jgi.p|Nanoce1779_2|580257, mRNA_2409 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580257
Unique Name	mRNA_2409
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1141
Alignment location	scaffold_5:267701..268841 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580343
Track	FilteredModels2
ProteinId	580257

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:267701..268841 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580257	gene_2409	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580257	mRNA_2409-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2409	CDS_2409	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:267701..268841+
coding sequence from alignment at scaffold_5:267701..268841+

mRNA sequence

>mRNA_2409 ID=mRNA_2409|Name=jgi.p|Nanoce1779_2|580257|organism=Nannochloropsis oceanica|type=mRNA|length=1141bp
GTCTGTCTGTGGGCATTTCAATAGCTGGAGGGCATGCAAGACTACAACCA
CCCTACAAATATGGCCCTGCCAGTAGGTAGGGGTAGACAACCGTTTGTTC
TATATGTGCATGCTGGTGTGTTTGGAGCTGGCTCTACTGGGCACGGGATC
TTCATCGCATCCCTATTCCTTATTTGGTCAGGCAGACGGACCTTTCTTGA
AAACAACGCGGGCACACATAATTTCGTTTGATTCCACACTTTCTAGTTTT
GACGCCCTTCCTTGGCCCTTTCCTGGTCATCAGCCGTATCCATCTCCGCC
CCCGTCACCCCTCTACCCCCCCCGTAATGTCTACGCTCAAGGAGTACAGG
GGTGGGGAGGTTTTTTAAGGGGAAAGGCGCACTCGGCAGGAGGCGGCAGC
GCAGCTGCTCTGGCATGGACACATGCATGTGGCCTGCGTTGCACAGGTTG
TGACTGTGCTTATTTTTAATCCCAGACCACTAGAGGTGGTGAATACAAGG
CAAGCCGCTCGATGGGGAGATGAGACACCAAGATGACGATGACATACTGA
AAGCCCATCTTGCTTGACCTTGCGAACGCGACCTTGCCTTAAGACCTCAA
TAACTTGACACTGTCAAGCCATTTTTCTCTTGATTGGCGTACTCGACAAC
TACGCAAAAATGCTATACACTCGATAGACAGACAAAAACATGAATATGTC
TGCCGGGAGTGCTCACATTGAGCGAGGCTGCGCACGCCGATTTGGTCTCG
AAAGCAGCGAAGAACCGGACTCCCCCTTGCGTTCGTCGTACCTGACAACG
CTGCACGGGACACAAAACCTCAAACAGACGGTTGTCTGCTGCACAACTTT
AGAGAGCGCGCGCCTACAAGCTCGTAGTTTATACCAGCGCTACGGTGGCG
CAGGGACCGAGCCCAGGCCTTGATTCTTGTCAAAGCAGAACGCAGTTGAC
GCTAATGCGTTTTTCACAGCGCGTCAGTCGACGACGTGTAGCGCTGTACT
TGCTTTGCCATTTCATAGACTGCGGAGTCACCCTTGACAGTCTAATCCAT
CACACTCACACACATATTCATACAACATAGCACAAGGAGGTGCGTGGATT
ATTGGCTTGGTGGAACGCCTGGCCGTGGACGGAGAGAGGAG

protein sequence of jgi.p|Nanoce1779_2|580257

>mRNA_2409-protein ID=mRNA_2409-protein|Name=jgi.p|Nanoce1779_2|580257|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MCMLVCLELALLGTGSSSHPYSLFGQADGPFLKTTRAHIISFDSTLSSFD
ALPWPFPGHQPYPSPPPSPLYPPRNVYAQGVQGWGGFLRGKAHSAGGGSA
AALAWTHACGLRCTGCDCAYF*

mRNA from alignment at scaffold_5:267701..268841+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2409 ID=mRNA_2409|Name=jgi.p|Nanoce1779_2|580257|organism=Nannochloropsis oceanica|type=mRNA|length=1141bp|location=Sequence derived from alignment at scaffold_5:267701..268841+ (Nannochloropsis oceanica)
GTCTGTCTGTGGGCATTTCAATAGCTGGAGGGCATGCAAGACTACAACCA
CCCTACAAATATGGCCCTGCCAGTAGGTAGGGGTAGACAACCGTTTGTTC
TATATGTGCATGCTGGTGTGTTTGGAGCTGGCTCTACTGGGCACGGGATC
TTCATCGCATCCCTATTCCTTATTTGGTCAGGCAGACGGACCTTTCTTGA
AAACAACGCGGGCACACATAATTTCGTTTGATTCCACACTTTCTAGTTTT
GACGCCCTTCCTTGGCCCTTTCCTGGTCATCAGCCGTATCCATCTCCGCC
CCCGTCACCCCTCTACCCCCCCCGTAATGTCTACGCTCAAGGAGTACAGG
GGTGGGGAGGTTTTTTAAGGGGAAAGGCGCACTCGGCAGGAGGCGGCAGC
GCAGCTGCTCTGGCATGGACACATGCATGTGGCCTGCGTTGCACAGGTTG
TGACTGTGCTTATTTTTAATCCCAGACCACTAGAGGTGGTGAATACAAGG
CAAGCCGCTCGATGGGGAGATGAGACACCAAGATGACGATGACATACTGA
AAGCCCATCTTGCTTGACCTTGCGAACGCGACCTTGCCTTAAGACCTCAA
TAACTTGACACTGTCAAGCCATTTTTCTCTTGATTGGCGTACTCGACAAC
TACGCAAAAATGCTATACACTCGATAGACAGACAAAAACATGAATATGTC
TGCCGGGAGTGCTCACATTGAGCGAGGCTGCGCACGCCGATTTGGTCTCG
AAAGCAGCGAAGAACCGGACTCCCCCTTGCGTTCGTCGTACCTGACAACG
CTGCACGGGACACAAAACCTCAAACAGACGGTTGTCTGCTGCACAACTTT
AGAGAGCGCGCGCCTACAAGCTCGTAGTTTATACCAGCGCTACGGTGGCG
CAGGGACCGAGCCCAGGCCTTGATTCTTGTCAAAGCAGAACGCAGTTGAC
GCTAATGCGTTTTTCACAGCGCGTCAGTCGACGACGTGTAGCGCTGTACT
TGCTTTGCCATTTCATAGACTGCGGAGTCACCCTTGACAGTCTAATCCAT
CACACTCACACACATATTCATACAACATAGCACAAGGAGGTGCGTGGATT
ATTGGCTTGGTGGAACGCCTGGCCGTGGACGGAGAGAGGAG

Coding sequence (CDS) from alignment at scaffold_5:267701..268841+

>mRNA_2409 ID=mRNA_2409|Name=jgi.p|Nanoce1779_2|580257|organism=Nannochloropsis oceanica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_5:267701..268841+ (Nannochloropsis oceanica)
ATGTGCATGCTGGTGTGTTTGGAGCTGGCTCTACTGGGCACGGGATCTTC
ATCGCATCCCTATTCCTTATTTGGTCAGGCAGACGGACCTTTCTTGAAAA
CAACGCGGGCACACATAATTTCGTTTGATTCCACACTTTCTAGTTTTGAC
GCCCTTCCTTGGCCCTTTCCTGGTCATCAGCCGTATCCATCTCCGCCCCC
GTCACCCCTCTACCCCCCCCGTAATGTCTACGCTCAAGGAGTACAGGGGT
GGGGAGGTTTTTTAAGGGGAAAGGCGCACTCGGCAGGAGGCGGCAGCGCA
GCTGCTCTGGCATGGACACATGCATGTGGCCTGCGTTGCACAGGTTGTGA
CTGTGCTTATTTTTAA

Synonyms

Publications