jgi.p|Nanoce1779_2|580284, mRNA_2416 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580284
Unique Name	mRNA_2416
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1351
Alignment location	scaffold_5:287109..288797 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580370
Track	FilteredModels2
ProteinId	580284

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:287109..288797 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580284	gene_2416	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580284	mRNA_2416-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2416	CDS_2416	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:287109..288797+
coding sequence from alignment at scaffold_5:287109..288797+

mRNA sequence

>mRNA_2416 ID=mRNA_2416|Name=jgi.p|Nanoce1779_2|580284|organism=Nannochloropsis oceanica|type=mRNA|length=1351bp
CAACAGACCAAGCATCATGGAAAATTCTTACGCCACCCTGAGTTACCGCG
ACTTACGGAAACTGTGTAAGACACATGGCCTAATGTGCAAGGGCAAGACA
GCGGAGTTGCAGGCGCGTCTGGTGGCGCATGCGGCAGCAGAGCAGGGGGG
GAAAGGAGACCTTTCTGCCGCTGCACCGCAAGCAGGAACAGACAGTGATG
AAGGCGAGGCAGCGCAGCAGAAGAAGCGGGAGGATAATTTGAGGGGAAAG
GTGGAACAATTAGGCATGGTCATGGATGGTGGAATCGAAAAAGCTGGGCA
TGCAGACAAGGAGACCGTCGCTGCTCCGACAGCTTTTCCTCCTCGAGCCC
CTAGGGAAGACATGTTCTCAGACATGCCTGACCTCGTGGCCCAGCCTACA
GCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAGCACT
GGAGGCCGTCTCGGAAATTCAAGAGGCAAAGGAGATGAAAGGCTTCAGGC
GCACTGCCATAAATGTGATCAAGCGCAAGACTGAATCGGGCGGGGACGCC
CCTGCTGCCTCCACCACGAAGAATGGCAGCAACACGACGGCAGCGGAGAG
CCATCTCCCAAAGAAGGTGCCCAAAGTTGTCTCCATGCTTCGTAAGCCCT
CGCCTGCCTCTGCATCTGCCACACAAGGCATTGCGGCCATGGCAGGAGGA
GCAAGTGCAGGAGCAGGAAGGGCAACGACGACGGCTGCCGCTCCTGTTAG
CAGTACCAAGAAGGCCACGACGATGAAGACAATTTCCTCGAGTCGCACCA
GTAACAAGATAATTCCCCTTCCCTCCGGCCCGCGGTCCTTTGGCCCTGGC
ACATTTTCCCTGAAGAATAACAGTTGCAACAGCAGCGGTCACCATAAGGC
CGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAAGACTACAATTATCA
AGGCTTCTGCTGCTTCTGCTGATCCTGCACCCTGTGACCCCTCCAAGCCC
CGACCAAAGCCCACCTACAAACCTCATACTGGCAAGCTCCCCCCTTACAA
AGACACACGGAACGTCTCTCTGTTCTCGCCGTGTCCTGTTATGCCCGCCC
GCAAGGCGAGTGTGCCCAAGCAACAGCGAGGACCCTCCACCACGACCATC
ACTTCCAACAAGTACATTTGCAATAGTGGCATTACTGAAAAATGCACCAA
CATCCATGGCAAAAACAAGGAAAATAACAAGGCCGGGTCCACCACAAGCT
ACTGAAGGTGTAGAGGAGGGGGTAGGAGGTTAATTTTGATCGTCGATGCG
GGTACAAACCCAAGAGAAACAAAGAAACCAGGCACACGTCACGGGCTTCG
A

protein sequence of jgi.p|Nanoce1779_2|580284

>mRNA_2416-protein ID=mRNA_2416-protein|Name=jgi.p|Nanoce1779_2|580284|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MENSYATLSYRDLRKLCKTHGLMCKGKTAELQARLVAHAAAEQGGKGDLS
AAAPQAGTDSDEGEAAQQKKREDNLRGKVEQLGMVMDGGIEKAGHADKET
VAAPTAFPPRAPREDMFSDMPDLVAQPTAAAAAAAATTTTTTTALEAVSE
IQEAKEMKGFRRTAINVIKRKTESGGDAPAASTTKNGSNTTAAESHLPKK
VPKVVSMLRKPSPASASATQGIAAMAGGASAGAGRATTTAAAPVSSTKKA
TTMKTISSSRTSNKIIPLPSGPRSFGPGTFSLKNNSCNSSGHHKAAASSS
SSSSSSKTTIIKASAASADPAPCDPSKPRPKPTYKPHTGKLPPYKDTRNV
SLFSPCPVMPARKASVPKQQRGPSTTTITSNKYICNSGITEKCTNIHGKN
KENNKAGSTTSY*

mRNA from alignment at scaffold_5:287109..288797+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2416 ID=mRNA_2416|Name=jgi.p|Nanoce1779_2|580284|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp|location=Sequence derived from alignment at scaffold_5:287109..288797+ (Nannochloropsis oceanica)
CAACAGACCAAGCATCATGGAAAATTCTTACGCCACCCTGAGTTACCGCG
ACTTACGGAAACTGTGTAAGACACATGGCCTAATGTGCAAGGGCAAGACA
GCGGAGTTGCAGGCGCGTCTGGTGGCGCATGCGGCAGCAGAGCAGGGGGG
GAAAGGAGACCTTTCTGCCGCTGCACCGCAAGCAGGAACAGACAGTGATG
AAGGCGAGGCAGCGCAGCAGAAGAAGCGGGAGGATAATTTGAGGGGAAAG
GTGGAACAATTAGGCATGGTCATGGATGGTGGAATCGAAAAAGCTGGGCA
TGCAGACAAGGAGACCGTCGCTGCTCCGACAGCTTTTCCTCCTCGAGCCC
CTAGGGAAGACATGTTCTCAGACATGCCTGACCTCGTGGCCCAGCCTACA
GCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAGCACT
GGAGGCCGTCTCGGAAATTCAAGAGGCAAAGGAGATGAAAGGCTTCAGGC
GCACTGCCATAAATGTGATCAAGCGCAAGACTGAATCGGGCGGGGACGCC
CCTGCTGCCTCCACCACGAAGAATGGCAGCAACACGACGGCAGCGGAGAG
CCATCTCCCAAAGAAGGTGCCCAAAGTTGTCTCCATGCTTCGTAAGCCCT
CGCCTGCCTCTGCATCTGCCACACAAGGCATTGCGGCCATGGCAGGAGGA
GCAAGTGCAGGAGCAGGAAGGGCAACGACGACGGCTGCCGCTCCTGTTAG
CAGTACCAAGAAGGCCACGACGATGAAGACAATTTCCTCGAGTCGCACCA
GTAACAAGATAGTAAGTGGACCTTAATTAAACCCCAACCTATCGCTTTAT
GCCTGCCTCGAAGCCATACCTTATTTTTTCCACAAAATCCCCCCTTAAAT
CCCTCCGCTTTAGATTCCCCTTCCCTCCGGCCCGCGGTCCTTTGGCCCTG
GCACATTTTCCCTGAAGAATAACAGTTGCAACAGCAGCGGTCACCATAAG
GCCGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAAGACTACAATTAT
CAAGGCTTCTGCTGCTTCTGCTGATCCTGCACCCTGTGACCCCTCCAAGC
CCCGACCAAAGCCCACCTACAAACCTCATACTGGCAAGCTCCCCCCTTAC
AAAGGTAAGATAACCTTCTCGTCTAACTCCCACTAAATGTCTGGGAACAG
TAGAGGCACTTAGGAGAGGAGACTGATCATTGATGCACTCGAACGCCGAT
TCACGATGTCATCTGAACAATAATGAAAGCTTCTTCTCAACGGGAAATTC
AAAAGCTTCTTCTTGGCGTTCGTCATTATATTGATAAGGTTTTATCAGCG
ATCGTGATCTCACACATTTAACGAATGAACAACACATTAGACACACGGAA
CGTCTCTCTGTTCTCGCCGTGTCCTGTTATGCCCGCCCGCAAGGCGAGTG
TGCCCAAGCAACAGCGAGGACCCTCCACCACGACCATCACTTCCAACAAG
TACATTTGCAATAGTGGCATTACTGAAAAATGCACCAACATCCATGGCAA
AAACAAGGAAAATAACAAGGCCGGGTCCACCACAAGCTACTGAAGGTGTA
GAGGAGGGGGTAGGAGGTTAATTTTGATCGTCGATGCGGGTACAAACCCA
AGAGAAACAAAGAAACCAGGCACACGTCACGGGCTTCGA

Coding sequence (CDS) from alignment at scaffold_5:287109..288797+

>mRNA_2416 ID=mRNA_2416|Name=jgi.p|Nanoce1779_2|580284|organism=Nannochloropsis oceanica|type=CDS|length=3717bp|location=Sequence derived from alignment at scaffold_5:287109..288797+ (Nannochloropsis oceanica)
ATGGAAAATTCTTACGCCACCCTGAGTTACCGCGACTTACGGAAACTGTG
TAAGACACATGGCCTAATGTGCAAGGGCAAGACAGCGGAGTTGCAGGCGC
GTCTGGTGGCGCATGCGGCAGCAGAGCAGGGGGGGAAAGGAGACCTTTCT
GCCGCTGCACCGCAAGCAGGAACAGACAGTGATGAAGGCGAGGCAGCGCA
GCAGAAGAAGCGGGAGGATAATTTGAGGGGAAAGGTGGAACAATTAGGCA
TGGTCATGGATGGTGGAATCGAAAAAGCTGGGCATGCAGACAAGGAGACC
GTCGCTGCTCCGACAGCTTTTCCTCCTCGAGCCCCTAGGGAAGACATGTT
CTCAGACATGCCTGACCTCGTGGCCCAGCCTACAGCAGCAGCAGCAGCAG
CAGCAGCAACAACAACAACAACAACAACAGCACTGGAGGCCGTCTCGGAA
ATTCAAGAGGCAAAGGAGATGAAAGGCTTCAGGCGCACTGCCATAAATGT
GATCAAGCGCAAGACTGAATCGGGCGGGGACGCCCCTGCTGCCTCCACCA
CGAAGAATGGCAGCAACACGACGGCAGCGGAGAGCCATCTCCCAAAGAAG
GTGCCCAAAGTTGTCTCCATGCTTCGTAAGCCCTCGCCTGCCTCTGCATC
TGCCACACAAGGCATTGCGGCCATGGCAGGAGGAGCAAGTGCAGGAGCAG
GAAGGGCAACGACGACGGCTGCCGCTCCTGTTAGCAGTACCAAGAAGGCC
ACGACGATGAAGACAATTTCCTCGAGTCGCACCAGTAACAAGATAATTCC
CCTTCCCTCCGGCCCGCGGTCCTTTGGCCCTGGCACATTTTCCCTGAAGA
ATAACAGTTGCAACAGCAGCGGTCACCATAAGGCCGCCGCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCAAGACTACAATTATCAAGGCTTCTGCTGCTTC
TGCTGATCCTGCACCCTGTGACCCCTCCAAGCCCCGACCAAAGCCCACCT
ACAAACCTCATACTGGCAAGCTCCCCCCTTACAAAGACACACGGAACGTC
TCTCTGTTCTCGCCGTGTCCTGTTATGCCCGCCCGCAAGGCGAGTGTGCC
CAAGCAACAGCGAGGACCCTCCACCACGACCATCACTTCCAACAAGTACA
TTTGCAATAGTGGCATTACTGAAAAATGCACCAACATCCATGGCAAAAAC
AAGGAAAATAACAAGGCCGGGTCCACCACAAGCTACTGAATGGAAAATTC
TTACGCCACCCTGAGTTACCGCGACTTACGGAAACTGTGTAAGACACATG
GCCTAATGTGCAAGGGCAAGACAGCGGAGTTGCAGGCGCGTCTGGTGGCG
CATGCGGCAGCAGAGCAGGGGGGGAAAGGAGACCTTTCTGCCGCTGCACC
GCAAGCAGGAACAGACAGTGATGAAGGCGAGGCAGCGCAGCAGAAGAAGC
GGGAGGATAATTTGAGGGGAAAGGTGGAACAATTAGGCATGGTCATGGAT
GGTGGAATCGAAAAAGCTGGGCATGCAGACAAGGAGACCGTCGCTGCTCC
GACAGCTTTTCCTCCTCGAGCCCCTAGGGAAGACATGTTCTCAGACATGC
CTGACCTCGTGGCCCAGCCTACAGCAGCAGCAGCAGCAGCAGCAGCAACA
ACAACAACAACAACAACAGCACTGGAGGCCGTCTCGGAAATTCAAGAGGC
AAAGGAGATGAAAGGCTTCAGGCGCACTGCCATAAATGTGATCAAGCGCA
AGACTGAATCGGGCGGGGACGCCCCTGCTGCCTCCACCACGAAGAATGGC
AGCAACACGACGGCAGCGGAGAGCCATCTCCCAAAGAAGGTGCCCAAAGT
TGTCTCCATGCTTCGTAAGCCCTCGCCTGCCTCTGCATCTGCCACACAAG
GCATTGCGGCCATGGCAGGAGGAGCAAGTGCAGGAGCAGGAAGGGCAACG
ACGACGGCTGCCGCTCCTGTTAGCAGTACCAAGAAGGCCACGACGATGAA
GACAATTTCCTCGAGTCGCACCAGTAACAAGATAATTCCCCTTCCCTCCG
GCCCGCGGTCCTTTGGCCCTGGCACATTTTCCCTGAAGAATAACAGTTGC
AACAGCAGCGGTCACCATAAGGCCGCCGCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCAAGACTACAATTATCAAGGCTTCTGCTGCTTCTGCTGATCCTG
CACCCTGTGACCCCTCCAAGCCCCGACCAAAGCCCACCTACAAACCTCAT
ACTGGCAAGCTCCCCCCTTACAAAGACACACGGAACGTCTCTCTGTTCTC
GCCGTGTCCTGTTATGCCCGCCCGCAAGGCGAGTGTGCCCAAGCAACAGC
GAGGACCCTCCACCACGACCATCACTTCCAACAAGTACATTTGCAATAGT
GGCATTACTGAAAAATGCACCAACATCCATGGCAAAAACAAGGAAAATAA
CAAGGCCGGGTCCACCACAAGCTACTGAATGGAAAATTCTTACGCCACCC
TGAGTTACCGCGACTTACGGAAACTGTGTAAGACACATGGCCTAATGTGC
AAGGGCAAGACAGCGGAGTTGCAGGCGCGTCTGGTGGCGCATGCGGCAGC
AGAGCAGGGGGGGAAAGGAGACCTTTCTGCCGCTGCACCGCAAGCAGGAA
CAGACAGTGATGAAGGCGAGGCAGCGCAGCAGAAGAAGCGGGAGGATAAT
TTGAGGGGAAAGGTGGAACAATTAGGCATGGTCATGGATGGTGGAATCGA
AAAAGCTGGGCATGCAGACAAGGAGACCGTCGCTGCTCCGACAGCTTTTC
CTCCTCGAGCCCCTAGGGAAGACATGTTCTCAGACATGCCTGACCTCGTG
GCCCAGCCTACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAAC
AACAACAGCACTGGAGGCCGTCTCGGAAATTCAAGAGGCAAAGGAGATGA
AAGGCTTCAGGCGCACTGCCATAAATGTGATCAAGCGCAAGACTGAATCG
GGCGGGGACGCCCCTGCTGCCTCCACCACGAAGAATGGCAGCAACACGAC
GGCAGCGGAGAGCCATCTCCCAAAGAAGGTGCCCAAAGTTGTCTCCATGC
TTCGTAAGCCCTCGCCTGCCTCTGCATCTGCCACACAAGGCATTGCGGCC
ATGGCAGGAGGAGCAAGTGCAGGAGCAGGAAGGGCAACGACGACGGCTGC
CGCTCCTGTTAGCAGTACCAAGAAGGCCACGACGATGAAGACAATTTCCT
CGAGTCGCACCAGTAACAAGATAATTCCCCTTCCCTCCGGCCCGCGGTCC
TTTGGCCCTGGCACATTTTCCCTGAAGAATAACAGTTGCAACAGCAGCGG
TCACCATAAGGCCGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAAGA
CTACAATTATCAAGGCTTCTGCTGCTTCTGCTGATCCTGCACCCTGTGAC
CCCTCCAAGCCCCGACCAAAGCCCACCTACAAACCTCATACTGGCAAGCT
CCCCCCTTACAAAGACACACGGAACGTCTCTCTGTTCTCGCCGTGTCCTG
TTATGCCCGCCCGCAAGGCGAGTGTGCCCAAGCAACAGCGAGGACCCTCC
ACCACGACCATCACTTCCAACAAGTACATTTGCAATAGTGGCATTACTGA
AAAATGCACCAACATCCATGGCAAAAACAAGGAAAATAACAAGGCCGGGT
CCACCACAAGCTACTGA

Synonyms

Publications