jgi.p|Nanoce1779_2|328628, mRNA_2418 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|328628
Unique NamemRNA_2418
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length913
Alignment locationscaffold_5:296596..298049 -

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Properties
Property NameValue
TranscriptId328714
TrackFilteredModels2
ProteinId328628
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:296596..298049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|328628gene_2418Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|328628mRNA_2418-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2418CDS_2418Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2418 ID=mRNA_2418|Name=jgi.p|Nanoce1779_2|328628|organism=Nannochloropsis oceanica|type=mRNA|length=913bp
GGGTTCTTGTTGGTGCCTGGGCGGTAGTTCTCGGTTTTGATTCTTCTATG
TACTCATTCATTGATCTCCGCCCTCTCCACCACGTCCGCCCTCCATTTCT
CCGTCCCTTCATTATCTTTCGTATCTTTCAACCTCGCACAGCACGTCTAC
ATGTCCCTGAATATCGCCAGCTCCAAGGGGAAGGAGGGGGGGAAAGTGCC
CCGGAAGAAGAAGGGGACGCCGAAGACCAAACCGGTCAAGGTTCGGCAGA
TGGATATTGATGACTTAGCCAAAGTATACGCCTTGGGCGAGGAGGTCTTC
ACGCAAGAGCTCTACCCTAATCTGTACTCCATCTGGAGCGAAGCTGAGGT
GGTGGAGCTGTTTGGCTCCGATAGCGATACATGCTTCGTGTGCGAGGCGT
CGGATAAGACTTTCTTGGGATTTGTCTTGGGGACAGAGATCGAGAAAAAA
GGCAGCAGCTGGCGGTACGGCTACTTACTCTGGCTGGCCGTCTCGCCCCA
AGCACAGGGCCTGGGCGTAGGTCGGCGGCTGCTGAAGGAATTCCAAGACA
CGATGGAGCAGAATGGCTGTCGGTTGCTGCTGTGTGACACTCAAGCCGAC
AATTTGGCAGCGCGAGCATTTTTTGAAAAATCCGGTTTTCAAGATTGGGA
GGATCACGTCTATTACACCAAGGACATGCAGGCAGAGGGCAAGGGGGAGG
AAAGGGAGGGGCCGGTGGAGGGAAGGATGGTAGAAAGGGGGGATGTGCAG
AAGACGGTTAAGGGTATACCACAGCCGCGGTTGACCCGGTTAACCAAGAC
AAAGAAAGTAGGGGAGAAGAAGGTGGGCGAGAAGAAAAGCGGCACAAAAT
GATGATATAATCTAAGGTTGGACAAGAAGCTACATAGAGATATCTTGTTG
CGAGCGTCACATT
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protein sequence of jgi.p|Nanoce1779_2|328628

>mRNA_2418-protein ID=mRNA_2418-protein|Name=jgi.p|Nanoce1779_2|328628|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MSLNIASSKGKEGGKVPRKKKGTPKTKPVKVRQMDIDDLAKVYALGEEVF
TQELYPNLYSIWSEAEVVELFGSDSDTCFVCEASDKTFLGFVLGTEIEKK
GSSWRYGYLLWLAVSPQAQGLGVGRRLLKEFQDTMEQNGCRLLLCDTQAD
NLAARAFFEKSGFQDWEDHVYYTKDMQAEGKGEEREGPVEGRMVERGDVQ
KTVKGIPQPRLTRLTKTKKVGEKKVGEKKSGTK*
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mRNA from alignment at scaffold_5:296596..298049-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2418 ID=mRNA_2418|Name=jgi.p|Nanoce1779_2|328628|organism=Nannochloropsis oceanica|type=mRNA|length=1454bp|location=Sequence derived from alignment at scaffold_5:296596..298049- (Nannochloropsis oceanica)
GGGTTCTTGTTGGTGCCTGGGCGGTAGTTCTCGGTTTTGATTCTTCTATG
TACTCATTCATTGATCTCCGCCCTCTCCACCACGTCCGCCCTCCATTTCT
CCGTCCCTTCATTATCTTTCGTATCTTTCAACCTCGCACAGCACGTCTAC
ATGTCCCTGAATATCGCCAGCTCCAAGGGGAAGGAGGGGGGGAAAGTGCC
CCGGAAGAAGAAGGGGACGCCGAAGACCAAACCGGTCAAGGTTCGGCAGA
TGGATATTGATGACTTAGGTGCGTGGGTGCCGGAGCTTGGGAGAGAGGGA
GGGAGCGAGGGAAGGCAAGAGTTCTGGATATGAAATTGAGAAATGTATAC
AAAAGGAACTGACAATCCCAACCCCTTTCTTTCCTCCCTCCTTCTTTCTC
TTCCGCCCTCCCTCTCCTCCCCCCCCCCCCTTTACAGCCAAAGTATACGC
CTTGGGCGAGGAGGTCTTCACGCAAGAGCTCTACCCTAATCTGTACTCCA
TCTGGAGCGAAGCTGAGGTGGTGGAGCTGTTTGGCTCCGATAGCGATACA
TGCTTCGTGTGCGAGGCGTCGGATAAGACTTTCTTGGGATTTGTCTTGGG
GACAGAGATCGAGGCAAGTACTCTTTCCATGCCCCCCTCCTTCCCTCCTT
GGTTCCTTTCTCTCTTCCCCCCCTCTCTCTCTCGCTTCCCCTTTTTTTAC
TCTCTTCCCCCCTTTTCTCTCTCTGCCGCGCTCTGTTGTATCACGCCCCT
TGTTCTCCTCGAAGCAAAAACTTCAGGGCCTCCTAGCCTCATTTTCTTCT
TCCTTCCCCCCCTCTCCCCCCCTCTATCTCTCCTTCCAGAAAAAAGGCAG
CAGCTGGCGGTACGGCTACTTACTCTGGCTGGCCGTCTCGCCCCAAGCAC
AGGGCCTGGGCGTAGGTCGGCGGCTGCTGAAGGAATTCCAAGACACGATG
GAGCAGAATGGCTGTCGGTTGCTGCTGTGTGGTGAGTGCCAACATTGTGC
AAAAGGAAGTCGGCGAAGAGGAAGAGAAAGGGCAATTGTCCCTAGTCTTT
CGCAACTTCCATATCCGCGTCAAACGTTTTATCTAATCTCTGCCTTCCTT
CCATGTTCTCCCTTCCTATAACACAAGACACTCAAGCCGACAATTTGGCA
GCGCGAGCATTTTTTGAAAAATCCGGTTTTCAAGATTGGGAGGATCACGT
CTATTACACCAAGGACATGCAGGCAGAGGGCAAGGGGGAGGAAAGGGAGG
GGCCGGTGGAGGGAAGGATGGTAGAAAGGGGGGATGTGCAGAAGACGGTT
AAGGGTATACCACAGCCGCGGTTGACCCGGTTAACCAAGACAAAGAAAGT
AGGGGAGAAGAAGGTGGGCGAGAAGAAAAGCGGCACAAAATGATGATATA
ATCTAAGGTTGGACAAGAAGCTACATAGAGATATCTTGTTGCGAGCGTCA
CATT
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Coding sequence (CDS) from alignment at scaffold_5:296596..298049-

>mRNA_2418 ID=mRNA_2418|Name=jgi.p|Nanoce1779_2|328628|organism=Nannochloropsis oceanica|type=CDS|length=2808bp|location=Sequence derived from alignment at scaffold_5:296596..298049- (Nannochloropsis oceanica)
ACACTCAAGCCGACAATTTGGCAGCGCGAGCATTTTTTGAAAAATCCGGT
TTTCAAGATTGGGAGGATCACGTCTATTACACCAAGGACATGCAGGCAGA
GGGCAAGGGGGAGGAAAGGGAGGGGCCGGTGGAGGGAAGGATGGTAGAAA
GGGGGGATGTGCAGAAGACGGTTAAGGGTATACCACAGCCGCGGTTGACC
CGGTTAACCAAGACAAAGAAAGTAGGGGAGAAGAAGGTGGGCGAGAAGAA
AAGCGGCACAAAATGAAAAAAAGGCAGCAGCTGGCGGTACGGCTACTTAC
TCTGGCTGGCCGTCTCGCCCCAAGCACAGGGCCTGGGCGTAGGTCGGCGG
CTGCTGAAGGAATTCCAAGACACGATGGAGCAGAATGGCTGTCGGTTGCT
GCTGTGTGCCAAAGTATACGCCTTGGGCGAGGAGGTCTTCACGCAAGAGC
TCTACCCTAATCTGTACTCCATCTGGAGCGAAGCTGAGGTGGTGGAGCTG
TTTGGCTCCGATAGCGATACATGCTTCGTGTGCGAGGCGTCGGATAAGAC
TTTCTTGGGATTTGTCTTGGGGACAGAGATCGAGATGTCCCTGAATATCG
CCAGCTCCAAGGGGAAGGAGGGGGGGAAAGTGCCCCGGAAGAAGAAGGGG
ACGCCGAAGACCAAACCGGTCAAGGTTCGGCAGATGGATATTGATGACTT
AGACACTCAAGCCGACAATTTGGCAGCGCGAGCATTTTTTGAAAAATCCG
GTTTTCAAGATTGGGAGGATCACGTCTATTACACCAAGGACATGCAGGCA
GAGGGCAAGGGGGAGGAAAGGGAGGGGCCGGTGGAGGGAAGGATGGTAGA
AAGGGGGGATGTGCAGAAGACGGTTAAGGGTATACCACAGCCGCGGTTGA
CCCGGTTAACCAAGACAAAGAAAGTAGGGGAGAAGAAGGTGGGCGAGAAG
AAAAGCGGCACAAAATGAAAAAAAGGCAGCAGCTGGCGGTACGGCTACTT
ACTCTGGCTGGCCGTCTCGCCCCAAGCACAGGGCCTGGGCGTAGGTCGGC
GGCTGCTGAAGGAATTCCAAGACACGATGGAGCAGAATGGCTGTCGGTTG
CTGCTGTGTGCCAAAGTATACGCCTTGGGCGAGGAGGTCTTCACGCAAGA
GCTCTACCCTAATCTGTACTCCATCTGGAGCGAAGCTGAGGTGGTGGAGC
TGTTTGGCTCCGATAGCGATACATGCTTCGTGTGCGAGGCGTCGGATAAG
ACTTTCTTGGGATTTGTCTTGGGGACAGAGATCGAGATGTCCCTGAATAT
CGCCAGCTCCAAGGGGAAGGAGGGGGGGAAAGTGCCCCGGAAGAAGAAGG
GGACGCCGAAGACCAAACCGGTCAAGGTTCGGCAGATGGATATTGATGAC
TTAGACACTCAAGCCGACAATTTGGCAGCGCGAGCATTTTTTGAAAAATC
CGGTTTTCAAGATTGGGAGGATCACGTCTATTACACCAAGGACATGCAGG
CAGAGGGCAAGGGGGAGGAAAGGGAGGGGCCGGTGGAGGGAAGGATGGTA
GAAAGGGGGGATGTGCAGAAGACGGTTAAGGGTATACCACAGCCGCGGTT
GACCCGGTTAACCAAGACAAAGAAAGTAGGGGAGAAGAAGGTGGGCGAGA
AGAAAAGCGGCACAAAATGAAAAAAAGGCAGCAGCTGGCGGTACGGCTAC
TTACTCTGGCTGGCCGTCTCGCCCCAAGCACAGGGCCTGGGCGTAGGTCG
GCGGCTGCTGAAGGAATTCCAAGACACGATGGAGCAGAATGGCTGTCGGT
TGCTGCTGTGTGCCAAAGTATACGCCTTGGGCGAGGAGGTCTTCACGCAA
GAGCTCTACCCTAATCTGTACTCCATCTGGAGCGAAGCTGAGGTGGTGGA
GCTGTTTGGCTCCGATAGCGATACATGCTTCGTGTGCGAGGCGTCGGATA
AGACTTTCTTGGGATTTGTCTTGGGGACAGAGATCGAGATGTCCCTGAAT
ATCGCCAGCTCCAAGGGGAAGGAGGGGGGGAAAGTGCCCCGGAAGAAGAA
GGGGACGCCGAAGACCAAACCGGTCAAGGTTCGGCAGATGGATATTGATG
ACTTAGACACTCAAGCCGACAATTTGGCAGCGCGAGCATTTTTTGAAAAA
TCCGGTTTTCAAGATTGGGAGGATCACGTCTATTACACCAAGGACATGCA
GGCAGAGGGCAAGGGGGAGGAAAGGGAGGGGCCGGTGGAGGGAAGGATGG
TAGAAAGGGGGGATGTGCAGAAGACGGTTAAGGGTATACCACAGCCGCGG
TTGACCCGGTTAACCAAGACAAAGAAAGTAGGGGAGAAGAAGGTGGGCGA
GAAGAAAAGCGGCACAAAATGAAAAAAAGGCAGCAGCTGGCGGTACGGCT
ACTTACTCTGGCTGGCCGTCTCGCCCCAAGCACAGGGCCTGGGCGTAGGT
CGGCGGCTGCTGAAGGAATTCCAAGACACGATGGAGCAGAATGGCTGTCG
GTTGCTGCTGTGTGCCAAAGTATACGCCTTGGGCGAGGAGGTCTTCACGC
AAGAGCTCTACCCTAATCTGTACTCCATCTGGAGCGAAGCTGAGGTGGTG
GAGCTGTTTGGCTCCGATAGCGATACATGCTTCGTGTGCGAGGCGTCGGA
TAAGACTTTCTTGGGATTTGTCTTGGGGACAGAGATCGAGATGTCCCTGA
ATATCGCCAGCTCCAAGGGGAAGGAGGGGGGGAAAGTGCCCCGGAAGAAG
AAGGGGACGCCGAAGACCAAACCGGTCAAGGTTCGGCAGATGGATATTGA
TGACTTAG
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Synonyms
Publications