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Properties
| Property Name | Value |
|---|
| TranscriptId | 580321 |
| Track | FilteredModels2 |
| ProteinId | 580235 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:252138..254301 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2402 ID=mRNA_2402|Name=jgi.p|Nanoce1779_2|580235|organism=Nannochloropsis oceanica|type=mRNA|length=1558bp
ACAGTCCATGGCCGGATCACCTGCCACAGGAGATGCTGCTGTCGTTCACT
ACCGCACGAAGAAACAAGCCGCATCGTCCTCACGGTCCCCATCTCGAGGT
AAGCAGGCATGCGTAGCCTCCCCCCCCACCTCTTGTATAAGACCAGGTGG
AACATGAACACTTTCATCCGTTACTCGAATGCCTGGGATTAATGCCACGC
ATGCCTCAACGCGGAGATTGATTACATACGATTCTTCAGAACCCCCCAAA
GCTTAAGAATGTCAAATAGTGCCTCTTTTGATCACTTCATATCTGCATCC
TCCCTTGCCTGCGCTCCCTCCGCATACCAGACGGTATGCAGACCCGCAGC
AGCGCCAAGGCCACAAAACGGGAAGAGAACCACGCCCACACCCTCATCGA
CGAAGAAAATGAACTTAATAGACCCACCTCTCCCGTGGCGATCTCGGGCC
TGTATCTCTTCATTCTCGAATTTCTCACGATCGGTCTCGTCCTCTCGAAA
GCACTGCATACCAATGCCGGCAAGAAATTCGTTCGCGTTGCCCGAGAAGG
CTGCGACTTGGCCTGGGCTGACATGGAGGGAGACCACTCCACCATTGCCT
GTTGCTCCCACACTCCCTCCCTCCCTTCCTCACCCTCCCTTGGAAACGAT
GAGAGATGGGATGCGGCGTTGTGTGCTGCTGCTACTTCTGCGGGGACCAA
GCGGTTGACAAGTTCCCTTGCTGCCCTTCTTCCCTTCCTCACCTGGGGGT
TGAATTGCCTCTTTTTTGCAGCGACGTCATGGTGGAGGAGAAGGAGGAGG
GGGGGAAGGGAGGGCTGGGAGGAGGAAGAGAAGGCGGGAAGAGTGTGGAT
GGGACAATATAGACGGTTAGGGTTATATGCATTCGTGATCATGTTTCGGA
CGGGCGTGTTGTTGATGTGCTTGAATCGAGTGCAGGCATGGGTGCAAGCG
GAGGAGAGCGATGCGTGCTGGTACTCTGGATTGAGGCACGACGGGCGGTG
TCGAGAGCGGTTTGATTTCGCCGATCACGGCGTCTTGTTCCTGTCGCAAT
ATTTGGCCATCCAGACATTCGAAGTGCTGGCAGTGCTCAGAGAGGCCACA
TCTCTCCCCCATCTCCTCTTATGCATTACCACGGCCTGTCTTATCTCCCT
CATTTCTCTCGTCGGATTCTACGACACGGTCAGCTTCTTCCACACGCGGT
TGGAGAGTGTGGTGGGCGTTGTGTTGTCCTTCCTCACGGTCCAGCTACCC
CTCATGCTCATCGCCTCGGGTCGGCTCTCCCACCACCGGTACCTCCGCAT
CAGCCACTACATCAAAGTTTAAATCTGATGCAATCAAATTCTTGAACAAA
ACATACAGGGTTCGAAATGAGTTACTGAATTGCACTTATCGAGACTCCGG
TAAAGAGGAGGAAAAGGGTTTCTAAAGAGAGGCAAAATCCAACTTGTAAA
ATCAACAATACAATTTTCAGAGAGTACATTCTTATTAGTGGGGGGCTATA
ATTCCTTGATTTACCCGTTTTGTATTCCTCTTTTCTGTCCTTTGCGGCAA
AAGGCAGG back to topprotein sequence of jgi.p|Nanoce1779_2|580235 >mRNA_2402-protein ID=mRNA_2402-protein|Name=jgi.p|Nanoce1779_2|580235|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MQTRSSAKATKREENHAHTLIDEENELNRPTSPVAISGLYLFILEFLTIG
LVLSKALHTNAGKKFVRVAREGCDLAWADMEGDHSTIACCSHTPSLPSSP
SLGNDERWDAALCAAATSAGTKRLTSSLAALLPFLTWGLNCLFFAATSWW
RRRRRGGREGWEEEEKAGRVWMGQYRRLGLYAFVIMFRTGVLLMCLNRVQ
AWVQAEESDACWYSGLRHDGRCRERFDFADHGVLFLSQYLAIQTFEVLAV
LREATSLPHLLLCITTACLISLISLVGFYDTVSFFHTRLESVVGVVLSFL
TVQLPLMLIASGRLSHHRYLRISHYIKV* back to topmRNA from alignment at scaffold_5:252138..254301- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2402 ID=mRNA_2402|Name=jgi.p|Nanoce1779_2|580235|organism=Nannochloropsis oceanica|type=mRNA|length=2164bp|location=Sequence derived from alignment at scaffold_5:252138..254301- (Nannochloropsis oceanica)
ACAGTCCATGGCCGGATCACCTGCCACAGGAGATGCTGCTGTCGTTCACT
ACCGCACGAAGAAACAAGCCGCATCGTCCTCACGGTCCCCATCTCGAGGT
AAGCAGGCATGCGTAGCCTCCCCCCCCACCTCTTGTATAAGACCAGGTGG
AACATGAACACTTTCATCCGTTACTCGAATGCCTGGGATTAATGCCACGC
ATGCCTCAACGCGGAGATTGATTACATACGATTCTTCAGAACCCCCCAAA
GCTTAAGAATGTCAAATAGTGCCTCTTTTGATCACTTCATATCTGCATCC
TCCCTTGCCTGCGCTCCCTCCGCATACCAGACGGTATGCAGACCCGCAGC
AGCGCCAAGGCCACAAAACGGGAAGAGAACCACGCCCACACCCTCATCGA
CGAAGAAAATGAACTTAATAGACCCACCTCTCCCGTGGCGATCTCGGTAC
GGTTTTCGAAGAGGGGGGGGGGGGAGCTCGCCTGCCCTGTGTCTTCCATA
CTCACCCTCCCTCCCTTCGTCCCGTTCCTCAGGGCCTGTATCTCTTCATT
CTCGAATTTCTCACGATCGGTCTCGTCCTCTCGAAAGCACTGCATACCAA
TGCCGGCAAGAAATTCGTTCGCGTTGCCCGAGAAGGCTGCGACTTGGCCT
GGGCTGACATGGAGGGAGACCACTCCACCATTGCCTGTTGCTCCCACACT
CCCTCCCTCCCTTCCTCACCCTCCCTTGGAAACGATGAGAGATGGGATGC
GGCGTTGTGTGCTGCTGCTACTTCTGCGGGGACCAAGCGGTTGACAAGTT
CCCTTGCTGCCCTTCTTCCCTTCCTCACCTGGGGGTTGAATTGCCTCTTT
TTTGCAGCGACGTCATGGTGGAGGAGAAGGAGGAGGGGGGGAAGGGAGGG
CTGGGAGGAGGAAGAGAAGGCGGGAAGAGTGTGGATGGGACAATATAGAC
GGTTAGGGTTATATGCATTCGTGATCATGTTTCGGACGGGCGTGTTGTTG
ATGTGCTTGAATCGAGTGCAGGCATGGGTGCAAGGTGAGGAGGGGAAGGA
AAGGCGGAGGGGGGGGAGGACAGAGGGATAAGTTCTTGACTAAGGAGGTT
GGATGCTCATCTTTGTAGTATTTTGTCTCATATATATATATGTTTCCTAC
CTCATATTGTCCTTCCCCCTCTGCCTCCTTTCCCTCAGCGGAGGAGAGCG
ATGCGTGCTGGTACTCTGGATTGAGGCACGACGGGCGGTGTCGAGAGCGG
TTTGATTTCGCCGATCACGGCGTCTTGTTCCTGTCGCAATATTTGGCCAT
CCAGACATTCGAAGTGCTGGCAGTGCTCAGAGAGGTCAGGAAGTAGAGAG
GGAGGGAGGGAGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAGGTG
AGCGCCAGCGATTTAGGAATAAGGCTGTCAATGTGTACCTACACTCAAAA
TTGTCCCCTCCGTTTCCCATCCTTTCAAACAGGCCACATCTCTCCCCCAT
CTCCTCTTATGCATTACCACGGCCTGTCTTATCTCCCTCATTTCTCTCGT
CGGATTCTACGACACGGTCAGCTTCTTCCACACGCGGTTGGAGAGTGTGG
TGGGCGTTGTGTTGTGTAAGTTGAGGAGGGAGGGAGATTGTGTTGTGTAA
GTTGAGGAGGGAGGGAGATTGTGTTGTGCAAGTTGAGGAGGGAGGGAAAG
ATATTAGGCAGAGAAAGAGGAGGAATGGAGGGAGGATTGCTTTCTAGATC
AATCCCCTCGGTTTTGCTTGATTGCTTCGTTGGCGCATCGATCCCCCATT
CCTAAGTTATCGCCATCCAACATGCACCTACAGCCTTCCTCACGGTCCAG
CTACCCCTCATGCTCATCGCCTCGGGTCGGCTCTCCCACCACCGGTACCT
CCGCATCAGCCACTACATCAAAGTTTAAATCTGATGCAATCAAATTCTTG
AACAAAACATACAGGGTTCGAAATGAGTTACTGAATTGCACTTATCGAGA
CTCCGGTAAAGAGGAGGAAAAGGGTTTCTAAAGAGAGGCAAAATCCAACT
TGTAAAATCAACAATACAATTTTCAGAGAGTACATTCTTATTAGTGGGGG
GCTATAATTCCTTGATTTACCCGTTTTGTATTCCTCTTTTCTGTCCTTTG
CGGCAAAAGGCAGG back to topCoding sequence (CDS) from alignment at scaffold_5:252138..254301- >mRNA_2402 ID=mRNA_2402|Name=jgi.p|Nanoce1779_2|580235|organism=Nannochloropsis oceanica|type=CDS|length=4935bp|location=Sequence derived from alignment at scaffold_5:252138..254301- (Nannochloropsis oceanica)
CCTTCCTCACGGTCCAGCTACCCCTCATGCTCATCGCCTCGGGTCGGCTC
TCCCACCACCGGTACCTCCGCATCAGCCACTACATCAAAGTTTAAGCCAC
ATCTCTCCCCCATCTCCTCTTATGCATTACCACGGCCTGTCTTATCTCCC
TCATTTCTCTCGTCGGATTCTACGACACGGTCAGCTTCTTCCACACGCGG
TTGGAGAGTGTGGTGGGCGTTGTGTTGTCGGAGGAGAGCGATGCGTGCTG
GTACTCTGGATTGAGGCACGACGGGCGGTGTCGAGAGCGGTTTGATTTCG
CCGATCACGGCGTCTTGTTCCTGTCGCAATATTTGGCCATCCAGACATTC
GAAGTGCTGGCAGTGCTCAGAGAGGGCCTGTATCTCTTCATTCTCGAATT
TCTCACGATCGGTCTCGTCCTCTCGAAAGCACTGCATACCAATGCCGGCA
AGAAATTCGTTCGCGTTGCCCGAGAAGGCTGCGACTTGGCCTGGGCTGAC
ATGGAGGGAGACCACTCCACCATTGCCTGTTGCTCCCACACTCCCTCCCT
CCCTTCCTCACCCTCCCTTGGAAACGATGAGAGATGGGATGCGGCGTTGT
GTGCTGCTGCTACTTCTGCGGGGACCAAGCGGTTGACAAGTTCCCTTGCT
GCCCTTCTTCCCTTCCTCACCTGGGGGTTGAATTGCCTCTTTTTTGCAGC
GACGTCATGGTGGAGGAGAAGGAGGAGGGGGGGAAGGGAGGGCTGGGAGG
AGGAAGAGAAGGCGGGAAGAGTGTGGATGGGACAATATAGACGGTTAGGG
TTATATGCATTCGTGATCATGTTTCGGACGGGCGTGTTGTTGATGTGCTT
GAATCGAGTGCAGGCATGGGTGCAAGATGCAGACCCGCAGCAGCGCCAAG
GCCACAAAACGGGAAGAGAACCACGCCCACACCCTCATCGACGAAGAAAA
TGAACTTAATAGACCCACCTCTCCCGTGGCGATCTCGCCTTCCTCACGGT
CCAGCTACCCCTCATGCTCATCGCCTCGGGTCGGCTCTCCCACCACCGGT
ACCTCCGCATCAGCCACTACATCAAAGTTTAAGCCACATCTCTCCCCCAT
CTCCTCTTATGCATTACCACGGCCTGTCTTATCTCCCTCATTTCTCTCGT
CGGATTCTACGACACGGTCAGCTTCTTCCACACGCGGTTGGAGAGTGTGG
TGGGCGTTGTGTTGTCGGAGGAGAGCGATGCGTGCTGGTACTCTGGATTG
AGGCACGACGGGCGGTGTCGAGAGCGGTTTGATTTCGCCGATCACGGCGT
CTTGTTCCTGTCGCAATATTTGGCCATCCAGACATTCGAAGTGCTGGCAG
TGCTCAGAGAGGGCCTGTATCTCTTCATTCTCGAATTTCTCACGATCGGT
CTCGTCCTCTCGAAAGCACTGCATACCAATGCCGGCAAGAAATTCGTTCG
CGTTGCCCGAGAAGGCTGCGACTTGGCCTGGGCTGACATGGAGGGAGACC
ACTCCACCATTGCCTGTTGCTCCCACACTCCCTCCCTCCCTTCCTCACCC
TCCCTTGGAAACGATGAGAGATGGGATGCGGCGTTGTGTGCTGCTGCTAC
TTCTGCGGGGACCAAGCGGTTGACAAGTTCCCTTGCTGCCCTTCTTCCCT
TCCTCACCTGGGGGTTGAATTGCCTCTTTTTTGCAGCGACGTCATGGTGG
AGGAGAAGGAGGAGGGGGGGAAGGGAGGGCTGGGAGGAGGAAGAGAAGGC
GGGAAGAGTGTGGATGGGACAATATAGACGGTTAGGGTTATATGCATTCG
TGATCATGTTTCGGACGGGCGTGTTGTTGATGTGCTTGAATCGAGTGCAG
GCATGGGTGCAAGATGCAGACCCGCAGCAGCGCCAAGGCCACAAAACGGG
AAGAGAACCACGCCCACACCCTCATCGACGAAGAAAATGAACTTAATAGA
CCCACCTCTCCCGTGGCGATCTCGCCTTCCTCACGGTCCAGCTACCCCTC
ATGCTCATCGCCTCGGGTCGGCTCTCCCACCACCGGTACCTCCGCATCAG
CCACTACATCAAAGTTTAAGCCACATCTCTCCCCCATCTCCTCTTATGCA
TTACCACGGCCTGTCTTATCTCCCTCATTTCTCTCGTCGGATTCTACGAC
ACGGTCAGCTTCTTCCACACGCGGTTGGAGAGTGTGGTGGGCGTTGTGTT
GTCGGAGGAGAGCGATGCGTGCTGGTACTCTGGATTGAGGCACGACGGGC
GGTGTCGAGAGCGGTTTGATTTCGCCGATCACGGCGTCTTGTTCCTGTCG
CAATATTTGGCCATCCAGACATTCGAAGTGCTGGCAGTGCTCAGAGAGGG
CCTGTATCTCTTCATTCTCGAATTTCTCACGATCGGTCTCGTCCTCTCGA
AAGCACTGCATACCAATGCCGGCAAGAAATTCGTTCGCGTTGCCCGAGAA
GGCTGCGACTTGGCCTGGGCTGACATGGAGGGAGACCACTCCACCATTGC
CTGTTGCTCCCACACTCCCTCCCTCCCTTCCTCACCCTCCCTTGGAAACG
ATGAGAGATGGGATGCGGCGTTGTGTGCTGCTGCTACTTCTGCGGGGACC
AAGCGGTTGACAAGTTCCCTTGCTGCCCTTCTTCCCTTCCTCACCTGGGG
GTTGAATTGCCTCTTTTTTGCAGCGACGTCATGGTGGAGGAGAAGGAGGA
GGGGGGGAAGGGAGGGCTGGGAGGAGGAAGAGAAGGCGGGAAGAGTGTGG
ATGGGACAATATAGACGGTTAGGGTTATATGCATTCGTGATCATGTTTCG
GACGGGCGTGTTGTTGATGTGCTTGAATCGAGTGCAGGCATGGGTGCAAG
ATGCAGACCCGCAGCAGCGCCAAGGCCACAAAACGGGAAGAGAACCACGC
CCACACCCTCATCGACGAAGAAAATGAACTTAATAGACCCACCTCTCCCG
TGGCGATCTCGCCTTCCTCACGGTCCAGCTACCCCTCATGCTCATCGCCT
CGGGTCGGCTCTCCCACCACCGGTACCTCCGCATCAGCCACTACATCAAA
GTTTAAGCCACATCTCTCCCCCATCTCCTCTTATGCATTACCACGGCCTG
TCTTATCTCCCTCATTTCTCTCGTCGGATTCTACGACACGGTCAGCTTCT
TCCACACGCGGTTGGAGAGTGTGGTGGGCGTTGTGTTGTCGGAGGAGAGC
GATGCGTGCTGGTACTCTGGATTGAGGCACGACGGGCGGTGTCGAGAGCG
GTTTGATTTCGCCGATCACGGCGTCTTGTTCCTGTCGCAATATTTGGCCA
TCCAGACATTCGAAGTGCTGGCAGTGCTCAGAGAGGGCCTGTATCTCTTC
ATTCTCGAATTTCTCACGATCGGTCTCGTCCTCTCGAAAGCACTGCATAC
CAATGCCGGCAAGAAATTCGTTCGCGTTGCCCGAGAAGGCTGCGACTTGG
CCTGGGCTGACATGGAGGGAGACCACTCCACCATTGCCTGTTGCTCCCAC
ACTCCCTCCCTCCCTTCCTCACCCTCCCTTGGAAACGATGAGAGATGGGA
TGCGGCGTTGTGTGCTGCTGCTACTTCTGCGGGGACCAAGCGGTTGACAA
GTTCCCTTGCTGCCCTTCTTCCCTTCCTCACCTGGGGGTTGAATTGCCTC
TTTTTTGCAGCGACGTCATGGTGGAGGAGAAGGAGGAGGGGGGGAAGGGA
GGGCTGGGAGGAGGAAGAGAAGGCGGGAAGAGTGTGGATGGGACAATATA
GACGGTTAGGGTTATATGCATTCGTGATCATGTTTCGGACGGGCGTGTTG
TTGATGTGCTTGAATCGAGTGCAGGCATGGGTGCAAGATGCAGACCCGCA
GCAGCGCCAAGGCCACAAAACGGGAAGAGAACCACGCCCACACCCTCATC
GACGAAGAAAATGAACTTAATAGACCCACCTCTCCCGTGGCGATCTCGCC
TTCCTCACGGTCCAGCTACCCCTCATGCTCATCGCCTCGGGTCGGCTCTC
CCACCACCGGTACCTCCGCATCAGCCACTACATCAAAGTTTAAGCCACAT
CTCTCCCCCATCTCCTCTTATGCATTACCACGGCCTGTCTTATCTCCCTC
ATTTCTCTCGTCGGATTCTACGACACGGTCAGCTTCTTCCACACGCGGTT
GGAGAGTGTGGTGGGCGTTGTGTTGTCGGAGGAGAGCGATGCGTGCTGGT
ACTCTGGATTGAGGCACGACGGGCGGTGTCGAGAGCGGTTTGATTTCGCC
GATCACGGCGTCTTGTTCCTGTCGCAATATTTGGCCATCCAGACATTCGA
AGTGCTGGCAGTGCTCAGAGAGGGCCTGTATCTCTTCATTCTCGAATTTC
TCACGATCGGTCTCGTCCTCTCGAAAGCACTGCATACCAATGCCGGCAAG
AAATTCGTTCGCGTTGCCCGAGAAGGCTGCGACTTGGCCTGGGCTGACAT
GGAGGGAGACCACTCCACCATTGCCTGTTGCTCCCACACTCCCTCCCTCC
CTTCCTCACCCTCCCTTGGAAACGATGAGAGATGGGATGCGGCGTTGTGT
GCTGCTGCTACTTCTGCGGGGACCAAGCGGTTGACAAGTTCCCTTGCTGC
CCTTCTTCCCTTCCTCACCTGGGGGTTGAATTGCCTCTTTTTTGCAGCGA
CGTCATGGTGGAGGAGAAGGAGGAGGGGGGGAAGGGAGGGCTGGGAGGAG
GAAGAGAAGGCGGGAAGAGTGTGGATGGGACAATATAGACGGTTAGGGTT
ATATGCATTCGTGATCATGTTTCGGACGGGCGTGTTGTTGATGTGCTTGA
ATCGAGTGCAGGCATGGGTGCAAGATGCAGACCCGCAGCAGCGCCAAGGC
CACAAAACGGGAAGAGAACCACGCCCACACCCTCATCGACGAAGAAAATG
AACTTAATAGACCCACCTCTCCCGTGGCGATCTCG back to top
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