jgi.p|Nanoce1779_2|580279, mRNA_2415 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580279
Unique NamemRNA_2415
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1725
Alignment locationscaffold_5:284125..285849 -

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Properties
Property NameValue
TranscriptId580365
TrackFilteredModels2
ProteinId580279
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:284125..285849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580279gene_2415Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580279mRNA_2415-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2415CDS_2415Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2415 ID=mRNA_2415|Name=jgi.p|Nanoce1779_2|580279|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp
AGGGTTGTTCGGGGAAGCTTTGCAGAAGCCAAGTCTGCGCGCGATGGTGG
AGGATTTGGTGGAAGAAGAGGACGAGAAGGACGAGGAGGAGGACGAGGAG
GAGCAAGGGGGGGGATGATAGATTTTGGTGGCAGAACAAACGGGCTGGAG
ACACTCGCTGAAGATGGAGGCAGAAGGGTCGTAGAGGTCGTCAGAATGCC
ACAGCTGCAGCAGCTGAAACGACGTACCGTCACACAACACCACCAACGCG
GCCGGAGCCGGTCGCTGTCCCCAGAGCGGGAACAACCACATCACCATAAT
CAAACACAGCAACAGCAGCAGCAACAGCAGCGGGATAGATCTGAAGATCG
CAATGTCCATTTCGTGAAAACAGTGAGGAATGGGGCTACGCCTCCCCTTC
CTCCTTCTCTCATGCCCCCCTTCAATCCCTCCTTCTCCCGTAGTGAGCGG
ACAAATGAGAAGCTCACTGTGTTCAGAATCACGGGAATCGTGGAAGGAAG
ACGAGAGGGGGCGGAAAGTGGAGGGGGAGGGATGCTCAAGGACGCGTTGG
CAACAGTGACATCGGCAGCAGCAGATACAGCAGCACGAAATGGAAAAGAT
GGAGGCAAGGATCAGAATACTAGTCGTAGTAAGGGTGATGCATCTAGTAT
GGAGGGTATTTCTTCTTCATCTTCCTCCTTTCTCTCACCTTTTACACCAT
CACCATCATCGGGAGACAGAGGAGTAATAGGAGCAGCGGCAGGAATAGCC
ACGCTTTCGTGTTCCGCCCCTCCGTGTTATCCCGGCGATCCTTCCCGTGG
CAGCGGTCGTGGCAGCGGTGGCTACGGACCGATAAGAGGAGGGCGGGGTG
GAGGACGAGGAAGACCTTTCCGTCATCATACCCCCTACGCCAATTTTCCG
GCACAGTCATCATTTCCTCCGGTGTCATCGAGGGCAAGGTCACGTGGAAG
GGGGGGAGGCAAAAACATGTCGCTAGTCCTCACGCCGTCTTCTTCAGGGG
CAACCAAAGCAGATGTCTCGGCATCTGCCCCCCCTACTACAGCGTCACAA
GTCGCAAGAGGAGCGGCCAATCCATCCCTAATTAGCACTGCCTCCTCGTT
CTCGTCCTCTTCCTCCTCCGCTTCCTCTATTCCTCCTTCAGTGACTCATA
ATCGCTCTCTAATTCGAAATCCGGTGACAGGGCGCATGACTCATCACAAA
GTCTGGGTGCGGCCGACAGATGTCGTCGAGGCTGCAGGAACAGGAGGCAC
AGGATACGCAGGGGGAGCTACCACAGATACGGACGGAACGACCAAGTAGG
AGGAGCACGAACAGCGGTTGCAGCAGCAGCAGCAAGGTATAATGATCGTC
AGCTCTAACTGCCTAACCGCCATCCGATACAAATGGGCGAAAGAGGATTT
TTGTTGGATGATATAAATGAAGGCGAAGACTAGAAGAACACCCAAAAGTA
CCTGTCGAGTAACATAGATAGCGCTTTTTCTCACATACTGTTTTCTATGT
GTGCTACAGGCACTTGGAATTCGACAGATTATATAATGACACCACTCAAT
TTAGACGTATGCTCAGAATGTGAGCTATCACTCTGTTGTGCGAGCGCTAC
AATGTCAACGGCCACTGCACGCTACGTTCGCTCTCATTCTTACACGTTTA
ATCGCTGTCGCACGGTCACGAAGTAAATGGCGTTTTTTCATGGTGGATGG
TTCAAAACAAAGGAAGGCCTCAAGC
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protein sequence of jgi.p|Nanoce1779_2|580279

>mRNA_2415-protein ID=mRNA_2415-protein|Name=jgi.p|Nanoce1779_2|580279|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MIDFGGRTNGLETLAEDGGRRVVEVVRMPQLQQLKRRTVTQHHQRGRSRS
LSPEREQPHHHNQTQQQQQQQQRDRSEDRNVHFVKTVRNGATPPLPPSLM
PPFNPSFSRSERTNEKLTVFRITGIVEGRREGAESGGGGMLKDALATVTS
AAADTAARNGKDGGKDQNTSRSKGDASSMEGISSSSSSFLSPFTPSPSSG
DRGVIGAAAGIATLSCSAPPCYPGDPSRGSGRGSGGYGPIRGGRGGGRGR
PFRHHTPYANFPAQSSFPPVSSRARSRGRGGGKNMSLVLTPSSSGATKAD
VSASAPPTTASQVARGAANPSLISTASSFSSSSSSASSIPPSVTHNRSLI
RNPVTGRMTHHKVWVRPTDVVEAAGTGGTGYAGGATTDTDGTTK*
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mRNA from alignment at scaffold_5:284125..285849-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2415 ID=mRNA_2415|Name=jgi.p|Nanoce1779_2|580279|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp|location=Sequence derived from alignment at scaffold_5:284125..285849- (Nannochloropsis oceanica)
AGGGTTGTTCGGGGAAGCTTTGCAGAAGCCAAGTCTGCGCGCGATGGTGG
AGGATTTGGTGGAAGAAGAGGACGAGAAGGACGAGGAGGAGGACGAGGAG
GAGCAAGGGGGGGGATGATAGATTTTGGTGGCAGAACAAACGGGCTGGAG
ACACTCGCTGAAGATGGAGGCAGAAGGGTCGTAGAGGTCGTCAGAATGCC
ACAGCTGCAGCAGCTGAAACGACGTACCGTCACACAACACCACCAACGCG
GCCGGAGCCGGTCGCTGTCCCCAGAGCGGGAACAACCACATCACCATAAT
CAAACACAGCAACAGCAGCAGCAACAGCAGCGGGATAGATCTGAAGATCG
CAATGTCCATTTCGTGAAAACAGTGAGGAATGGGGCTACGCCTCCCCTTC
CTCCTTCTCTCATGCCCCCCTTCAATCCCTCCTTCTCCCGTAGTGAGCGG
ACAAATGAGAAGCTCACTGTGTTCAGAATCACGGGAATCGTGGAAGGAAG
ACGAGAGGGGGCGGAAAGTGGAGGGGGAGGGATGCTCAAGGACGCGTTGG
CAACAGTGACATCGGCAGCAGCAGATACAGCAGCACGAAATGGAAAAGAT
GGAGGCAAGGATCAGAATACTAGTCGTAGTAAGGGTGATGCATCTAGTAT
GGAGGGTATTTCTTCTTCATCTTCCTCCTTTCTCTCACCTTTTACACCAT
CACCATCATCGGGAGACAGAGGAGTAATAGGAGCAGCGGCAGGAATAGCC
ACGCTTTCGTGTTCCGCCCCTCCGTGTTATCCCGGCGATCCTTCCCGTGG
CAGCGGTCGTGGCAGCGGTGGCTACGGACCGATAAGAGGAGGGCGGGGTG
GAGGACGAGGAAGACCTTTCCGTCATCATACCCCCTACGCCAATTTTCCG
GCACAGTCATCATTTCCTCCGGTGTCATCGAGGGCAAGGTCACGTGGAAG
GGGGGGAGGCAAAAACATGTCGCTAGTCCTCACGCCGTCTTCTTCAGGGG
CAACCAAAGCAGATGTCTCGGCATCTGCCCCCCCTACTACAGCGTCACAA
GTCGCAAGAGGAGCGGCCAATCCATCCCTAATTAGCACTGCCTCCTCGTT
CTCGTCCTCTTCCTCCTCCGCTTCCTCTATTCCTCCTTCAGTGACTCATA
ATCGCTCTCTAATTCGAAATCCGGTGACAGGGCGCATGACTCATCACAAA
GTCTGGGTGCGGCCGACAGATGTCGTCGAGGCTGCAGGAACAGGAGGCAC
AGGATACGCAGGGGGAGCTACCACAGATACGGACGGAACGACCAAGTAGG
AGGAGCACGAACAGCGGTTGCAGCAGCAGCAGCAAGGTATAATGATCGTC
AGCTCTAACTGCCTAACCGCCATCCGATACAAATGGGCGAAAGAGGATTT
TTGTTGGATGATATAAATGAAGGCGAAGACTAGAAGAACACCCAAAAGTA
CCTGTCGAGTAACATAGATAGCGCTTTTTCTCACATACTGTTTTCTATGT
GTGCTACAGGCACTTGGAATTCGACAGATTATATAATGACACCACTCAAT
TTAGACGTATGCTCAGAATGTGAGCTATCACTCTGTTGTGCGAGCGCTAC
AATGTCAACGGCCACTGCACGCTACGTTCGCTCTCATTCTTACACGTTTA
ATCGCTGTCGCACGGTCACGAAGTAAATGGCGTTTTTTCATGGTGGATGG
TTCAAAACAAAGGAAGGCCTCAAGC
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Coding sequence (CDS) from alignment at scaffold_5:284125..285849-

>mRNA_2415 ID=mRNA_2415|Name=jgi.p|Nanoce1779_2|580279|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at scaffold_5:284125..285849- (Nannochloropsis oceanica)
ATGATAGATTTTGGTGGCAGAACAAACGGGCTGGAGACACTCGCTGAAGA
TGGAGGCAGAAGGGTCGTAGAGGTCGTCAGAATGCCACAGCTGCAGCAGC
TGAAACGACGTACCGTCACACAACACCACCAACGCGGCCGGAGCCGGTCG
CTGTCCCCAGAGCGGGAACAACCACATCACCATAATCAAACACAGCAACA
GCAGCAGCAACAGCAGCGGGATAGATCTGAAGATCGCAATGTCCATTTCG
TGAAAACAGTGAGGAATGGGGCTACGCCTCCCCTTCCTCCTTCTCTCATG
CCCCCCTTCAATCCCTCCTTCTCCCGTAGTGAGCGGACAAATGAGAAGCT
CACTGTGTTCAGAATCACGGGAATCGTGGAAGGAAGACGAGAGGGGGCGG
AAAGTGGAGGGGGAGGGATGCTCAAGGACGCGTTGGCAACAGTGACATCG
GCAGCAGCAGATACAGCAGCACGAAATGGAAAAGATGGAGGCAAGGATCA
GAATACTAGTCGTAGTAAGGGTGATGCATCTAGTATGGAGGGTATTTCTT
CTTCATCTTCCTCCTTTCTCTCACCTTTTACACCATCACCATCATCGGGA
GACAGAGGAGTAATAGGAGCAGCGGCAGGAATAGCCACGCTTTCGTGTTC
CGCCCCTCCGTGTTATCCCGGCGATCCTTCCCGTGGCAGCGGTCGTGGCA
GCGGTGGCTACGGACCGATAAGAGGAGGGCGGGGTGGAGGACGAGGAAGA
CCTTTCCGTCATCATACCCCCTACGCCAATTTTCCGGCACAGTCATCATT
TCCTCCGGTGTCATCGAGGGCAAGGTCACGTGGAAGGGGGGGAGGCAAAA
ACATGTCGCTAGTCCTCACGCCGTCTTCTTCAGGGGCAACCAAAGCAGAT
GTCTCGGCATCTGCCCCCCCTACTACAGCGTCACAAGTCGCAAGAGGAGC
GGCCAATCCATCCCTAATTAGCACTGCCTCCTCGTTCTCGTCCTCTTCCT
CCTCCGCTTCCTCTATTCCTCCTTCAGTGACTCATAATCGCTCTCTAATT
CGAAATCCGGTGACAGGGCGCATGACTCATCACAAAGTCTGGGTGCGGCC
GACAGATGTCGTCGAGGCTGCAGGAACAGGAGGCACAGGATACGCAGGGG
GAGCTACCACAGATACGGACGGAACGACCAAGTAG
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Synonyms
Publications