jgi.p|Nanoce1779_2|580306, mRNA_2419 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580306
Unique Name	mRNA_2419
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1394
Alignment location	scaffold_5:299996..301979 -

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Properties


Property Name	Value
TranscriptId	580392
Track	FilteredModels2
ProteinId	580306

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:299996..301979 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580306	gene_2419	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580306	mRNA_2419-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2419	CDS_2419	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:299996..301979-
coding sequence from alignment at scaffold_5:299996..301979-

mRNA sequence

>mRNA_2419 ID=mRNA_2419|Name=jgi.p|Nanoce1779_2|580306|organism=Nannochloropsis oceanica|type=mRNA|length=1394bp
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAACACAGCTGTTCAA
GAGGCGTTGCCTGATGACCGAGCCCTAATCCCCACCCGCGACCCCCACAA
ACGACTGAAACGCACCTTTTTCCTAGACGCCGGCAAGGCCGCCATGCAAG
TCATCCATTTGCCTCTTAAAACCATCATGCTCGGAATCCAGAAGCTGCTC
TCCCTTGGAAAAGGGGGAGGGAAGAAGGGAGGAAAGAAGCTGCAGCACCC
GCAGCAGTCATCCTCTGCGACCAAGAGAGGAGTTTTGGACATGGCGTCGT
TAACGGAGGAAGAATTGTTGTGGGTGGAAGAGGTGTATCAACCCCTTATT
GCCATGCCCGGCATCGCGGACCGGGGGCTTGCTGTCAAGATGCCCATCGA
CCGGGAGTGTGTCGCTCGATACTTTATCGCTGCCCAGTGGAAGCCGGCCA
TGAGGGGCCAGCCGACAGTGGACGCAATTTTACGCACTCTGAGATGGAGG
GAGGATGAACGAGTAGCAGTGTTGGAACCAGAAGACGTACTAGCACAGGC
CTGGGATGGCTACCTGTACGTCAACGGCACGGACAGGATTGGGCGGCCGA
TGATTTATTTTAGACCGGCGTTTCAGGCCAATCAACATCCCGAGAAAGCG
ATCCAGTACCTAGTCTACACCCTCGAACGTGCTCTGGACCTCTCCCGGGA
AGAGAACGGAGGGGTCGAGGCCTACTCCTTCGTGATTGATTGCAGTGGAT
TTTCACTTTCCAACATTCCCCCGGTCAATATCATCAAGCAGACATTTACG
CTGCTTCATCACCACTATCCTACCCGTGTGGGGTTTATTGTCTTTTTGTA
CACAGGCTCGGCGTTCCAGTTGCTCTGGAAGGTGCTTACCCCCTTGGTCA
GCCCTATGACGAGAAACAAGATTTTGTTTGTCCCTGCAGGGAAGGAGAAG
AATGAATTGTTGAAAAGAGTGGAAGAAGAGCAGTTGGACGAGAGATATGG
AGGGCAGAGGGGCTTTTCATTTGTGCCGCATGAGTACTTTGGGGTGAGTG
AGGAGGAGGCGAAGAAGATGCATGAGAAGGAAGGGAAGAATGAAGTTAAG
GGAGGGGGGAAGGACAAAGGGAGGGACGAGGGGAAGAGAGGAAAGACATG
TGGAGGGGGCGACAGCTAAACGCCCAAGTTGAGTCGTGAAAGCAGGACAA
GGGGGATGGGAGGGAAGAGGGAAAGAGGGAGGGGAGCTGAAGGAAGTGGG
ATGAGAGATTGATTCTCTCTTGTGAGTTTAACTGTTCAATAGTCGAGTTT
GTACAATTCAATTGTAGGGGAAATGTAGGTGCATGCAGAGTGCGTAGGGG
TAGTCCCCAGAGAGAGGGAGAGGGATGGCAATGATGGAAGGGGA

protein sequence of jgi.p|Nanoce1779_2|580306

>mRNA_2419-protein ID=mRNA_2419-protein|Name=jgi.p|Nanoce1779_2|580306|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MQVIHLPLKTIMLGIQKLLSLGKGGGKKGGKKLQHPQQSSSATKRGVLDM
ASLTEEELLWVEEVYQPLIAMPGIADRGLAVKMPIDRECVARYFIAAQWK
PAMRGQPTVDAILRTLRWREDERVAVLEPEDVLAQAWDGYLYVNGTDRIG
RPMIYFRPAFQANQHPEKAIQYLVYTLERALDLSREENGGVEAYSFVIDC
SGFSLSNIPPVNIIKQTFTLLHHHYPTRVGFIVFLYTGSAFQLLWKVLTP
LVSPMTRNKILFVPAGKEKNELLKRVEEEQLDERYGGQRGFSFVPHEYFG
VSEEEAKKMHEKEGKNEVKGGGKDKGRDEGKRGKTCGGGDS*

mRNA from alignment at scaffold_5:299996..301979-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2419 ID=mRNA_2419|Name=jgi.p|Nanoce1779_2|580306|organism=Nannochloropsis oceanica|type=mRNA|length=1984bp|location=Sequence derived from alignment at scaffold_5:299996..301979- (Nannochloropsis oceanica)
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAACACAGCTGTTCAA
GAGGCGTTGCCTGATGACCGAGGTAAGTACGTCCGTATTGTCTTGGGCGA
CCACTGTGATCCCTCAGATCTGCAATATGCATGCATATCCGGTTTTTATT
GCTTTACGGTGTGATGGCATGCTTCGGAAGTGCCCGGTAGCAGTTGGATG
GGTGGTTGTGTCGGTGAGTGCAGTAACCATGAATCCGCACTTTATTGGGT
TCCTTGTTCGACCCCTTCCCCCCCTCCCTTTTAATTTTTTAAAAAAGGAA
CGTATCGCATAAATTTTCTACCTCTTCTGACTCTTTTTCCTTTCTCTCAT
TTCTCCCTCCTTTCCCAAAAACCACCAGCCCTAATCCCCACCCGCGACCC
CCACAAACGACTGAAACGCACCTTTTTCCTAGACGCCGGCAAGGCCGCCA
TGCAAGTCATCCATTTGCCTCTTAAAACCATCATGCTCGGAATCCAGAAG
CTGCTCTCCCTTGGAAAAGGGGGAGGGAAGAAGGGAGGAAAGAAGCTGCA
GCACCCGCAGCAGTCATCCTCTGCGACCAAGAGAGGAGTTTTGGACATGG
CGTCGTTAACGGAGGAAGAATTGTTGTGGGTGGAAGAGGTGTATCAACGT
AAGTAGATAGGGTAGGAGGAAGAATGAGAAGGAGGGAGGGGAGTAGGGAA
AGATAGGGAAGGCGGGCAAAGGAGCTGGCATGGATTCCCACAATCCCCTT
ACCCGTCCTCCATCCCTCTCTCCCTACCTCAAGCCCTTATTGCCATGCCC
GGCATCGCGGACCGGGGGCTTGCTGTCAAGATGCCCATCGACCGGGAGTG
TGTCGCTCGATACTTTATCGCTGCCCAGTGGAAGCCGGCCATGAGGGGCC
AGCCGACAGTGGACGCAATTTTACGCACTCTGAGATGGAGGGAGGATGAA
CGAGTAGCAGTGTTGGAACCAGAAGACGTACTAGCACAGGCCTGGGATGG
CTACCTGTACGTCAACGGCACGGACAGGATTGGGCGGCCGATGATTTATT
TTAGACCGGCGTTTCAGGTAGGATCCTGTCGTCTCCCTCCTTCCTTCCCT
CCCTCCCCGTATTCTTTTCCTCCGGTCTTCCTTGACCTGTTGTTGGCTGG
GTAGGACCCACACAACACCTTCCCTCAACCACACACACGCACACCTCATC
CTCCTCTCATCCCTAGGCCAATCAACATCCCGAGAAAGCGATCCAGTACC
TAGTCTACACCCTCGAACGTGCTCTGGACCTCTCCCGGGAAGAGAACGGA
GGGGTCGAGGCCTACTCCTTCGTGATTGATTGCAGTGGATTTTCACTTTC
CAACATTCCCCCGGTCAATATCATCAAGCAGACATTTACGCTGCTTCATC
ACCACTATCCTACCCGTGTGGGGTTTATTGTCTTTTTGTACACAGGCTCG
GCGTTCCAGTTGCTCTGGAAGGTGCTTACCCCCTTGGTCAGCCCTATGAC
GAGAAACAAGATTTTGTTTGTCCCTGCAGGGAAGGAGAAGAATGAATTGT
TGAAAAGAGTGGAAGAAGAGCAGTTGGACGAGAGATATGGAGGGCAGAGG
GGCTTTTCATTTGTGCCGCATGAGTACTTTGGGGTGAGTGAGGAGGAGGC
GAAGAAGATGCATGAGAAGGAAGGGAAGAATGAAGTTAAGGGAGGGGGGA
AGGACAAAGGGAGGGACGAGGGGAAGAGAGGAAAGACATGTGGAGGGGGC
GACAGCTAAACGCCCAAGTTGAGTCGTGAAAGCAGGACAAGGGGGATGGG
AGGGAAGAGGGAAAGAGGGAGGGGAGCTGAAGGAAGTGGGATGAGAGATT
GATTCTCTCTTGTGAGTTTAACTGTTCAATAGTCGAGTTTGTACAATTCA
ATTGTAGGGGAAATGTAGGTGCATGCAGAGTGCGTAGGGGTAGTCCCCAG
AGAGAGGGAGAGGGATGGCAATGATGGAAGGGGA

Coding sequence (CDS) from alignment at scaffold_5:299996..301979-

>mRNA_2419 ID=mRNA_2419|Name=jgi.p|Nanoce1779_2|580306|organism=Nannochloropsis oceanica|type=CDS|length=3078bp|location=Sequence derived from alignment at scaffold_5:299996..301979- (Nannochloropsis oceanica)
GCCAATCAACATCCCGAGAAAGCGATCCAGTACCTAGTCTACACCCTCGA
ACGTGCTCTGGACCTCTCCCGGGAAGAGAACGGAGGGGTCGAGGCCTACT
CCTTCGTGATTGATTGCAGTGGATTTTCACTTTCCAACATTCCCCCGGTC
AATATCATCAAGCAGACATTTACGCTGCTTCATCACCACTATCCTACCCG
TGTGGGGTTTATTGTCTTTTTGTACACAGGCTCGGCGTTCCAGTTGCTCT
GGAAGGTGCTTACCCCCTTGGTCAGCCCTATGACGAGAAACAAGATTTTG
TTTGTCCCTGCAGGGAAGGAGAAGAATGAATTGTTGAAAAGAGTGGAAGA
AGAGCAGTTGGACGAGAGATATGGAGGGCAGAGGGGCTTTTCATTTGTGC
CGCATGAGTACTTTGGGGTGAGTGAGGAGGAGGCGAAGAAGATGCATGAG
AAGGAAGGGAAGAATGAAGTTAAGGGAGGGGGGAAGGACAAAGGGAGGGA
CGAGGGGAAGAGAGGAAAGACATGTGGAGGGGGCGACAGCTAACCCTTAT
TGCCATGCCCGGCATCGCGGACCGGGGGCTTGCTGTCAAGATGCCCATCG
ACCGGGAGTGTGTCGCTCGATACTTTATCGCTGCCCAGTGGAAGCCGGCC
ATGAGGGGCCAGCCGACAGTGGACGCAATTTTACGCACTCTGAGATGGAG
GGAGGATGAACGAGTAGCAGTGTTGGAACCAGAAGACGTACTAGCACAGG
CCTGGGATGGCTACCTGTACGTCAACGGCACGGACAGGATTGGGCGGCCG
ATGATTTATTTTAGACCGGCGTTTCAGATGCAAGTCATCCATTTGCCTCT
TAAAACCATCATGCTCGGAATCCAGAAGCTGCTCTCCCTTGGAAAAGGGG
GAGGGAAGAAGGGAGGAAAGAAGCTGCAGCACCCGCAGCAGTCATCCTCT
GCGACCAAGAGAGGAGTTTTGGACATGGCGTCGTTAACGGAGGAAGAATT
GTTGTGGGTGGAAGAGGTGTATCAACGCCAATCAACATCCCGAGAAAGCG
ATCCAGTACCTAGTCTACACCCTCGAACGTGCTCTGGACCTCTCCCGGGA
AGAGAACGGAGGGGTCGAGGCCTACTCCTTCGTGATTGATTGCAGTGGAT
TTTCACTTTCCAACATTCCCCCGGTCAATATCATCAAGCAGACATTTACG
CTGCTTCATCACCACTATCCTACCCGTGTGGGGTTTATTGTCTTTTTGTA
CACAGGCTCGGCGTTCCAGTTGCTCTGGAAGGTGCTTACCCCCTTGGTCA
GCCCTATGACGAGAAACAAGATTTTGTTTGTCCCTGCAGGGAAGGAGAAG
AATGAATTGTTGAAAAGAGTGGAAGAAGAGCAGTTGGACGAGAGATATGG
AGGGCAGAGGGGCTTTTCATTTGTGCCGCATGAGTACTTTGGGGTGAGTG
AGGAGGAGGCGAAGAAGATGCATGAGAAGGAAGGGAAGAATGAAGTTAAG
GGAGGGGGGAAGGACAAAGGGAGGGACGAGGGGAAGAGAGGAAAGACATG
TGGAGGGGGCGACAGCTAACCCTTATTGCCATGCCCGGCATCGCGGACCG
GGGGCTTGCTGTCAAGATGCCCATCGACCGGGAGTGTGTCGCTCGATACT
TTATCGCTGCCCAGTGGAAGCCGGCCATGAGGGGCCAGCCGACAGTGGAC
GCAATTTTACGCACTCTGAGATGGAGGGAGGATGAACGAGTAGCAGTGTT
GGAACCAGAAGACGTACTAGCACAGGCCTGGGATGGCTACCTGTACGTCA
ACGGCACGGACAGGATTGGGCGGCCGATGATTTATTTTAGACCGGCGTTT
CAGATGCAAGTCATCCATTTGCCTCTTAAAACCATCATGCTCGGAATCCA
GAAGCTGCTCTCCCTTGGAAAAGGGGGAGGGAAGAAGGGAGGAAAGAAGC
TGCAGCACCCGCAGCAGTCATCCTCTGCGACCAAGAGAGGAGTTTTGGAC
ATGGCGTCGTTAACGGAGGAAGAATTGTTGTGGGTGGAAGAGGTGTATCA
ACGCCAATCAACATCCCGAGAAAGCGATCCAGTACCTAGTCTACACCCTC
GAACGTGCTCTGGACCTCTCCCGGGAAGAGAACGGAGGGGTCGAGGCCTA
CTCCTTCGTGATTGATTGCAGTGGATTTTCACTTTCCAACATTCCCCCGG
TCAATATCATCAAGCAGACATTTACGCTGCTTCATCACCACTATCCTACC
CGTGTGGGGTTTATTGTCTTTTTGTACACAGGCTCGGCGTTCCAGTTGCT
CTGGAAGGTGCTTACCCCCTTGGTCAGCCCTATGACGAGAAACAAGATTT
TGTTTGTCCCTGCAGGGAAGGAGAAGAATGAATTGTTGAAAAGAGTGGAA
GAAGAGCAGTTGGACGAGAGATATGGAGGGCAGAGGGGCTTTTCATTTGT
GCCGCATGAGTACTTTGGGGTGAGTGAGGAGGAGGCGAAGAAGATGCATG
AGAAGGAAGGGAAGAATGAAGTTAAGGGAGGGGGGAAGGACAAAGGGAGG
GACGAGGGGAAGAGAGGAAAGACATGTGGAGGGGGCGACAGCTAACCCTT
ATTGCCATGCCCGGCATCGCGGACCGGGGGCTTGCTGTCAAGATGCCCAT
CGACCGGGAGTGTGTCGCTCGATACTTTATCGCTGCCCAGTGGAAGCCGG
CCATGAGGGGCCAGCCGACAGTGGACGCAATTTTACGCACTCTGAGATGG
AGGGAGGATGAACGAGTAGCAGTGTTGGAACCAGAAGACGTACTAGCACA
GGCCTGGGATGGCTACCTGTACGTCAACGGCACGGACAGGATTGGGCGGC
CGATGATTTATTTTAGACCGGCGTTTCAGATGCAAGTCATCCATTTGCCT
CTTAAAACCATCATGCTCGGAATCCAGAAGCTGCTCTCCCTTGGAAAAGG
GGGAGGGAAGAAGGGAGGAAAGAAGCTGCAGCACCCGCAGCAGTCATCCT
CTGCGACCAAGAGAGGAGTTTTGGACATGGCGTCGTTAACGGAGGAAGAA
TTGTTGTGGGTGGAAGAGGTGTATCAAC

Synonyms

Publications