jgi.p|Nanoce1779_2|580260, mRNA_2410 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580260
Unique NamemRNA_2410
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length985
Alignment locationscaffold_5:269335..270773 +

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Properties
Property NameValue
TranscriptId580346
TrackFilteredModels2
ProteinId580260
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:269335..270773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580260gene_2410Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580260mRNA_2410-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2410CDS_2410Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2410 ID=mRNA_2410|Name=jgi.p|Nanoce1779_2|580260|organism=Nannochloropsis oceanica|type=mRNA|length=985bp
GAAATACGAGGACCAGGATGCCGGGAAGAAATGGTGCGTGGCTTCACCGC
ATAAACTCCGCTCCCTCCCTCTGTCCCTCCCTCCCTCCCTCCCGCCCTCC
CCCACTCTCTCTCCCTCCTCCTTTTCAGGTACGGCCATGGCATCTTCGAC
CGGCGTCCGAGCAAAGATGGGAAGAAAGGGGGAAGCAGTAGAGGAGTGGG
AGGGGAAGGCCGGGAAGGAGGGAGCGGGGGAGGGATTGGCGGGAACGTGT
TCTGGAAGCAGTGGTATTTCCCAGTCAAAACTCGGGGGAGAAATATGGGG
GAGGATGAGGACGATGGGATGGATGGAGCTGACGGAGGGGATTACTTCAA
CCCTTTGTTTGATGGGGAAGGGGGAAGGGCGGAGGCGGCGGCGGCGGAGA
GGGAGTTTGAGTCGTCGGACAGGCGACCGTGGACTGATTTGATTCCACGG
TTTCGCGTCAAGGTAGAGCCGATGACAACATTGAAGCTGAGAAAGAGATT
CTATCCCTTTAAGACCGTGATTGAGCTGGGGGCGGACTACAACACGCAGA
TCGGCGTGTGGCAGTTCAAGTCCTCATGGGAAGATCGAATCATTGGCGGC
CGTCTGACAGTGAAGGGACGAGAGCTTCAGTTTAGCAAGACGTGGCTGGT
GACGCTTGGGGACCAGGACGACATTGCCACGAGGCTCAAGTTCAGGGCCG
GGATAGACACAGGAACCTGGCGCTCATACGCACGGTTGGGCTTCAGGACG
GAACGGCTTCAACCCCTAAACCTGAAAGACGGTGTCACCCTCCGCCGGCG
CCTCCCTCTGGATGGCACCGAGGGCCATGCGAAGCTCGAAGTGAGGGCAA
ATCTGTGTTTGCCCGAGCCGGAGATTGAGTACTCAACGGACAAGAAACGG
TTGATCATGGGGACTGGGGATATACAATTAAGCATCGACGAGCTGAATTT
GTGTTTGGAATATTAGATGTCCTCGCATTGGGGAT
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protein sequence of jgi.p|Nanoce1779_2|580260

>mRNA_2410-protein ID=mRNA_2410-protein|Name=jgi.p|Nanoce1779_2|580260|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MGEDEDDGMDGADGGDYFNPLFDGEGGRAEAAAAEREFESSDRRPWTDLI
PRFRVKVEPMTTLKLRKRFYPFKTVIELGADYNTQIGVWQFKSSWEDRII
GGRLTVKGRELQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGF
RTERLQPLNLKDGVTLRRRLPLDGTEGHAKLEVRANLCLPEPEIEYSTDK
KRLIMGTGDIQLSIDELNLCLEY*
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mRNA from alignment at scaffold_5:269335..270773+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2410 ID=mRNA_2410|Name=jgi.p|Nanoce1779_2|580260|organism=Nannochloropsis oceanica|type=mRNA|length=1439bp|location=Sequence derived from alignment at scaffold_5:269335..270773+ (Nannochloropsis oceanica)
GAAATACGAGGACCAGGATGCCGGGAAGAAATGGTGCGTGGCTTCACCGC
ATAAACTCCGCTCCCTCCCTCTGTCCCTCCCTCCCTCCCTCCCGCCCTCC
CCCACTCTCTCTCCCTCCTCCTTTTCAGGTACGGCCATGGCATCTTCGAC
CGGCGTCCGAGCAAAGATGGGAAGAAAGGGGGAAGCAGTAGAGGAGTGGG
AGGGGAAGGCCGGGAAGGAGGGAGCGGGGGAGGGATTGGCGGGAACGTGT
TCTGGAAGCAGTGGTATTTCCCAGTCAAAACTCGGGGGAGAAATATGGGG
GAGGATGAGGACGATGGGATGGATGGAGCTGACGGAGGGGATTACTTCAA
CCCTTTGTTTGATGGGGAAGGGGGAAGGGCGGAGGCGGCGGCGGCGGAGA
GGGAGTTTGAGTCGTCGGACAGGCGACCGTGGACTGATTTGATTCCACGG
TTTCGCGTCAAGGTAGAGCCGATGACAACATTGAAGCTGAGAAAGAGATT
CTATCCCTTTAAGACCGTGATTGAGCTGGGGGCGGACTACAACACGCAGG
TAGGGAGTTAGGGATGGAGGGAGAGAGAGGAGGGAGGGAGGAATAAATGG
AGGGAGGGAGAGAGGGAGAGAGGAAAATCAGGTGTTTGAGACGGAAAAAT
AGTAAGGGTTGAACCAACGGCTTCCCGCTCGCTGTCTCGAGAACAGAGCA
CACTAGTCCATCACACTCATTACTCACTCCTTCCCTCCCTTCCTTCCTCA
GATCGGCGTGTGGCAGTTCAAGTCCTCATGGGAAGATCGAATCATTGGCG
GCCGTCTGACAGTGAAGGGACGAGAGCTTCAGTTTAGCAAGACGTGGCTG
GTGACGCTTGGGGACCAGGACGACATTGCCACGAGGCTCAAGTTCAGGGC
CGGGATAGACACAGGAACCTGGCGCTCATACGCACGGTTGGGCTTCAGGA
CGGAACGGTGAGAAATCGATAGTTACACGATATTTTCGTTTTAAAATTTG
TTATGTTTTCCTCTGGGGTTGCGGCGGTTGATTTCTTTGGTAGGGGCCGA
GAGGGGGCCTGCTTTGGTGTTTTTTTTCCCCCTCCGTTTTGCTATCCCTT
GTTCTTCCTCCACCGACAGATGCTTCCTTTCTTACTCGCTTGATAATGAC
CACATTAACTTACCCCCCTTTCCTCCCTTTCTCATTCTTTCCATCCATCC
ATCCTTCAGGCTTCAACCCCTAAACCTGAAAGACGGTGTCACCCTCCGCC
GGCGCCTCCCTCTGGATGGCACCGAGGGCCATGCGAAGCTCGAAGTGAGG
GCAAATCTGTGTTTGCCCGAGCCGGAGATTGAGTACTCAACGGACAAGAA
ACGGTTGATCATGGGGACTGGGGATATACAATTAAGCATCGACGAGCTGA
ATTTGTGTTTGGAATATTAGATGTCCTCGCATTGGGGAT
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Coding sequence (CDS) from alignment at scaffold_5:269335..270773+

>mRNA_2410 ID=mRNA_2410|Name=jgi.p|Nanoce1779_2|580260|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_5:269335..270773+ (Nannochloropsis oceanica)
ATGGGGGAGGATGAGGACGATGGGATGGATGGAGCTGACGGAGGGGATTA
CTTCAACCCTTTGTTTGATGGGGAAGGGGGAAGGGCGGAGGCGGCGGCGG
CGGAGAGGGAGTTTGAGTCGTCGGACAGGCGACCGTGGACTGATTTGATT
CCACGGTTTCGCGTCAAGGTAGAGCCGATGACAACATTGAAGCTGAGAAA
GAGATTCTATCCCTTTAAGACCGTGATTGAGCTGGGGGCGGACTACAACA
CGCAGATCGGCGTGTGGCAGTTCAAGTCCTCATGGGAAGATCGAATCATT
GGCGGCCGTCTGACAGTGAAGGGACGAGAGCTTCAGTTTAGCAAGACGTG
GCTGGTGACGCTTGGGGACCAGGACGACATTGCCACGAGGCTCAAGTTCA
GGGCCGGGATAGACACAGGAACCTGGCGCTCATACGCACGGTTGGGCTTC
AGGACGGAACGGCTTCAACCCCTAAACCTGAAAGACGGTGTCACCCTCCG
CCGGCGCCTCCCTCTGGATGGCACCGAGGGCCATGCGAAGCTCGAAGTGA
GGGCAAATCTGTGTTTGCCCGAGCCGGAGATTGAGTACTCAACGGACAAG
AAACGGTTGATCATGGGGACTGGGGATATACAATTAAGCATCGACGAGCT
GAATTTGTGTTTGGAATATTAGATGGGGGAGGATGAGGACGATGGGATGG
ATGGAGCTGACGGAGGGGATTACTTCAACCCTTTGTTTGATGGGGAAGGG
GGAAGGGCGGAGGCGGCGGCGGCGGAGAGGGAGTTTGAGTCGTCGGACAG
GCGACCGTGGACTGATTTGATTCCACGGTTTCGCGTCAAGGTAGAGCCGA
TGACAACATTGAAGCTGAGAAAGAGATTCTATCCCTTTAAGACCGTGATT
GAGCTGGGGGCGGACTACAACACGCAGATCGGCGTGTGGCAGTTCAAGTC
CTCATGGGAAGATCGAATCATTGGCGGCCGTCTGACAGTGAAGGGACGAG
AGCTTCAGTTTAGCAAGACGTGGCTGGTGACGCTTGGGGACCAGGACGAC
ATTGCCACGAGGCTCAAGTTCAGGGCCGGGATAGACACAGGAACCTGGCG
CTCATACGCACGGTTGGGCTTCAGGACGGAACGGCTTCAACCCCTAAACC
TGAAAGACGGTGTCACCCTCCGCCGGCGCCTCCCTCTGGATGGCACCGAG
GGCCATGCGAAGCTCGAAGTGAGGGCAAATCTGTGTTTGCCCGAGCCGGA
GATTGAGTACTCAACGGACAAGAAACGGTTGATCATGGGGACTGGGGATA
TACAATTAAGCATCGACGAGCTGAATTTGTGTTTGGAATATTAGATGGGG
GAGGATGAGGACGATGGGATGGATGGAGCTGACGGAGGGGATTACTTCAA
CCCTTTGTTTGATGGGGAAGGGGGAAGGGCGGAGGCGGCGGCGGCGGAGA
GGGAGTTTGAGTCGTCGGACAGGCGACCGTGGACTGATTTGATTCCACGG
TTTCGCGTCAAGGTAGAGCCGATGACAACATTGAAGCTGAGAAAGAGATT
CTATCCCTTTAAGACCGTGATTGAGCTGGGGGCGGACTACAACACGCAGA
TCGGCGTGTGGCAGTTCAAGTCCTCATGGGAAGATCGAATCATTGGCGGC
CGTCTGACAGTGAAGGGACGAGAGCTTCAGTTTAGCAAGACGTGGCTGGT
GACGCTTGGGGACCAGGACGACATTGCCACGAGGCTCAAGTTCAGGGCCG
GGATAGACACAGGAACCTGGCGCTCATACGCACGGTTGGGCTTCAGGACG
GAACGGCTTCAACCCCTAAACCTGAAAGACGGTGTCACCCTCCGCCGGCG
CCTCCCTCTGGATGGCACCGAGGGCCATGCGAAGCTCGAAGTGAGGGCAA
ATCTGTGTTTGCCCGAGCCGGAGATTGAGTACTCAACGGACAAGAAACGG
TTGATCATGGGGACTGGGGATATACAATTAAGCATCGACGAGCTGAATTT
GTGTTTGGAATATTAG
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Synonyms
Publications