jgi.p|Nanoce1779_2|628474, mRNA_2422 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|628474
Unique Name	mRNA_2422
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2246
Alignment location	scaffold_5:304716..306961 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	628560
Track	FilteredModels2
ProteinId	628474

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:304716..306961 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628474	gene_2422	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628474	mRNA_2422-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2422	CDS_2422	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:304716..306961+
coding sequence from alignment at scaffold_5:304716..306961+

mRNA sequence

>mRNA_2422 ID=mRNA_2422|Name=jgi.p|Nanoce1779_2|628474|organism=Nannochloropsis oceanica|type=mRNA|length=2246bp
AGTCATGATGTGGTGGTGGAATAGTGGTGACCGCGCTATTTGTAGATCAT
GGTGTCGAGGCAAGCCATCACCGTGATAGAGACTCCCCCCGGCTACAGTG
AGCCTTTCCAATCGCCCAAAAACTCGAAACGCTGTGGTCGTCCTCTTTCT
GACCCCGCACACCTCAACCCAACCCACCTACAGGGAACAGAAAAAGGGGG
ATCGCCCGGTTCTCATGGAGGAAGAGTCAGCGGCCTCTTTCTTTCACACG
TCCGAAGATGACCCGTCCTCTTCCTCCATCTGCTCTTCCGCATCCTCCTC
GTCCTGCCCATCCTCCTCCAGCGGCGCGTACGAATGGGGCACCTGGCCAT
GGATCTGTGAACATGTACATCTCGTCCTTGCCTTTTCCGAGACGGCGTTT
TTACTGCTTAAAGAAGCCTTGGGCTTGTCGTGGGTTGCCATTTGTGCTTG
GTCCCGCCTCGGCATTGTTCTAAGTCGCCCTGTCCTCCGCCTCCTCTTCT
ACTTGTGGTCGTTGGCTTTGCCATATATGCAGTGGTTCGCCCGCACGTTT
TTCAATCACTTGAAGGAGCAAGAGCCGGAAGTGTTGATTGGGTACGCATG
CTTTTTGGGTGCGCTTATTGGTTTCCTCCTCATCAGGCGGTTGCTTCGGC
GGCTGCGTGTCTGGGACCGATGCCGCGCATTTGTCACTCGGAAAGTCGTT
ATGGTTGAATATCGATACCACCAAGCACGCAATAAGCTCCATGCGTACTC
CCAACGGGCAGCCGAGGCATTGCCGCACGTCTTGTTCGCTTTGGGGAGCG
TGGGTGCCGTGTGGTTGTTCCCAAAAGCAACCCATATGCTATCCCAAGAG
CTGGTCTTTCACATCTTGTTGTTGTATTTGCCCGCACTAGCAACCTTCTA
TGCCGTCGAGTGCTCCCCTTTCCCGCCCTCGCCGCCATCTACTGCTACTG
CTACTTCTCTAAGAAGCAAGCAAGGCAAGCCACCCTCCTACCCCTCCTCT
TCTACCCCCGCCACTACCCCCCCCTGGCAAGAGCAAACCAAGCACACCAA
GCGCCTCAACGAATGGCTCTCCTACTGGATCATGACCTCCTTAGTACTGA
CGTTTGGTAACCTCCTCGAACAATTGTACCTGCGGTGGTTCACCAGACTC
CTCCCCTTCAGTAACGAAGCTTTCCTTTTCTTCCTCCTCTGGCTCCATCT
TCCTCAAGGTGGCCATGCTCTGCTCAAACAGCACCTCCTTCCCTTCCTCC
GCCGGCACCTTGGAGGCATCCTATACTTCCAGAAGAAACGGGACTCATTT
ATGAAGCACGTGCTAAGTGTCGCTGTCTTCACTCGTCTCCTGAGCACAGC
CACTGCTGACCTTCTCGCTCTTCATGTCGATGAGATGTTTCTCGTTCTCC
CTGCTGCGGTTCTGTCTCTCTCTCCCTTGGCAGGTTGGGGACTGCTATTC
ATTTCTTTGATTTTTCCAGGTTTTGCTTCGATTCGTGCACTGGGAAGCAG
TGGTGGTAATGGTATTAGTAAAGGAGGAGTGCATTACAGCCCCATCCCTT
GGTTGAAGTATTGGGTGGTGTACGCGGTTTCTCACATCTTGTTTCAGCTT
ATGCCGTTTTGGTCGGTCATTCAAATGTGGTTTTATCTCTGGATATTGCT
CCCGTTCGAATTGGAAGGCGTGCCTGTACTGCATAAATTAAAATTCGATG
GACGGAGGAGGATCTGGGGTGTCTTACGCAGTGTGTACCGGCAGGAGGTG
ATGATTATCGGAGGAGCAGGAGCAGGAGCAGGAAAAGTAGCAGCAGCGGG
GAAAATGGCAGGGGCACGGGGAGAAGCAGGAGGAGGGGAGTCAAGAGAAG
GTCCACAGCAAGAGATGCAGCAGCCGGAAGGAGGAGACGAAGAAAAGTCG
ATTCATCCCCCCGTGTCCTCCACTTCCTCGTCCTTCGCTTCAGAAAAGAG
CAACACAGAATTGAAGCGGCGATCGGGAGGGGGAAGGAAAGAAATGGGTG
TGTTACGGAGGGAGGAGGAAGAAATGGAGGGAGAAGAGGGGGAGGGGGAA
GTCAAAGGAGAGGTCTTGGGAGGTGGGGGAGGAAGATGAGGAAGAAAGAT
GGCTTGAGCGTGTGGAACGCGTGACTGTAATTGTGCGTCAGGAGCATCTC
GTATATATATATACATATAAGATCAAGAACAAGGATAGAAGAGAGCAAAA
CTGATCATAGAATTTCCATCAAAGCAGCAAACAGACGCCAAAGCAC

protein sequence of jgi.p|Nanoce1779_2|628474

>mRNA_2422-protein ID=mRNA_2422-protein|Name=jgi.p|Nanoce1779_2|628474|organism=Nannochloropsis oceanica|type=polypeptide|length=625bp
MEEESAASFFHTSEDDPSSSSICSSASSSSCPSSSSGAYEWGTWPWICEH
VHLVLAFSETAFLLLKEALGLSWVAICAWSRLGIVLSRPVLRLLFYLWSL
ALPYMQWFARTFFNHLKEQEPEVLIGYACFLGALIGFLLIRRLLRRLRVW
DRCRAFVTRKVVMVEYRYHQARNKLHAYSQRAAEALPHVLFALGSVGAVW
LFPKATHMLSQELVFHILLLYLPALATFYAVECSPFPPSPPSTATATSLR
SKQGKPPSYPSSSTPATTPPWQEQTKHTKRLNEWLSYWIMTSLVLTFGNL
LEQLYLRWFTRLLPFSNEAFLFFLLWLHLPQGGHALLKQHLLPFLRRHLG
GILYFQKKRDSFMKHVLSVAVFTRLLSTATADLLALHVDEMFLVLPAAVL
SLSPLAGWGLLFISLIFPGFASIRALGSSGGNGISKGGVHYSPIPWLKYW
VVYAVSHILFQLMPFWSVIQMWFYLWILLPFELEGVPVLHKLKFDGRRRI
WGVLRSVYRQEVMIIGGAGAGAGKVAAAGKMAGARGEAGGGESREGPQQE
MQQPEGGDEEKSIHPPVSSTSSSFASEKSNTELKRRSGGGRKEMGVLRRE
EEEMEGEEGEGEVKGEVLGGGGGR*

mRNA from alignment at scaffold_5:304716..306961+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2422 ID=mRNA_2422|Name=jgi.p|Nanoce1779_2|628474|organism=Nannochloropsis oceanica|type=mRNA|length=2246bp|location=Sequence derived from alignment at scaffold_5:304716..306961+ (Nannochloropsis oceanica)
AGTCATGATGTGGTGGTGGAATAGTGGTGACCGCGCTATTTGTAGATCAT
GGTGTCGAGGCAAGCCATCACCGTGATAGAGACTCCCCCCGGCTACAGTG
AGCCTTTCCAATCGCCCAAAAACTCGAAACGCTGTGGTCGTCCTCTTTCT
GACCCCGCACACCTCAACCCAACCCACCTACAGGGAACAGAAAAAGGGGG
ATCGCCCGGTTCTCATGGAGGAAGAGTCAGCGGCCTCTTTCTTTCACACG
TCCGAAGATGACCCGTCCTCTTCCTCCATCTGCTCTTCCGCATCCTCCTC
GTCCTGCCCATCCTCCTCCAGCGGCGCGTACGAATGGGGCACCTGGCCAT
GGATCTGTGAACATGTACATCTCGTCCTTGCCTTTTCCGAGACGGCGTTT
TTACTGCTTAAAGAAGCCTTGGGCTTGTCGTGGGTTGCCATTTGTGCTTG
GTCCCGCCTCGGCATTGTTCTAAGTCGCCCTGTCCTCCGCCTCCTCTTCT
ACTTGTGGTCGTTGGCTTTGCCATATATGCAGTGGTTCGCCCGCACGTTT
TTCAATCACTTGAAGGAGCAAGAGCCGGAAGTGTTGATTGGGTACGCATG
CTTTTTGGGTGCGCTTATTGGTTTCCTCCTCATCAGGCGGTTGCTTCGGC
GGCTGCGTGTCTGGGACCGATGCCGCGCATTTGTCACTCGGAAAGTCGTT
ATGGTTGAATATCGATACCACCAAGCACGCAATAAGCTCCATGCGTACTC
CCAACGGGCAGCCGAGGCATTGCCGCACGTCTTGTTCGCTTTGGGGAGCG
TGGGTGCCGTGTGGTTGTTCCCAAAAGCAACCCATATGCTATCCCAAGAG
CTGGTCTTTCACATCTTGTTGTTGTATTTGCCCGCACTAGCAACCTTCTA
TGCCGTCGAGTGCTCCCCTTTCCCGCCCTCGCCGCCATCTACTGCTACTG
CTACTTCTCTAAGAAGCAAGCAAGGCAAGCCACCCTCCTACCCCTCCTCT
TCTACCCCCGCCACTACCCCCCCCTGGCAAGAGCAAACCAAGCACACCAA
GCGCCTCAACGAATGGCTCTCCTACTGGATCATGACCTCCTTAGTACTGA
CGTTTGGTAACCTCCTCGAACAATTGTACCTGCGGTGGTTCACCAGACTC
CTCCCCTTCAGTAACGAAGCTTTCCTTTTCTTCCTCCTCTGGCTCCATCT
TCCTCAAGGTGGCCATGCTCTGCTCAAACAGCACCTCCTTCCCTTCCTCC
GCCGGCACCTTGGAGGCATCCTATACTTCCAGAAGAAACGGGACTCATTT
ATGAAGCACGTGCTAAGTGTCGCTGTCTTCACTCGTCTCCTGAGCACAGC
CACTGCTGACCTTCTCGCTCTTCATGTCGATGAGATGTTTCTCGTTCTCC
CTGCTGCGGTTCTGTCTCTCTCTCCCTTGGCAGGTTGGGGACTGCTATTC
ATTTCTTTGATTTTTCCAGGTTTTGCTTCGATTCGTGCACTGGGAAGCAG
TGGTGGTAATGGTATTAGTAAAGGAGGAGTGCATTACAGCCCCATCCCTT
GGTTGAAGTATTGGGTGGTGTACGCGGTTTCTCACATCTTGTTTCAGCTT
ATGCCGTTTTGGTCGGTCATTCAAATGTGGTTTTATCTCTGGATATTGCT
CCCGTTCGAATTGGAAGGCGTGCCTGTACTGCATAAATTAAAATTCGATG
GACGGAGGAGGATCTGGGGTGTCTTACGCAGTGTGTACCGGCAGGAGGTG
ATGATTATCGGAGGAGCAGGAGCAGGAGCAGGAAAAGTAGCAGCAGCGGG
GAAAATGGCAGGGGCACGGGGAGAAGCAGGAGGAGGGGAGTCAAGAGAAG
GTCCACAGCAAGAGATGCAGCAGCCGGAAGGAGGAGACGAAGAAAAGTCG
ATTCATCCCCCCGTGTCCTCCACTTCCTCGTCCTTCGCTTCAGAAAAGAG
CAACACAGAATTGAAGCGGCGATCGGGAGGGGGAAGGAAAGAAATGGGTG
TGTTACGGAGGGAGGAGGAAGAAATGGAGGGAGAAGAGGGGGAGGGGGAA
GTCAAAGGAGAGGTCTTGGGAGGTGGGGGAGGAAGATGAGGAAGAAAGAT
GGCTTGAGCGTGTGGAACGCGTGACTGTAATTGTGCGTCAGGAGCATCTC
GTATATATATATACATATAAGATCAAGAACAAGGATAGAAGAGAGCAAAA
CTGATCATAGAATTTCCATCAAAGCAGCAAACAGACGCCAAAGCAC

Coding sequence (CDS) from alignment at scaffold_5:304716..306961+

>mRNA_2422 ID=mRNA_2422|Name=jgi.p|Nanoce1779_2|628474|organism=Nannochloropsis oceanica|type=CDS|length=1875bp|location=Sequence derived from alignment at scaffold_5:304716..306961+ (Nannochloropsis oceanica)
ATGGAGGAAGAGTCAGCGGCCTCTTTCTTTCACACGTCCGAAGATGACCC
GTCCTCTTCCTCCATCTGCTCTTCCGCATCCTCCTCGTCCTGCCCATCCT
CCTCCAGCGGCGCGTACGAATGGGGCACCTGGCCATGGATCTGTGAACAT
GTACATCTCGTCCTTGCCTTTTCCGAGACGGCGTTTTTACTGCTTAAAGA
AGCCTTGGGCTTGTCGTGGGTTGCCATTTGTGCTTGGTCCCGCCTCGGCA
TTGTTCTAAGTCGCCCTGTCCTCCGCCTCCTCTTCTACTTGTGGTCGTTG
GCTTTGCCATATATGCAGTGGTTCGCCCGCACGTTTTTCAATCACTTGAA
GGAGCAAGAGCCGGAAGTGTTGATTGGGTACGCATGCTTTTTGGGTGCGC
TTATTGGTTTCCTCCTCATCAGGCGGTTGCTTCGGCGGCTGCGTGTCTGG
GACCGATGCCGCGCATTTGTCACTCGGAAAGTCGTTATGGTTGAATATCG
ATACCACCAAGCACGCAATAAGCTCCATGCGTACTCCCAACGGGCAGCCG
AGGCATTGCCGCACGTCTTGTTCGCTTTGGGGAGCGTGGGTGCCGTGTGG
TTGTTCCCAAAAGCAACCCATATGCTATCCCAAGAGCTGGTCTTTCACAT
CTTGTTGTTGTATTTGCCCGCACTAGCAACCTTCTATGCCGTCGAGTGCT
CCCCTTTCCCGCCCTCGCCGCCATCTACTGCTACTGCTACTTCTCTAAGA
AGCAAGCAAGGCAAGCCACCCTCCTACCCCTCCTCTTCTACCCCCGCCAC
TACCCCCCCCTGGCAAGAGCAAACCAAGCACACCAAGCGCCTCAACGAAT
GGCTCTCCTACTGGATCATGACCTCCTTAGTACTGACGTTTGGTAACCTC
CTCGAACAATTGTACCTGCGGTGGTTCACCAGACTCCTCCCCTTCAGTAA
CGAAGCTTTCCTTTTCTTCCTCCTCTGGCTCCATCTTCCTCAAGGTGGCC
ATGCTCTGCTCAAACAGCACCTCCTTCCCTTCCTCCGCCGGCACCTTGGA
GGCATCCTATACTTCCAGAAGAAACGGGACTCATTTATGAAGCACGTGCT
AAGTGTCGCTGTCTTCACTCGTCTCCTGAGCACAGCCACTGCTGACCTTC
TCGCTCTTCATGTCGATGAGATGTTTCTCGTTCTCCCTGCTGCGGTTCTG
TCTCTCTCTCCCTTGGCAGGTTGGGGACTGCTATTCATTTCTTTGATTTT
TCCAGGTTTTGCTTCGATTCGTGCACTGGGAAGCAGTGGTGGTAATGGTA
TTAGTAAAGGAGGAGTGCATTACAGCCCCATCCCTTGGTTGAAGTATTGG
GTGGTGTACGCGGTTTCTCACATCTTGTTTCAGCTTATGCCGTTTTGGTC
GGTCATTCAAATGTGGTTTTATCTCTGGATATTGCTCCCGTTCGAATTGG
AAGGCGTGCCTGTACTGCATAAATTAAAATTCGATGGACGGAGGAGGATC
TGGGGTGTCTTACGCAGTGTGTACCGGCAGGAGGTGATGATTATCGGAGG
AGCAGGAGCAGGAGCAGGAAAAGTAGCAGCAGCGGGGAAAATGGCAGGGG
CACGGGGAGAAGCAGGAGGAGGGGAGTCAAGAGAAGGTCCACAGCAAGAG
ATGCAGCAGCCGGAAGGAGGAGACGAAGAAAAGTCGATTCATCCCCCCGT
GTCCTCCACTTCCTCGTCCTTCGCTTCAGAAAAGAGCAACACAGAATTGA
AGCGGCGATCGGGAGGGGGAAGGAAAGAAATGGGTGTGTTACGGAGGGAG
GAGGAAGAAATGGAGGGAGAAGAGGGGGAGGGGGAAGTCAAAGGAGAGGT
CTTGGGAGGTGGGGGAGGAAGATGA

Synonyms

Publications