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Properties
| Property Name | Value |
|---|
| TranscriptId | 625032 |
| Track | FilteredModels2 |
| ProteinId | 624946 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:254815..256540 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2403 ID=mRNA_2403|Name=jgi.p|Nanoce1779_2|624946|organism=Nannochloropsis oceanica|type=mRNA|length=1165bp
ACAGCCACATCATGTTTGGGGCAAGCAGCAGTGGGCAGACTAGCAAGGGT
CTCGCGGCTGCTCGGGCACATCAACACAAGGTTCAACCTTGGGTGGAGAA
GTACCGTCCCCAGGGCGTCGATGACATTGCCCACCAAGACGAAGTGGTGA
AAACCCTCAAAAACGCCATCCAAACAGGCACGTTGCCGCATCTCCTCTTT
TATGGCCCTCCAGGAACAGGCAAGACATCGACTATTCTGGCCGTGGCTCG
CTCCTTGTTCGGCCCCGAGTACCGCTCGCGGATTCTGGAATTGAATGCGT
CGGACGAACGAGGGATTAAGGTGGTTAGGGAGAAGGTGAAACAATTTGCC
CAATTTACCGTGACGGGTTTGGAGAAGACGGCGGGCTACCCGTGCCCCCC
CTTCAAGATTATTATTCTGGACGAGGCAGACACGATGACCACGGAGGCTC
AGGCAGCTCTAAGGCGGACGATGGAGACGTACTCCAAAATCACCCGCTTC
TGCCTCGTGTGCAACTACGTCACGCGCATCATCGAACCTCTCGCCTCCCG
TTGTGCCAAATTTCGTTTCCGTCCCTTGCCGCGCGAGGTGATGCAGACAC
AACTCCTCTCCATCGGGACATCAGAGGGCGCCTCCGTATCCGAGCAGATG
ATGGAAGCTATCTTGACAGTGGCGGACGGGGACATGCGTAAGGCCGTGAC
CACACTACAAAGCGCTCACCAGTTTTATGGCCAAAGTACCACCATTACAC
CCGATGCCATTCGAGAGATGAGTGGGGGAGTGCCTGATGCCGTCGTATTT
GGGCTGTGGGAGGCGATTCGTATGCAGGCCTTTGATAATTTGAAGGCTCA
GTGCGAGGAGGTGGATATGGGAGGGTTTCCTACCATGGCGGTCTTGGGGC
GATTGTTTGACCTCGTGGTGGAGGATGAGGAGGAGGGAGGGAATGAGGGG
GTGAAGGACAGCGAGAAGGCGGTAGTGGCGGCGGGGATAGCACGGGCAGA
GAAGATGATAATCGATGGAGCTAGTGAGAGCTTGCAGTTGCTGGATGTGT
GTGCCCTGATGATGAGGACATTTGGGGGCAGGAATGGAAGGAGAGAGGGG
GGATTGAAATACGGGGGTGCGGACGAGACGGGCGCAGAGGCGGGGACGCC
GATGGTGTTGTAAGG back to topprotein sequence of jgi.p|Nanoce1779_2|624946 >mRNA_2403-protein ID=mRNA_2403-protein|Name=jgi.p|Nanoce1779_2|624946|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MFGASSSGQTSKGLAAARAHQHKVQPWVEKYRPQGVDDIAHQDEVVKTLK
NAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPEYRSRILELNASDER
GIKVVREKVKQFAQFTVTGLEKTAGYPCPPFKIIILDEADTMTTEAQAAL
RRTMETYSKITRFCLVCNYVTRIIEPLASRCAKFRFRPLPREVMQTQLLS
IGTSEGASVSEQMMEAILTVADGDMRKAVTTLQSAHQFYGQSTTITPDAI
REMSGGVPDAVVFGLWEAIRMQAFDNLKAQCEEVDMGGFPTMAVLGRLFD
LVVEDEEEGGNEGVKDSEKAVVAAGIARAEKMIIDGASESLQLLDVCALM
MRTFGGRNGRREGGLKYGGADETGAEAGTPMVL* back to topmRNA from alignment at scaffold_5:254815..256540+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2403 ID=mRNA_2403|Name=jgi.p|Nanoce1779_2|624946|organism=Nannochloropsis oceanica|type=mRNA|length=1726bp|location=Sequence derived from alignment at scaffold_5:254815..256540+ (Nannochloropsis oceanica)
ACAGCCACATCATGTTTGGGGCAAGCAGCAGTGGGCAGACTAGCAAGGGT
CTCGCGGCTGCTCGGGCACATCAACACAAGGCAAGTAACATGAGCGCCTA
CAGCCCACCTTTCCTCCCTCCTGTCCCCCCCATCAATACCACATTTTCTA
CAGCGATTCTCCATGTGCTGCGTTGTCCATGTGCCTGCGATGCCAAGCAA
TTTTTCTCCCATTGCATCTTTTATGTCATGCTCTGGACCGCTGATCTGAT
GTGCTTAAGTATCTTGCGCTGACTATTATATCCCTTCTCTACCTCCTTTC
CTTCACAGGTTCAACCTTGGGTGGAGAAGTACCGTCCCCAGGGCGTCGAT
GACATTGCCCACCAAGACGAAGTGGTGAAAACCCTCAAAAACGCCATCCA
AACAGGCACGTTGCCGCATCTCCTCTTTTATGGCCCTCCAGGAACAGGCA
AGACATCGACTATTCTGGCCGTGGCTCGCTCCTTGTTCGGCCCCGAGTAC
CGCTCGCGGATTCTGGAATTGAATGCGTCGGACGAACGAGGGATTAAGGT
GGTTAGGGAGAAGGTGAAACAATTTGCCCAATTTACCGTGACGGGTTTGG
AGAAGACGGCGGGCTACCCGTGCCCCCCCTTCAAGATTATTATTCTGGAC
GAGGCAGACACGATGACCACGGAGGCTCAGGCAGCTCTAAGGCGGACGAT
GGAGGTGAGATGGGGAGGTTAAAAGAGAGAATGGAGGGGAGGAACACAGA
TAAGATGCATCTAGGAATGTCATATGGCTGTCTTGAGTCCCTGACTGACT
CCTGTTTCCTCTGCCTCCTTCCCTCCCTCCCCCCCTTCTTCCTCCATCTC
CTCAGACGTACTCCAAAATCACCCGCTTCTGCCTCGTGTGCAACTACGTC
ACGCGCATCATCGAACCTCTCGCCTCCCGTTGTGCCAAATTTCGTTTCCG
TCCCTTGCCGCGCGAGGTGATGCAGACACAACTCCTCTCCATCGGGACAT
CAGAGGGCGCCTCCGTATCCGAGCAGATGATGGAAGCTATCTTGACAGTG
GCGGACGGGTGCGTGCTACCCTTCCTTCTTCCCTTCCCTCCGTCCCTCCC
TCCCACCTTCTTCGTGCTTCCCCTCATTCCCACCTTCTTGGTCACATGAA
TAAGAGGCAGCACGTCCAAGTTAATCTTCCTTCATTCTTAGACTCTCTCC
CTCCCTCCCCCCCTCCCCTCCGTCACCCCCACGCCCACAGGGACATGCGT
AAGGCCGTGACCACACTACAAAGCGCTCACCAGTTTTATGGCCAAAGTAC
CACCATTACACCCGATGCCATTCGAGAGATGAGTGGGGGAGTGCCTGATG
CCGTCGTATTTGGGCTGTGGGAGGCGATTCGTATGCAGGCCTTTGATAAT
TTGAAGGCTCAGTGCGAGGAGGTGGATATGGGAGGGTTTCCTACCATGGC
GGTCTTGGGGCGATTGTTTGACCTCGTGGTGGAGGATGAGGAGGAGGGAG
GGAATGAGGGGGTGAAGGACAGCGAGAAGGCGGTAGTGGCGGCGGGGATA
GCACGGGCAGAGAAGATGATAATCGATGGAGCTAGTGAGAGCTTGCAGTT
GCTGGATGTGTGTGCCCTGATGATGAGGACATTTGGGGGCAGGAATGGAA
GGAGAGAGGGGGGATTGAAATACGGGGGTGCGGACGAGACGGGCGCAGAG
GCGGGGACGCCGATGGTGTTGTAAGG back to topCoding sequence (CDS) from alignment at scaffold_5:254815..256540+ >mRNA_2403 ID=mRNA_2403|Name=jgi.p|Nanoce1779_2|624946|organism=Nannochloropsis oceanica|type=CDS|length=4608bp|location=Sequence derived from alignment at scaffold_5:254815..256540+ (Nannochloropsis oceanica)
ATGTTTGGGGCAAGCAGCAGTGGGCAGACTAGCAAGGGTCTCGCGGCTGC
TCGGGCACATCAACACAAGGTTCAACCTTGGGTGGAGAAGTACCGTCCCC
AGGGCGTCGATGACATTGCCCACCAAGACGAAGTGGTGAAAACCCTCAAA
AACGCCATCCAAACAGGCACGTTGCCGCATCTCCTCTTTTATGGCCCTCC
AGGAACAGGCAAGACATCGACTATTCTGGCCGTGGCTCGCTCCTTGTTCG
GCCCCGAGTACCGCTCGCGGATTCTGGAATTGAATGCGTCGGACGAACGA
GGGATTAAGGTGGTTAGGGAGAAGGTGAAACAATTTGCCCAATTTACCGT
GACGGGTTTGGAGAAGACGGCGGGCTACCCGTGCCCCCCCTTCAAGATTA
TTATTCTGGACGAGGCAGACACGATGACCACGGAGGCTCAGGCAGCTCTA
AGGCGGACGATGGAGACGTACTCCAAAATCACCCGCTTCTGCCTCGTGTG
CAACTACGTCACGCGCATCATCGAACCTCTCGCCTCCCGTTGTGCCAAAT
TTCGTTTCCGTCCCTTGCCGCGCGAGGTGATGCAGACACAACTCCTCTCC
ATCGGGACATCAGAGGGCGCCTCCGTATCCGAGCAGATGATGGAAGCTAT
CTTGACAGTGGCGGACGGGGACATGCGTAAGGCCGTGACCACACTACAAA
GCGCTCACCAGTTTTATGGCCAAAGTACCACCATTACACCCGATGCCATT
CGAGAGATGAGTGGGGGAGTGCCTGATGCCGTCGTATTTGGGCTGTGGGA
GGCGATTCGTATGCAGGCCTTTGATAATTTGAAGGCTCAGTGCGAGGAGG
TGGATATGGGAGGGTTTCCTACCATGGCGGTCTTGGGGCGATTGTTTGAC
CTCGTGGTGGAGGATGAGGAGGAGGGAGGGAATGAGGGGGTGAAGGACAG
CGAGAAGGCGGTAGTGGCGGCGGGGATAGCACGGGCAGAGAAGATGATAA
TCGATGGAGCTAGTGAGAGCTTGCAGTTGCTGGATGTGTGTGCCCTGATG
ATGAGGACATTTGGGGGCAGGAATGGAAGGAGAGAGGGGGGATTGAAATA
CGGGGGTGCGGACGAGACGGGCGCAGAGGCGGGGACGCCGATGGTGTTGT
AAATGTTTGGGGCAAGCAGCAGTGGGCAGACTAGCAAGGGTCTCGCGGCT
GCTCGGGCACATCAACACAAGGTTCAACCTTGGGTGGAGAAGTACCGTCC
CCAGGGCGTCGATGACATTGCCCACCAAGACGAAGTGGTGAAAACCCTCA
AAAACGCCATCCAAACAGGCACGTTGCCGCATCTCCTCTTTTATGGCCCT
CCAGGAACAGGCAAGACATCGACTATTCTGGCCGTGGCTCGCTCCTTGTT
CGGCCCCGAGTACCGCTCGCGGATTCTGGAATTGAATGCGTCGGACGAAC
GAGGGATTAAGGTGGTTAGGGAGAAGGTGAAACAATTTGCCCAATTTACC
GTGACGGGTTTGGAGAAGACGGCGGGCTACCCGTGCCCCCCCTTCAAGAT
TATTATTCTGGACGAGGCAGACACGATGACCACGGAGGCTCAGGCAGCTC
TAAGGCGGACGATGGAGACGTACTCCAAAATCACCCGCTTCTGCCTCGTG
TGCAACTACGTCACGCGCATCATCGAACCTCTCGCCTCCCGTTGTGCCAA
ATTTCGTTTCCGTCCCTTGCCGCGCGAGGTGATGCAGACACAACTCCTCT
CCATCGGGACATCAGAGGGCGCCTCCGTATCCGAGCAGATGATGGAAGCT
ATCTTGACAGTGGCGGACGGGGACATGCGTAAGGCCGTGACCACACTACA
AAGCGCTCACCAGTTTTATGGCCAAAGTACCACCATTACACCCGATGCCA
TTCGAGAGATGAGTGGGGGAGTGCCTGATGCCGTCGTATTTGGGCTGTGG
GAGGCGATTCGTATGCAGGCCTTTGATAATTTGAAGGCTCAGTGCGAGGA
GGTGGATATGGGAGGGTTTCCTACCATGGCGGTCTTGGGGCGATTGTTTG
ACCTCGTGGTGGAGGATGAGGAGGAGGGAGGGAATGAGGGGGTGAAGGAC
AGCGAGAAGGCGGTAGTGGCGGCGGGGATAGCACGGGCAGAGAAGATGAT
AATCGATGGAGCTAGTGAGAGCTTGCAGTTGCTGGATGTGTGTGCCCTGA
TGATGAGGACATTTGGGGGCAGGAATGGAAGGAGAGAGGGGGGATTGAAA
TACGGGGGTGCGGACGAGACGGGCGCAGAGGCGGGGACGCCGATGGTGTT
GTAAATGTTTGGGGCAAGCAGCAGTGGGCAGACTAGCAAGGGTCTCGCGG
CTGCTCGGGCACATCAACACAAGGTTCAACCTTGGGTGGAGAAGTACCGT
CCCCAGGGCGTCGATGACATTGCCCACCAAGACGAAGTGGTGAAAACCCT
CAAAAACGCCATCCAAACAGGCACGTTGCCGCATCTCCTCTTTTATGGCC
CTCCAGGAACAGGCAAGACATCGACTATTCTGGCCGTGGCTCGCTCCTTG
TTCGGCCCCGAGTACCGCTCGCGGATTCTGGAATTGAATGCGTCGGACGA
ACGAGGGATTAAGGTGGTTAGGGAGAAGGTGAAACAATTTGCCCAATTTA
CCGTGACGGGTTTGGAGAAGACGGCGGGCTACCCGTGCCCCCCCTTCAAG
ATTATTATTCTGGACGAGGCAGACACGATGACCACGGAGGCTCAGGCAGC
TCTAAGGCGGACGATGGAGACGTACTCCAAAATCACCCGCTTCTGCCTCG
TGTGCAACTACGTCACGCGCATCATCGAACCTCTCGCCTCCCGTTGTGCC
AAATTTCGTTTCCGTCCCTTGCCGCGCGAGGTGATGCAGACACAACTCCT
CTCCATCGGGACATCAGAGGGCGCCTCCGTATCCGAGCAGATGATGGAAG
CTATCTTGACAGTGGCGGACGGGGACATGCGTAAGGCCGTGACCACACTA
CAAAGCGCTCACCAGTTTTATGGCCAAAGTACCACCATTACACCCGATGC
CATTCGAGAGATGAGTGGGGGAGTGCCTGATGCCGTCGTATTTGGGCTGT
GGGAGGCGATTCGTATGCAGGCCTTTGATAATTTGAAGGCTCAGTGCGAG
GAGGTGGATATGGGAGGGTTTCCTACCATGGCGGTCTTGGGGCGATTGTT
TGACCTCGTGGTGGAGGATGAGGAGGAGGGAGGGAATGAGGGGGTGAAGG
ACAGCGAGAAGGCGGTAGTGGCGGCGGGGATAGCACGGGCAGAGAAGATG
ATAATCGATGGAGCTAGTGAGAGCTTGCAGTTGCTGGATGTGTGTGCCCT
GATGATGAGGACATTTGGGGGCAGGAATGGAAGGAGAGAGGGGGGATTGA
AATACGGGGGTGCGGACGAGACGGGCGCAGAGGCGGGGACGCCGATGGTG
TTGTAAATGTTTGGGGCAAGCAGCAGTGGGCAGACTAGCAAGGGTCTCGC
GGCTGCTCGGGCACATCAACACAAGGTTCAACCTTGGGTGGAGAAGTACC
GTCCCCAGGGCGTCGATGACATTGCCCACCAAGACGAAGTGGTGAAAACC
CTCAAAAACGCCATCCAAACAGGCACGTTGCCGCATCTCCTCTTTTATGG
CCCTCCAGGAACAGGCAAGACATCGACTATTCTGGCCGTGGCTCGCTCCT
TGTTCGGCCCCGAGTACCGCTCGCGGATTCTGGAATTGAATGCGTCGGAC
GAACGAGGGATTAAGGTGGTTAGGGAGAAGGTGAAACAATTTGCCCAATT
TACCGTGACGGGTTTGGAGAAGACGGCGGGCTACCCGTGCCCCCCCTTCA
AGATTATTATTCTGGACGAGGCAGACACGATGACCACGGAGGCTCAGGCA
GCTCTAAGGCGGACGATGGAGACGTACTCCAAAATCACCCGCTTCTGCCT
CGTGTGCAACTACGTCACGCGCATCATCGAACCTCTCGCCTCCCGTTGTG
CCAAATTTCGTTTCCGTCCCTTGCCGCGCGAGGTGATGCAGACACAACTC
CTCTCCATCGGGACATCAGAGGGCGCCTCCGTATCCGAGCAGATGATGGA
AGCTATCTTGACAGTGGCGGACGGGGACATGCGTAAGGCCGTGACCACAC
TACAAAGCGCTCACCAGTTTTATGGCCAAAGTACCACCATTACACCCGAT
GCCATTCGAGAGATGAGTGGGGGAGTGCCTGATGCCGTCGTATTTGGGCT
GTGGGAGGCGATTCGTATGCAGGCCTTTGATAATTTGAAGGCTCAGTGCG
AGGAGGTGGATATGGGAGGGTTTCCTACCATGGCGGTCTTGGGGCGATTG
TTTGACCTCGTGGTGGAGGATGAGGAGGAGGGAGGGAATGAGGGGGTGAA
GGACAGCGAGAAGGCGGTAGTGGCGGCGGGGATAGCACGGGCAGAGAAGA
TGATAATCGATGGAGCTAGTGAGAGCTTGCAGTTGCTGGATGTGTGTGCC
CTGATGATGAGGACATTTGGGGGCAGGAATGGAAGGAGAGAGGGGGGATT
GAAATACGGGGGTGCGGACGAGACGGGCGCAGAGGCGGGGACGCCGATGG
TGTTGTAA back to top
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