Properties
| Property Name | Value |
|---|
| TranscriptId | 580396 |
| Track | FilteredModels2 |
| ProteinId | 580310 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:303077..304563 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2421 ID=mRNA_2421|Name=jgi.p|Nanoce1779_2|580310|organism=Nannochloropsis oceanica|type=mRNA|length=626bp
ACAGCAGAGCCATGCCCTATCGCAAGCTGGGACGGACGTCGTCCCATCGG
TGGGCAATGCTCCGGAATATGGTCACATCCTTGGTGGAACACGAGCGCAT
TCGCACCACCACAGCCAAGGCCAAGGAGCTCCGGCGGGTAGCGGACCGAA
TGGTTACCTGGGCAAAGGACGGTTCCCTGCACGCACGTCGACAAGCCGCC
ATGGTCATCCGCACCCGCGAGCACCTCAAAAAACTATTTGACGTTCTGGG
CCCTCGATATCTCACACGAGCAGGCGGGTACACGCGTATTTTGAAGCTTC
AGAGGTGGCGACCTGGGGATGCTGCCGACATGAGCTTGATTGAGTTTGTT
GCTCGGCCAGGAGAGTTAAGGCCGGCGCGGCCGCCACAACGACTACCAGC
AGGGGAAACAAGAATGGCGTCGTCGTTGCAGGCGATGGCGGCTAATTCGA
GCAAGGTTAAGGTCTCTCTTCCTACCTCGTCCTCACCGTAAGTTCAAGGG
TAGAGAGGCGGGGAGAAGCGAGTAACGAGATTACAACAGCAACTTATGTA
CACAAGGATTTAAGAAGTGGTTGGAGGCGAGGAAGATGAGGACGAGAGAA
AAGAATAAAAAGAGAAGTGGAAAGGG back to topprotein sequence of jgi.p|Nanoce1779_2|580310 >mRNA_2421-protein ID=mRNA_2421-protein|Name=jgi.p|Nanoce1779_2|580310|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MPYRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTW
AKDGSLHARRQAAMVIRTREHLKKLFDVLGPRYLTRAGGYTRILKLQRWR
PGDAADMSLIEFVARPGELRPARPPQRLPAGETRMASSLQAMAANSSKVK
VSLPTSSSP* back to topmRNA from alignment at scaffold_5:303077..304563- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2421 ID=mRNA_2421|Name=jgi.p|Nanoce1779_2|580310|organism=Nannochloropsis oceanica|type=mRNA|length=1487bp|location=Sequence derived from alignment at scaffold_5:303077..304563- (Nannochloropsis oceanica)
ACAGCAGAGCCATGCCCTATCGCAAGCTGGGACGGACGTCGTCCCATCGG
TGGGCAATGCTCCGGAATATGGTCACATCCTTGGTGGAACACGAGCGCAT
TCGCACCACCACAGCCAAGGTCAGTCAATGAGGGAGGATTGGAGGGAGGG
AGGAGGCAGAGTATGGGAATTTGTGCGTGTATTTGGCGGACACAAGCCCG
TAAATGGCCTGCAGACCGGGCGACAAGGAAGAGGAGAAGAAAGGCATGAC
TGTCCATGGGTGTATGTCTGATTCACCGATAAGAGTGGGCCTTACCACCG
CTCGCTTCCTCGAGATTCACAAGGCGTTCGGGGTGATGGTACATGCATTT
TGGGACCGAGAGAATCCTTTCTGCACGAGTAATAATCGAATCAAGTACTT
GTTTGAATGTATTATCTCTGAGGTTCTATTTTGAAAAGGCGCTCTCCGAA
TGGGTACCGCAGTGAATGCTCATTTCCATCGGAACAGTCTCTGTAATGCA
TGGGTGCCCATCACCCCCTTGAACTAAAGCATTTGCGAGTAGAGTGCGTT
GGGAATGGTACTTCTGGTTAGGATATGTTCAAATCATGCACTCCTCGGAG
TGAAAGTGTGGCGATTGAGACCTCCATGATGTCAGCATAAAGGCATGCAG
GTCCGGCACCTCCTCTTTCTCAGTCGATTTGCTCTCATGAATCATAAGGA
TTGGGAGGGCATACACTTCTTTCAACCCCAGAGGTGATATACAAAATGTA
AAAATGTAAACTTGATACGATATACATGTCTTGTACATGAACATGATGAA
TACGCGCACACACACACAAATCTAAACCTACCTACCTTCTCCATACACAC
AACACACAGGCCAAGGAGCTCCGGCGGGTAGCGGACCGAATGGTTACCTG
GGCAAAGGTAAGCAACTTTAAAGCAACAGCACCCACCCAAGCGACCCTCT
CTCCCTCCACGACTACTTCCAATTCTCTCCATCTCAACTTTTTCGAATTA
AACCCTTCCCCCCCTACTCCGACCACAGGACGGTTCCCTGCACGCACGTC
GACAAGCCGCCATGGTCATCCGCACCCGCGAGCACCTCAAAAAACTATTT
GACGTTCTGGGCCCTCGATATCTCACACGAGCAGGCGGGTACACGCGTAT
TTTGAAGCTTCAGAGGTGGCGACCTGGGGATGCTGCCGACATGAGCTTGA
TTGAGTTTGTTGCTCGGCCAGGAGAGTTAAGGCCGGCGCGGCCGCCACAA
CGACTACCAGCAGGGGAAACAAGAATGGCGTCGTCGTTGCAGGCGATGGC
GGCTAATTCGAGCAAGGTTAAGGTCTCTCTTCCTACCTCGTCCTCACCGT
AAGTTCAAGGGTAGAGAGGCGGGGAGAAGCGAGTAACGAGATTACAACAG
CAACTTATGTACACAAGGATTTAAGAAGTGGTTGGAGGCGAGGAAGATGA
GGACGAGAGAAAAGAATAAAAAGAGAAGTGGAAAGGG back to topCoding sequence (CDS) from alignment at scaffold_5:303077..304563- >mRNA_2421 ID=mRNA_2421|Name=jgi.p|Nanoce1779_2|580310|organism=Nannochloropsis oceanica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_5:303077..304563- (Nannochloropsis oceanica)
GACGGTTCCCTGCACGCACGTCGACAAGCCGCCATGGTCATCCGCACCCG
CGAGCACCTCAAAAAACTATTTGACGTTCTGGGCCCTCGATATCTCACAC
GAGCAGGCGGGTACACGCGTATTTTGAAGCTTCAGAGGTGGCGACCTGGG
GATGCTGCCGACATGAGCTTGATTGAGTTTGTTGCTCGGCCAGGAGAGTT
AAGGCCGGCGCGGCCGCCACAACGACTACCAGCAGGGGAAACAAGAATGG
CGTCGTCGTTGCAGGCGATGGCGGCTAATTCGAGCAAGGTTAAGGTCTCT
CTTCCTACCTCGTCCTCACCGTAAGCCAAGGAGCTCCGGCGGGTAGCGGA
CCGAATGGTTACCTGGGCAAAGATGCCCTATCGCAAGCTGGGACGGACGT
CGTCCCATCGGTGGGCAATGCTCCGGAATATGGTCACATCCTTGGTGGAA
CACGAGCGCATTCGCACCACCACAGCCAAGGACGGTTCCCTGCACGCACG
TCGACAAGCCGCCATGGTCATCCGCACCCGCGAGCACCTCAAAAAACTAT
TTGACGTTCTGGGCCCTCGATATCTCACACGAGCAGGCGGGTACACGCGT
ATTTTGAAGCTTCAGAGGTGGCGACCTGGGGATGCTGCCGACATGAGCTT
GATTGAGTTTGTTGCTCGGCCAGGAGAGTTAAGGCCGGCGCGGCCGCCAC
AACGACTACCAGCAGGGGAAACAAGAATGGCGTCGTCGTTGCAGGCGATG
GCGGCTAATTCGAGCAAGGTTAAGGTCTCTCTTCCTACCTCGTCCTCACC
GTAAGCCAAGGAGCTCCGGCGGGTAGCGGACCGAATGGTTACCTGGGCAA
AGATGCCCTATCGCAAGCTGGGACGGACGTCGTCCCATCGGTGGGCAATG
CTCCGGAATATGGTCACATCCTTGGTGGAACACGAGCGCATTCGCACCAC
CACAGCCAAGGACGGTTCCCTGCACGCACGTCGACAAGCCGCCATGGTCA
TCCGCACCCGCGAGCACCTCAAAAAACTATTTGACGTTCTGGGCCCTCGA
TATCTCACACGAGCAGGCGGGTACACGCGTATTTTGAAGCTTCAGAGGTG
GCGACCTGGGGATGCTGCCGACATGAGCTTGATTGAGTTTGTTGCTCGGC
CAGGAGAGTTAAGGCCGGCGCGGCCGCCACAACGACTACCAGCAGGGGAA
ACAAGAATGGCGTCGTCGTTGCAGGCGATGGCGGCTAATTCGAGCAAGGT
TAAGGTCTCTCTTCCTACCTCGTCCTCACCGTAAGCCAAGGAGCTCCGGC
GGGTAGCGGACCGAATGGTTACCTGGGCAAAGATGCCCTATCGCAAGCTG
GGACGGACGTCGTCCCATCGGTGGGCAATGCTCCGGAATATGGTCACATC
CTTGGTGGAACACGAGCGCATTCGCACCACCACAGCCAAG back to top
|