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Properties
| Property Name | Value |
|---|
| TranscriptId | 580349 |
| Track | FilteredModels2 |
| ProteinId | 580263 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:270774..273645 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2411 ID=mRNA_2411|Name=jgi.p|Nanoce1779_2|580263|organism=Nannochloropsis oceanica|type=mRNA|length=2837bp
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
ACGAAGGCTGTTGGCCGAGAGAGACGGGGAGGTTGGTGGGGGAAGCCAGG
TATGTGGATGGCCGACGCCTTTGCATGCACGGGTATGAACGACGTTGAAC
GTTAGGAGACAAGAAGAAAAATATAACCAACCTATTGATGAATGTCCATA
GAGACTCCTGGCACATTTTTTGACACGTCCCGTGGATGTGCCGGCGAACG
ACGGCAACGGCAACAACTCATTGAACAAGAACACACGCACTTCCTTCCTG
TATCTCAGAATTTTTGGCTCATCCACACGCTTGCCACCCCTTTTCCTCTC
CATCATCTCAACCTCAATTTCTTAAGGCGTGCAGTGCTGTAGAATTGCGT
TCCCAAGCGACAGGAATGTCAGATTGGTGGTGGCTCGAGGGAGAAGAAAG
GGCGCTCTTTCTTCGTTCAGGAGGCTCCGCCAAGAAGTTCTGTTACAAGC
GGCGGCGGGTGAATCTGTCCCGTACGCTGTGCACACCACTACACCCTACT
CACCCACACACAAAAAAACACTCGTGCACCAATGCACCAACACACAGGCT
CGTCAAACTTTTCAGCGCAAGATGCCGCACGTCGACATTGTTGAGGAGAA
TGCTCGGCCGAGCAGCTACGGGCGTTATGGCGCAGTCGAGCTGGGCCAGG
ACGAGGAAGGCGCAACCATCAGCGTTCTTCGTCGCCAGCCGCATCAAGAG
GGGAGACGCGGGACGCATGGGAAGATTGGCATGGTTATTGCTGGTTTGGT
GGCGGTGGTCTTGACCGCCGTTGCTGTTGCTTCGAACACCTCTTCTTCCT
CCGCCTCGTCTAATACATCCCCTGCGCGTCTCATGTCCCCCAGCCCTATA
TCCAACACAACCGGGAATGATGTGGCCGGCAACTCACCCAAAGCCTCCAC
GGGGTGGCAGGATATGGTGCCGAAAGACGTCTTAAAAGCCAACTCTTCCT
CCACCGCCTCCTCCTCCTCCTCCTCCTCGTCGTCAAAGGGCAACCATACC
ACAGCCAGAAGGAAGGTCGGAGGCCCTGCGCGAAACTGCACGTTGGACGA
ATGTAAGACCTACAGTGGCTGTGACCCTTCCGCCTTCCCCTTTGTTTGCG
TCGGTGGCTTTGCCAAAGGGGGTTGTGCCAAGGTACAGAGCGCCTGGGAA
CAACCCGGCTGCTCTGATTTCTGTACCCTTGCAGGATGCGCGAGCCAGGC
CCCCACTTGCGGACAATGCAGCCCGGAGGACTGTCACAAGGTTCAGTCTG
TCTGTGGTGCTAACCGTCGATATGCTTGCGTGGAGGGACCGAGCGCGGGA
GGGTGCTCTACGGAGTCGGCGTATTGGCCTCAGGGGATTTTGAATGGCAT
TTGCAAGACTTGCTGTGATCTGAAGACGTGTGCACCTGCCTTGACGTGTG
CGAAATGCACAACAAAACAATGTGCATCTATGTCCATGTGTGGTGCCACA
GAGCCAGTGCAGTGCACGGGGGGAGCTGCGGCGGGTGGGTGTGGAACAAA
GGACTCGTGGGCAACGGCTGGTATGGCCGGCTCCTGTACGGCATGCTGTG
ACACATCTGCCTGTGGTGGAAGCGACGACAGCGATGATGATAGTGATGAT
GCGGCTACGGATGCTGATGCTGATGCAGACTCGACGGAGCCAGCGACGTA
AATTTTGTAATTTGCGGGCTGGAGGGGAATAGAGGACGGACTCGGTCATG
TAGGACTCCGCTTGTGGTGGCGAGTATCAGGATAATGATGAATACAGGTG
AGGATTCTGGTGCTGTTCTAAATACGACGGAGCCGACCTTGTGGAGATGG
AGATGCATTGGAGATGGTGTGGAGACGTAAGAGAGGAGGGTTGTTGAAGT
GTTTTTCTCAGTCTACATCCCCACCACCGCGGGGCAAGAGAGATGAGGAG
AAGAGCTTTTACTCTTACGGGGGAGATGATAAACGCCTGTGAAGATAGGG
ATGAAATCAGGGAAGGCATCGCATTTGTGTTTTGAATAGATTGAAAGGGG
AAGAGGGAGAGAGGAGAAAGGAGGGGAGGAGAGAGAGCAGTTGTAGTCTT
ATATTTCGTCAGGCGTGTAGGAGGAAGAGACGCGACATGATTGAAGAAAA
GGAGGAAGACGACGAGGACGAGGAGGAGTACAGACGAGAGGAGGGTAAAG
CATAGATTACGTCGAGTATATTGGAGAGAGGAAGAGAAGACAGAGACAGA
GATCAAGAATTGAAAAAGGTACAGTCGCTGACTTCATGCCTATTTTTTTC
GTCGTTACGGGGGCAGGCGGGCGGCTTGGGTTTTTTTCATTCTACTCTGC
AAGCACAAAAGGGTGGATTCAAGGATAATCTGAAAGAAAACTCTTCGAAA
CCTCACCAGTGGTAAGTCTTCTTCTATCTTCTTCTACTTCTTTCTATTTC
TCTCCGTGTCATCAACGTTGTGGCCTGCCTTACCCTGTGGGTCACGGATC
TCTTAACCTCATTCTCATCCTCTTCCTTGTCGTCCTCATGACAGAAAGCG
GATTCGATTTTGGTGTCGTCATTGCTCTTACTTTTGAACAGTTTCTCCTG
CCTGCCCTCTTCCTTATTCCCCTCTCCTCCTTTCCCCACTCTCTAGGTGG
TTTGAGGCTTCCTTTCTCCCTTTCCTCAATTCTTCTTCTTGTGTATGTAA
ACGAAACGAAACAAAGTCGAATGGCAGCACTGGTGTCATGCCTCTCCTTT
TTCTCCCAAGGCTTCTGTTTCTCCTTCTCTACCGACTCCCCTCAACCCTT
CTCCTTTCCCCCCTTCGCTTAACGGTCTCTCCCCCCC back to topprotein sequence of jgi.p|Nanoce1779_2|580263 >mRNA_2411-protein ID=mRNA_2411-protein|Name=jgi.p|Nanoce1779_2|580263|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MPHVDIVEENARPSSYGRYGAVELGQDEEGATISVLRRQPHQEGRRGTHG
KIGMVIAGLVAVVLTAVAVASNTSSSSASSNTSPARLMSPSPISNTTGND
VAGNSPKASTGWQDMVPKDVLKANSSSTASSSSSSSSSKGNHTTARRKVG
GPARNCTLDECKTYSGCDPSAFPFVCVGGFAKGGCAKVQSAWEQPGCSDF
CTLAGCASQAPTCGQCSPEDCHKVQSVCGANRRYACVEGPSAGGCSTESA
YWPQGILNGICKTCCDLKTCAPALTCAKCTTKQCASMSMCGATEPVQCTG
GAAAGGCGTKDSWATAGMAGSCTACCDTSACGGSDDSDDDSDDAATDADA
DADSTEPAT* back to topmRNA from alignment at scaffold_5:270774..273645- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2411 ID=mRNA_2411|Name=jgi.p|Nanoce1779_2|580263|organism=Nannochloropsis oceanica|type=mRNA|length=2872bp|location=Sequence derived from alignment at scaffold_5:270774..273645- (Nannochloropsis oceanica)
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGACGAAGGCTGTTGGC
CGAGAGAGACGGGGAGGTTGGTGGGGGAAGCCAGGTATGTGGATGGCCGA
CGCCTTTGCATGCACGGGTATGAACGACGTTGAACGTTAGGAGACAAGAA
GAAAAATATAACCAACCTATTGATGAATGTCCATAGAGACTCCTGGCACA
TTTTTTGACACGTCCCGTGGATGTGCCGGCGAACGACGGCAACGGCAACA
ACTCATTGAACAAGAACACACGCACTTCCTTCCTGTATCTCAGAATTTTT
GGCTCATCCACACGCTTGCCACCCCTTTTCCTCTCCATCATCTCAACCTC
AATTTCTTAAGGCGTGCAGTGCTGTAGAATTGCGTTCCCAAGCGACAGGA
ATGTCAGATTGGTGGTGGCTCGAGGGAGAAGAAAGGGCGCTCTTTCTTCG
TTCAGGAGGCTCCGCCAAGAAGTTCTGTTACAAGCGGCGGCGGGTGAATC
TGTCCCGTACGCTGTGCACACCACTACACCCTACTCACCCACACACAAAA
AAACACTCGTGCACCAATGCACCAACACACAGGCTCGTCAAACTTTTCAG
CGCAAGATGCCGCACGTCGACATTGTTGAGGAGAATGCTCGGCCGAGCAG
CTACGGGCGTTATGGCGCAGTCGAGCTGGGCCAGGACGAGGAAGGCGCAA
CCATCAGCGTTCTTCGTCGCCAGCCGCATCAAGAGGGGAGACGCGGGACG
CATGGGAAGATTGGCATGGTTATTGCTGGTTTGGTGGCGGTGGTCTTGAC
CGCCGTTGCTGTTGCTTCGAACACCTCTTCTTCCTCCGCCTCGTCTAATA
CATCCCCTGCGCGTCTCATGTCCCCCAGCCCTATATCCAACACAACCGGG
AATGATGTGGCCGGCAACTCACCCAAAGCCTCCACGGGGTGGCAGGATAT
GGTGCCGAAAGACGTCTTAAAAGCCAACTCTTCCTCCACCGCCTCCTCCT
CCTCCTCCTCCTCGTCGTCAAAGGGCAACCATACCACAGCCAGAAGGAAG
GTCGGAGGCCCTGCGCGAAACTGCACGTTGGACGAATGTAAGACCTACAG
TGGCTGTGACCCTTCCGCCTTCCCCTTTGTTTGCGTCGGTGGCTTTGCCA
AAGGGGGTTGTGCCAAGGTACAGAGCGCCTGGGAACAACCCGGCTGCTCT
GATTTCTGTACCCTTGCAGGATGCGCGAGCCAGGCCCCCACTTGCGGACA
ATGCAGCCCGGAGGACTGTCACAAGGTTCAGTCTGTCTGTGGTGCTAACC
GTCGATATGCTTGCGTGGAGGGACCGAGCGCGGGAGGGTGCTCTACGGAG
TCGGCGTATTGGCCTCAGGGGATTTTGAATGGCATTTGCAAGACTTGCTG
TGATCTGAAGACGTGTGCACCTGCCTTGACGTGTGCGAAATGCACAACAA
AACAATGTGCATCTATGTCCATGTGTGGTGCCACAGAGCCAGTGCAGTGC
ACGGGGGGAGCTGCGGCGGGTGGGTGTGGAACAAAGGACTCGTGGGCAAC
GGCTGGTATGGCCGGCTCCTGTACGGCATGCTGTGACACATCTGCCTGTG
GTGGAAGCGACGACAGCGATGATGATAGTGATGATGCGGCTACGGATGCT
GATGCTGATGCAGACTCGACGGAGCCAGCGACGTAAATTTTGTAATTTGC
GGGCTGGAGGGGAATAGAGGACGGACTCGGTCATGTAGGACTCCGCTTGT
GGTGGCGAGTATCAGGATAATGATGAATACAGGTGAGGATTCTGGTGCTG
TTCTAAATACGACGGAGCCGACCTTGTGGAGATGGAGATGCATTGGAGAT
GGTGTGGAGACGTAAGAGAGGAGGGTTGTTGAAGTGTTTTTCTCAGTCTA
CATCCCCACCACCGCGGGGCAAGAGAGATGAGGAGAAGAGCTTTTACTCT
TACGGGGGAGATGATAAACGCCTGTGAAGATAGGGATGAAATCAGGGAAG
GCATCGCATTTGTGTTTTGAATAGATTGAAAGGGGAAGAGGGAGAGAGGA
GAAAGGAGGGGAGGAGAGAGAGCAGTTGTAGTCTTATATTTCGTCAGGCG
TGTAGGAGGAAGAGACGCGACATGATTGAAGAAAAGGAGGAAGACGACGA
GGACGAGGAGGAGTACAGACGAGAGGAGGGTAAAGCATAGATTACGTCGA
GTATATTGGAGAGAGGAAGAGAAGACAGAGACAGAGATCAAGAATTGAAA
AAGGTACAGTCGCTGACTTCATGCCTATTTTTTTCGTCGTTACGGGGGCA
GGCGGGCGGCTTGGGTTTTTTTCATTCTACTCTGCAAGCACAAAAGGGTG
GATTCAAGGATAATCTGAAAGAAAACTCTTCGAAACCTCACCAGTGGTAA
GTCTTCTTCTATCTTCTTCTACTTCTTTCTATTTCTCTCCGTGTCATCAA
CGTTGTGGCCTGCCTTACCCTGTGGGTCACGGATCTCTTAACCTCATTCT
CATCCTCTTCCTTGTCGTCCTCATGACAGAAAGCGGATTCGATTTTGGTG
TCGTCATTGCTCTTACTTTTGAACAGTTTCTCCTGCCTGCCCTCTTCCTT
ATTCCCCTCTCCTCCTTTCCCCACTCTCTAGGTGGTTTGAGGCTTCCTTT
CTCCCTTTCCTCAATTCTTCTTCTTGTGTATGTAAACGAAACGAAACAAA
GTCGAATGGCAGCACTGGTGTCATGCCTCTCCTTTTTCTCCCAAGGCTTC
TGTTTCTCCTTCTCTACCGACTCCCCTCAACCCTTCTCCTTTCCCCCCTT
CGCTTAACGGTCTCTCCCCCCC back to topCoding sequence (CDS) from alignment at scaffold_5:270774..273645- >mRNA_2411 ID=mRNA_2411|Name=jgi.p|Nanoce1779_2|580263|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_5:270774..273645- (Nannochloropsis oceanica)
ATGCCGCACGTCGACATTGTTGAGGAGAATGCTCGGCCGAGCAGCTACGG
GCGTTATGGCGCAGTCGAGCTGGGCCAGGACGAGGAAGGCGCAACCATCA
GCGTTCTTCGTCGCCAGCCGCATCAAGAGGGGAGACGCGGGACGCATGGG
AAGATTGGCATGGTTATTGCTGGTTTGGTGGCGGTGGTCTTGACCGCCGT
TGCTGTTGCTTCGAACACCTCTTCTTCCTCCGCCTCGTCTAATACATCCC
CTGCGCGTCTCATGTCCCCCAGCCCTATATCCAACACAACCGGGAATGAT
GTGGCCGGCAACTCACCCAAAGCCTCCACGGGGTGGCAGGATATGGTGCC
GAAAGACGTCTTAAAAGCCAACTCTTCCTCCACCGCCTCCTCCTCCTCCT
CCTCCTCGTCGTCAAAGGGCAACCATACCACAGCCAGAAGGAAGGTCGGA
GGCCCTGCGCGAAACTGCACGTTGGACGAATGTAAGACCTACAGTGGCTG
TGACCCTTCCGCCTTCCCCTTTGTTTGCGTCGGTGGCTTTGCCAAAGGGG
GTTGTGCCAAGGTACAGAGCGCCTGGGAACAACCCGGCTGCTCTGATTTC
TGTACCCTTGCAGGATGCGCGAGCCAGGCCCCCACTTGCGGACAATGCAG
CCCGGAGGACTGTCACAAGGTTCAGTCTGTCTGTGGTGCTAACCGTCGAT
ATGCTTGCGTGGAGGGACCGAGCGCGGGAGGGTGCTCTACGGAGTCGGCG
TATTGGCCTCAGGGGATTTTGAATGGCATTTGCAAGACTTGCTGTGATCT
GAAGACGTGTGCACCTGCCTTGACGTGTGCGAAATGCACAACAAAACAAT
GTGCATCTATGTCCATGTGTGGTGCCACAGAGCCAGTGCAGTGCACGGGG
GGAGCTGCGGCGGGTGGGTGTGGAACAAAGGACTCGTGGGCAACGGCTGG
TATGGCCGGCTCCTGTACGGCATGCTGTGACACATCTGCCTGTGGTGGAA
GCGACGACAGCGATGATGATAGTGATGATGCGGCTACGGATGCTGATGCT
GATGCAGACTCGACGGAGCCAGCGACGTAA back to top
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