAAAGAAAACGACGCGAG
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protein sequence of jgi.p|Nanoce1779_2|552144

>mRNA_2423-protein ID=mRNA_2423-protein|Name=jgi.p|Nanoce1779_2|552144|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MYVPQDGIDIGAVVAEIGAHAAKLGFAGEDQPRAYFPSHTGYLSPDDSAM
DTVPPAKNNKHTPRKEYKFDLGHNDERLEVHNPLSGGLINDWDMVEQIWQ
HANKTALSVDFAHTPLLLIERAFAPPKLRHEYVELMFEKFQSPALFMAKD
SVLSCFACGKTTGLVVDIGAETSTVAPVQDGWLEAKGLVRSRLGGRMVDR
YLLSLLEKNGVVVQPFLRQPPAVGGSRKGGGGEGMSASFREYATLEVVRG
LKESVCRMPEVAFSLTDPKFSAAPKVNYELPDGVMVAAGIERFRAAEIYM
CPEPAWECLPGAEGEEGGEEGGKEEDWSREALPKMVADAVLKCERDQLSP
LLNSIVLAGGGACVEGTMERLKSEVETAIYGEGQGGYGRVKVIQAGAQER
KICAWLGGSIVASLGSFHEMWVSKAEYAERGAGVIDAKCP*
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mRNA from alignment at scaffold_5:306991..308845-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2423 ID=mRNA_2423|Name=jgi.p|Nanoce1779_2|552144|organism=Nannochloropsis oceanica|type=mRNA|length=1855bp|location=Sequence derived from alignment at scaffold_5:306991..308845- (Nannochloropsis oceanica)
GGACGTGTTCGTGTCAAATTCGTTTAGGCGTCCGTTGTGACGTTGTGGCC
GGCAATTCGAGCTCCGCCGACCAGCAGCAACCAACCTAGCCACGAAACAA
TTATGCCAGGGCTTTAGCACCTCACTCTGCAACTTTCGGTATTTGCCAAT
GTGTATGTAAGCCACCAGTTCAAGGCGTAAAGCGTTCAAAGAGCAGGTCT
GGGGCAATGAAGTGGAGGGCGTGTGGTAGGGCTCCGATCTCAGAGCGAAG
AAGTGCCTCGCTTGCCTCGATAGACCACACTACAAAATCCCACCAACACA
CGCGTCCCTCTCATACATGTACATGACCATCTCCACAGGTTGCTCTTTGA
CTTGAAGGACCTGATTTTCCAGGGAGGAAGAGGAGAGTAGCCAGGCATGT
ATGTCCCCCAAGGTAAGCAGCCAGCCACGATGACAAAAGCAATGCGGAGG
CTAGCCGCTCATGACGATCAAACACACCGCTCTACCACATCAGACGGTAT
AGATATTGGTGCGGTGGTGGCAGAGATTGGGGCGCATGCGGCCAAGCTGG
GTTTTGCGGGCGAGGACCAACCCCGGGCCTACTTCCCCTCCCATACCGGG
TACTTATCACCAGACGACTCCGCAATGGACACGGTCCCGCCCGCCAAAAA
CAACAAACACACTCCTCGTAAAGAGTACAAATTTGACTTAGGCCACAATG
ACGAGCGTCTGGAAGTCCACAATCCGTTGTCGGGCGGTTTGATCAATGAC
TGGGACATGGTGGAGCAAATCTGGCAGCATGCCAACAAGACTGCCCTCAG
CGTAGACTTCGCCCATACTCCTCTTCTCCTTATCGAGCGCGCATTTGCTC
CCCCCAAACTCCGCCATGAATACGTCGAGCTCATGTTCGAGAAGTTTCAG
TCTCCCGCACTATTCATGGCGAAGGACAGTGTGCTAAGTTGTTTTGCGTG
TGGGAAAACAACGGGGTTAGTGGTGGATATCGGAGCCGAGACGTCGACCG
TTGCCCCCGTTCAAGACGGATGGTTGGAGGCGAAGGGCCTTGTGCGTTCT
CGCCTGGGAGGTAGGATGGTGGATCGATATTTGCTCAGCTTGCTAGAGAA
GAATGGCGTTGTAGTCCAGCCCTTCCTGCGGCAACCTCCCGCGGTGGGAG
GCTCTCGAAAAGGAGGTGGAGGTGAAGGAATGAGTGCCAGCTTCCGCGAA
TACGCGACGTTGGAAGTAGTGCGGGGATTGAAGGAGAGTGTGTGTCGGAT
GCCAGAGGTTGCATTCTCTCTTACCGACCCCAAGTTCTCGGCTGCTCCGA
AAGTAAATTACGAGCTACCTGATGGAGTAATGGTAGCAGCAGGCATAGAA
AGGTTCCGAGCAGCAGAGATCTACATGTGCCCGGAGCCCGCCTGGGAGTG
CCTTCCAGGTGCCGAAGGGGAGGAGGGAGGGGAGGAAGGAGGGAAGGAGG
AAGATTGGAGTAGGGAGGCGTTGCCGAAGATGGTGGCGGACGCGGTATTG
AAGTGTGAGAGAGACCAGCTGTCCCCCTTGCTCAACAGTATAGTGCTTGC
CGGAGGGGGAGCATGCGTGGAGGGAACGATGGAGCGGTTGAAAAGTGAAG
TGGAGACGGCAATATATGGGGAGGGGCAGGGAGGGTATGGGCGTGTTAAG
GTCATTCAGGCGGGGGCGCAGGAGAGAAAGATATGTGCATGGCTGGGAGG
GTCGATAGTCGCTAGCTTGGGTAGCTTCCACGAGATGTGGGTTAGTAAGG
CTGAGTATGCAGAGAGGGGGGCTGGGGTAATTGATGCCAAATGTCCATGA
GTGGGGAGTAAAGGGAAAGTAGAGGAGAGGGAAGGGGCAAAGAAAACGAC
GCGAG
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Coding sequence (CDS) from alignment at scaffold_5:306991..308845-

>mRNA_2423 ID=mRNA_2423|Name=jgi.p|Nanoce1779_2|552144|organism=Nannochloropsis oceanica|type=CDS|length=2646bp|location=Sequence derived from alignment at scaffold_5:306991..308845- (Nannochloropsis oceanica)
ACGGTATAGATATTGGTGCGGTGGTGGCAGAGATTGGGGCGCATGCGGCC
AAGCTGGGTTTTGCGGGCGAGGACCAACCCCGGGCCTACTTCCCCTCCCA
TACCGGGTACTTATCACCAGACGACTCCGCAATGGACACGGTCCCGCCCG
CCAAAAACAACAAACACACTCCTCGTAAAGAGTACAAATTTGACTTAGGC
CACAATGACGAGCGTCTGGAAGTCCACAATCCGTTGTCGGGCGGTTTGAT
CAATGACTGGGACATGGTGGAGCAAATCTGGCAGCATGCCAACAAGACTG
CCCTCAGCGTAGACTTCGCCCATACTCCTCTTCTCCTTATCGAGCGCGCA
TTTGCTCCCCCCAAACTCCGCCATGAATACGTCGAGCTCATGTTCGAGAA
GTTTCAGTCTCCCGCACTATTCATGGCGAAGGACAGTGTGCTAAGTTGTT
TTGCGTGTGGGAAAACAACGGGGTTAGTGGTGGATATCGGAGCCGAGACG
TCGACCGTTGCCCCCGTTCAAGACGGATGGTTGGAGGCGAAGGGCCTTGT
GCGTTCTCGCCTGGGAGGTAGGATGGTGGATCGATATTTGCTCAGCTTGC
TAGAGAAGAATGGCGTTGTAGTCCAGCCCTTCCTGCGGCAACCTCCCGCG
GTGGGAGGCTCTCGAAAAGGAGGTGGAGGTGAAGGAATGAGTGCCAGCTT
CCGCGAATACGCGACGTTGGAAGTAGTGCGGGGATTGAAGGAGAGTGTGT
GTCGGATGCCAGAGGTTGCATTCTCTCTTACCGACCCCAAGTTCTCGGCT
GCTCCGAAAGTAAATTACGAGCTACCTGATGGAGTAATGGTAGCAGCAGG
CATAGAAAGGTTCCGAGCAGCAGAGATCTACATGTGCCCGGAGCCCGCCT
GGGAGTGCCTTCCAGGTGCCGAAGGGGAGGAGGGAGGGGAGGAAGGAGGG
AAGGAGGAAGATTGGAGTAGGGAGGCGTTGCCGAAGATGGTGGCGGACGC
GGTATTGAAGTGTGAGAGAGACCAGCTGTCCCCCTTGCTCAACAGTATAG
TGCTTGCCGGAGGGGGAGCATGCGTGGAGGGAACGATGGAGCGGTTGAAA
AGTGAAGTGGAGACGGCAATATATGGGGAGGGGCAGGGAGGGTATGGGCG
TGTTAAGGTCATTCAGGCGGGGGCGCAGGAGAGAAAGATATGTGCATGGC
TGGGAGGGTCGATAGTCGCTAGCTTGGGTAGCTTCCACGAGATGTGGGTT
AGTAAGGCTGAGTATGCAGAGAGGGGGGCTGGGGTAATTGATGCCAAATG
TCCATGAATGTATGTCCCCCAAGACGGTATAGATATTGGTGCGGTGGTGG
CAGAGATTGGGGCGCATGCGGCCAAGCTGGGTTTTGCGGGCGAGGACCAA
CCCCGGGCCTACTTCCCCTCCCATACCGGGTACTTATCACCAGACGACTC
CGCAATGGACACGGTCCCGCCCGCCAAAAACAACAAACACACTCCTCGTA
AAGAGTACAAATTTGACTTAGGCCACAATGACGAGCGTCTGGAAGTCCAC
AATCCGTTGTCGGGCGGTTTGATCAATGACTGGGACATGGTGGAGCAAAT
CTGGCAGCATGCCAACAAGACTGCCCTCAGCGTAGACTTCGCCCATACTC
CTCTTCTCCTTATCGAGCGCGCATTTGCTCCCCCCAAACTCCGCCATGAA
TACGTCGAGCTCATGTTCGAGAAGTTTCAGTCTCCCGCACTATTCATGGC
GAAGGACAGTGTGCTAAGTTGTTTTGCGTGTGGGAAAACAACGGGGTTAG
TGGTGGATATCGGAGCCGAGACGTCGACCGTTGCCCCCGTTCAAGACGGA
TGGTTGGAGGCGAAGGGCCTTGTGCGTTCTCGCCTGGGAGGTAGGATGGT
GGATCGATATTTGCTCAGCTTGCTAGAGAAGAATGGCGTTGTAGTCCAGC
CCTTCCTGCGGCAACCTCCCGCGGTGGGAGGCTCTCGAAAAGGAGGTGGA
GGTGAAGGAATGAGTGCCAGCTTCCGCGAATACGCGACGTTGGAAGTAGT
GCGGGGATTGAAGGAGAGTGTGTGTCGGATGCCAGAGGTTGCATTCTCTC
TTACCGACCCCAAGTTCTCGGCTGCTCCGAAAGTAAATTACGAGCTACCT
GATGGAGTAATGGTAGCAGCAGGCATAGAAAGGTTCCGAGCAGCAGAGAT
CTACATGTGCCCGGAGCCCGCCTGGGAGTGCCTTCCAGGTGCCGAAGGGG
AGGAGGGAGGGGAGGAAGGAGGGAAGGAGGAAGATTGGAGTAGGGAGGCG
TTGCCGAAGATGGTGGCGGACGCGGTATTGAAGTGTGAGAGAGACCAGCT
GTCCCCCTTGCTCAACAGTATAGTGCTTGCCGGAGGGGGAGCATGCGTGG
AGGGAACGATGGAGCGGTTGAAAAGTGAAGTGGAGACGGCAATATATGGG
GAGGGGCAGGGAGGGTATGGGCGTGTTAAGGTCATTCAGGCGGGGGCGCA
GGAGAGAAAGATATGTGCATGGCTGGGAGGGTCGATAGTCGCTAGCTTGG
GTAGCTTCCACGAGATGTGGGTTAGTAAGGCTGAGTATGCAGAGAGGGGG
GCTGGGGTAATTGATGCCAAATGTCCATGAATGTATGTCCCCCAAG
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Synonyms
Publications