jgi.p|Nanoce1779_2|661567, mRNA_2407 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|661567
Unique Name	mRNA_2407
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1749
Alignment location	scaffold_5:263136..264884 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	661653
Track	FilteredModels2
ProteinId	661567

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:263136..264884 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|661567	gene_2407	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|661567	mRNA_2407-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2407	CDS_2407	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:263136..264884+
coding sequence from alignment at scaffold_5:263136..264884+

mRNA sequence

>mRNA_2407 ID=mRNA_2407|Name=jgi.p|Nanoce1779_2|661567|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp
CGCCCACCCACACCACTTCTACAGCAGGGCTTCTCGCAACCTCTTCACAT
TTCCCTCCGCATCGCCTCTACACCATCCGTGCACAAAGTCATGGCACGCG
GCCGCAAAAAGGGCAAGCACTCCTGGGATGGCTACTCCAAGAAAGACCAG
GCCAGCAAATGGCTCAGAACCCTTGCCGAGGCACATTATCAATTACGTCG
CTCAGGCAGCACCAGCGCTGCAGTCACCGCAGCCGGCACCAACAAGGCCA
GTAATGTCATTAGCAAAAACGCGAATGGCGGGTGGTTGCAGCAGTTCCGT
CTGCGCCACCAACGAGGAGGAATCAACGGCAGCGGGTCCGGGGCAGTGGT
GGCACGGGTGAATTCTCAAGCTGCTGCACGCTTTGTTGAGTCTTACTTGA
GAGGTCCGCCCTCTGCGGCGGCAGCAAATTTGACGGCTCCGGTAGCAGCA
CGAAGTAGAAAGAAGGATGGTGTAGGGTGTAGGAGGGAGGGGGATGAGGA
TGGGGGGGATATTTCTCTGGAGGATTGGTTGTCCTGGGAAATGAGGAGAG
GTGTTAAATTTGATGAGGCGGAGGAAATGGGGGATACAGGAAAGGAAGGG
GGAAAGGACCAGGAGGCTTCGCCCATCGTGAGCCTTACCGAGCTATGTTG
CCGTCAGGTGGGTGCGGATCTGCCTCTCTACGGTGCTGCGTGTGCTTTGG
ATAAGGAGGTGGGAGAGGCTCAAGTGAGGAGAGAACATGAAGCGGTAGCA
GCAGGAGCGCCGGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
GGAGGAGGAGGAGGAGGAGGAAGTGGAGGGGGAAGAAAGGGGAGAAGAAG
AAGAAGAGGGAGGAAGTGACGATGACAGCGGCGAGAGCACTACAGCTGAC
GCCATTCAAGGAATCTTCAGCCTTCTCCCCTCCCGGTGCTTGGCGCGTAT
TTCCCTCGCAGCGTCTCTTTCCCACGCCATCACGGATGCTTCCCTCCCCT
TGCTCTGCCAACCCTCCGCCCTCTACCTTGTCCTCGTCGGGAGTTTCACG
GACTCTGGGCTTGCTCGAGCCATGTTTCCGCGGCTTCGACAGCTTTCCCC
CACTGCCTCTTGGGAGGACGCGACGCAGGAACCCCAACTCGGTGGATGTG
CCATTCTTCAATCCCTCCTTGTGAGCAGTCCTGGGTTGACCCCTCTGTGC
GTGGAAGGGATCGGGAGGCATTTGACCACGGTGCGGCACTTGGCCGTTCC
CCGGTGTTTTAATGCGGACGTCACCATGACAGCAAAGGAGGTGTTGTCGA
CCGTAGGAGCGTCCTGTGGGTACGTGCAAGAACTTGACCTCCGGGGCTGC
CACTGGCTCACGGAAAAGAGTCTGATCGGCTGGGTGAGTGTTGGAGGGAA
GGCGGCGACTGCGACTGCTGGGATTGTGGGCTTGGGAGGAATGGATGGAT
TGGAGAAGGAAGAGGGCGAGGGGATGGGGGTGGTGGTGGGTGGGAGGGAG
GGAAGGAGGGAGGGAAGGAGCAGGGGGATGGCAAGGATGATGGAGTTCGA
TGGACCGACGCCTGATAGAGGCCCGCCTGTAGCTTTGCGTCGACTTTACC
TGGATAAGCGGCTGGCCAAAGCGGAGGCGGTGCGAAGTACGTTTGCGGAG
GTGGGCGGTGATTGTGAGAGTAGGAGTGGGGGCAAAGAGACCAAGGGCGT
GGTTAAGGTGTGTGTTTGGGAGGCGAAGGGGAAGAGGGCATTAGACTGA

protein sequence of jgi.p|Nanoce1779_2|661567

>mRNA_2407-protein ID=mRNA_2407-protein|Name=jgi.p|Nanoce1779_2|661567|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp
MARGRKKGKHSWDGYSKKDQASKWLRTLAEAHYQLRRSGSTSAAVTAAGT
NKASNVISKNANGGWLQQFRLRHQRGGINGSGSGAVVARVNSQAAARFVE
SYLRGPPSAAAANLTAPVAARSRKKDGVGCRREGDEDGGDISLEDWLSWE
MRRGVKFDEAEEMGDTGKEGGKDQEASPIVSLTELCCRQVGADLPLYGAA
CALDKEVGEAQVRREHEAVAAGAPAEEEEEEEEEEEEEEEEEEEVEGEER
GEEEEEGGSDDDSGESTTADAIQGIFSLLPSRCLARISLAASLSHAITDA
SLPLLCQPSALYLVLVGSFTDSGLARAMFPRLRQLSPTASWEDATQEPQL
GGCAILQSLLVSSPGLTPLCVEGIGRHLTTVRHLAVPRCFNADVTMTAKE
VLSTVGASCGYVQELDLRGCHWLTEKSLIGWVSVGGKAATATAGIVGLGG
MDGLEKEEGEGMGVVVGGREGRREGRSRGMARMMEFDGPTPDRGPPVALR
RLYLDKRLAKAEAVRSTFAEVGGDCESRSGGKETKGVVKVCVWEAKGKRA
LD*

mRNA from alignment at scaffold_5:263136..264884+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2407 ID=mRNA_2407|Name=jgi.p|Nanoce1779_2|661567|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp|location=Sequence derived from alignment at scaffold_5:263136..264884+ (Nannochloropsis oceanica)
CGCCCACCCACACCACTTCTACAGCAGGGCTTCTCGCAACCTCTTCACAT
TTCCCTCCGCATCGCCTCTACACCATCCGTGCACAAAGTCATGGCACGCG
GCCGCAAAAAGGGCAAGCACTCCTGGGATGGCTACTCCAAGAAAGACCAG
GCCAGCAAATGGCTCAGAACCCTTGCCGAGGCACATTATCAATTACGTCG
CTCAGGCAGCACCAGCGCTGCAGTCACCGCAGCCGGCACCAACAAGGCCA
GTAATGTCATTAGCAAAAACGCGAATGGCGGGTGGTTGCAGCAGTTCCGT
CTGCGCCACCAACGAGGAGGAATCAACGGCAGCGGGTCCGGGGCAGTGGT
GGCACGGGTGAATTCTCAAGCTGCTGCACGCTTTGTTGAGTCTTACTTGA
GAGGTCCGCCCTCTGCGGCGGCAGCAAATTTGACGGCTCCGGTAGCAGCA
CGAAGTAGAAAGAAGGATGGTGTAGGGTGTAGGAGGGAGGGGGATGAGGA
TGGGGGGGATATTTCTCTGGAGGATTGGTTGTCCTGGGAAATGAGGAGAG
GTGTTAAATTTGATGAGGCGGAGGAAATGGGGGATACAGGAAAGGAAGGG
GGAAAGGACCAGGAGGCTTCGCCCATCGTGAGCCTTACCGAGCTATGTTG
CCGTCAGGTGGGTGCGGATCTGCCTCTCTACGGTGCTGCGTGTGCTTTGG
ATAAGGAGGTGGGAGAGGCTCAAGTGAGGAGAGAACATGAAGCGGTAGCA
GCAGGAGCGCCGGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
GGAGGAGGAGGAGGAGGAGGAAGTGGAGGGGGAAGAAAGGGGAGAAGAAG
AAGAAGAGGGAGGAAGTGACGATGACAGCGGCGAGAGCACTACAGCTGAC
GCCATTCAAGGAATCTTCAGCCTTCTCCCCTCCCGGTGCTTGGCGCGTAT
TTCCCTCGCAGCGTCTCTTTCCCACGCCATCACGGATGCTTCCCTCCCCT
TGCTCTGCCAACCCTCCGCCCTCTACCTTGTCCTCGTCGGGAGTTTCACG
GACTCTGGGCTTGCTCGAGCCATGTTTCCGCGGCTTCGACAGCTTTCCCC
CACTGCCTCTTGGGAGGACGCGACGCAGGAACCCCAACTCGGTGGATGTG
CCATTCTTCAATCCCTCCTTGTGAGCAGTCCTGGGTTGACCCCTCTGTGC
GTGGAAGGGATCGGGAGGCATTTGACCACGGTGCGGCACTTGGCCGTTCC
CCGGTGTTTTAATGCGGACGTCACCATGACAGCAAAGGAGGTGTTGTCGA
CCGTAGGAGCGTCCTGTGGGTACGTGCAAGAACTTGACCTCCGGGGCTGC
CACTGGCTCACGGAAAAGAGTCTGATCGGCTGGGTGAGTGTTGGAGGGAA
GGCGGCGACTGCGACTGCTGGGATTGTGGGCTTGGGAGGAATGGATGGAT
TGGAGAAGGAAGAGGGCGAGGGGATGGGGGTGGTGGTGGGTGGGAGGGAG
GGAAGGAGGGAGGGAAGGAGCAGGGGGATGGCAAGGATGATGGAGTTCGA
TGGACCGACGCCTGATAGAGGCCCGCCTGTAGCTTTGCGTCGACTTTACC
TGGATAAGCGGCTGGCCAAAGCGGAGGCGGTGCGAAGTACGTTTGCGGAG
GTGGGCGGTGATTGTGAGAGTAGGAGTGGGGGCAAAGAGACCAAGGGCGT
GGTTAAGGTGTGTGTTTGGGAGGCGAAGGGGAAGAGGGCATTAGACTGA

Coding sequence (CDS) from alignment at scaffold_5:263136..264884+

>mRNA_2407 ID=mRNA_2407|Name=jgi.p|Nanoce1779_2|661567|organism=Nannochloropsis oceanica|type=CDS|length=1659bp|location=Sequence derived from alignment at scaffold_5:263136..264884+ (Nannochloropsis oceanica)
ATGGCACGCGGCCGCAAAAAGGGCAAGCACTCCTGGGATGGCTACTCCAA
GAAAGACCAGGCCAGCAAATGGCTCAGAACCCTTGCCGAGGCACATTATC
AATTACGTCGCTCAGGCAGCACCAGCGCTGCAGTCACCGCAGCCGGCACC
AACAAGGCCAGTAATGTCATTAGCAAAAACGCGAATGGCGGGTGGTTGCA
GCAGTTCCGTCTGCGCCACCAACGAGGAGGAATCAACGGCAGCGGGTCCG
GGGCAGTGGTGGCACGGGTGAATTCTCAAGCTGCTGCACGCTTTGTTGAG
TCTTACTTGAGAGGTCCGCCCTCTGCGGCGGCAGCAAATTTGACGGCTCC
GGTAGCAGCACGAAGTAGAAAGAAGGATGGTGTAGGGTGTAGGAGGGAGG
GGGATGAGGATGGGGGGGATATTTCTCTGGAGGATTGGTTGTCCTGGGAA
ATGAGGAGAGGTGTTAAATTTGATGAGGCGGAGGAAATGGGGGATACAGG
AAAGGAAGGGGGAAAGGACCAGGAGGCTTCGCCCATCGTGAGCCTTACCG
AGCTATGTTGCCGTCAGGTGGGTGCGGATCTGCCTCTCTACGGTGCTGCG
TGTGCTTTGGATAAGGAGGTGGGAGAGGCTCAAGTGAGGAGAGAACATGA
AGCGGTAGCAGCAGGAGCGCCGGCAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGTGGAGGGGGAAGAAAGG
GGAGAAGAAGAAGAAGAGGGAGGAAGTGACGATGACAGCGGCGAGAGCAC
TACAGCTGACGCCATTCAAGGAATCTTCAGCCTTCTCCCCTCCCGGTGCT
TGGCGCGTATTTCCCTCGCAGCGTCTCTTTCCCACGCCATCACGGATGCT
TCCCTCCCCTTGCTCTGCCAACCCTCCGCCCTCTACCTTGTCCTCGTCGG
GAGTTTCACGGACTCTGGGCTTGCTCGAGCCATGTTTCCGCGGCTTCGAC
AGCTTTCCCCCACTGCCTCTTGGGAGGACGCGACGCAGGAACCCCAACTC
GGTGGATGTGCCATTCTTCAATCCCTCCTTGTGAGCAGTCCTGGGTTGAC
CCCTCTGTGCGTGGAAGGGATCGGGAGGCATTTGACCACGGTGCGGCACT
TGGCCGTTCCCCGGTGTTTTAATGCGGACGTCACCATGACAGCAAAGGAG
GTGTTGTCGACCGTAGGAGCGTCCTGTGGGTACGTGCAAGAACTTGACCT
CCGGGGCTGCCACTGGCTCACGGAAAAGAGTCTGATCGGCTGGGTGAGTG
TTGGAGGGAAGGCGGCGACTGCGACTGCTGGGATTGTGGGCTTGGGAGGA
ATGGATGGATTGGAGAAGGAAGAGGGCGAGGGGATGGGGGTGGTGGTGGG
TGGGAGGGAGGGAAGGAGGGAGGGAAGGAGCAGGGGGATGGCAAGGATGA
TGGAGTTCGATGGACCGACGCCTGATAGAGGCCCGCCTGTAGCTTTGCGT
CGACTTTACCTGGATAAGCGGCTGGCCAAAGCGGAGGCGGTGCGAAGTAC
GTTTGCGGAGGTGGGCGGTGATTGTGAGAGTAGGAGTGGGGGCAAAGAGA
CCAAGGGCGTGGTTAAGGTGTGTGTTTGGGAGGCGAAGGGGAAGAGGGCA
TTAGACTGA

Synonyms

Publications