jgi.p|Nanoce1779_2|576661, mRNA_240 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576661
Unique Name	mRNA_240
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2326
Alignment location	scaffold_3:597405..599730 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576747
Track	FilteredModels2
ProteinId	576661

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:597405..599730 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576661	gene_240	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576661	mRNA_240-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_240	CDS_240	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:597405..599730+
coding sequence from alignment at scaffold_3:597405..599730+

mRNA sequence

>mRNA_240 ID=mRNA_240|Name=jgi.p|Nanoce1779_2|576661|organism=Nannochloropsis oceanica|type=mRNA|length=2326bp
ACAGGCGCGGTCATGACGTTCTGGAAGCCGGGAGCCGCGGCACCAAGGCT
GAGAGAGGAGCGGCCGGTGGGGTTGTCGGAAGCGGGTGCTAGCAGCACCC
TGGGGTACAACCCTCGCAGCAAGCTCCCTCTCAAGCAGCAACGTCTGCAG
TTGCCAATTGCTCAGGCTCGATCCGGCATTTTGTATGCACTGGAGCGCTA
CCGTACGCTGGTTCTGGTAGGTGAGACGGGCTCGGGCAAGTCTACGCAGG
TACCGCAGTATTTGCACGAAGGGGGGTGGACTCATGGTGGGAGGGTAGTA
CTCTGCACACAGCCCCGCCGCGTGGCGGCCGTTACTGTGGCCTCACGCGT
GGCTCAAGAGATGGGTTGCATACTAGGACAACAAGTGGGCTATGTCGTAC
GGTTTGACAGTCGTGTGGATGAGGCTGGGACGCGCACGGCCATTAAATTC
GTGACGGACGGCCTGCTGTTGAGGGAGACGCTTTATGACCCCTTGCTTTC
AGCCTATTCGGTCATCATGCTCGACGAGGCCCATGAACGCAGCATGTACA
CCGATGTGCTTTTAGGTTTGTTGAAAAAAGTGCGCAAGCGCCGGCCCGAA
CTTCGCATCATCATCTCGTCCGCCACGGCCGACGCAGAGGCGTTTCGGGA
CTATTTTGAGACGCATACCCATAGTGGTGGCAGCATCAGCAACAAGGCAG
ACAACCAAGCCATTGGCACACACGACGCCACCATCATAAGCATTATGGGG
CGACAACATGCCGTAGACGTATTGTACATGGAAAAGCCGGCGCGGAACTA
CTTGCGGGCGGCCGTCGAGGCGGTTCTCTCCATCGTGCAAGGAGAGGGCA
GGGGGGACATTCTCGTCTTTTTGCCAGGCATGGAAGAGATAGACCAAGCT
GTCACCAACACAAAAGAACAGTTGGGGGGCCTGGGCTACGGAGTGGAAGA
TGCGGTGCTGGTTCTGCCTCTGTACGCCTCCCTGCCGCAGCACCTGCAGA
TGAAAGCTCTGGGGCCTGCCCCACGACACGTTGAGCGCAAGGTCCTTTTT
GCCACCAACATCGCCGAGACTTCTTTGACCATTGAAGGAGTCCGTTTTAT
TGTAGATACAGGATTTGTCAAACTTCCTGTGTATGACGTGCGGACGGGAT
TTGAATCCCTCGTCACCACGCCCATCTCCAAGGCCAGCGCCGCACAACGC
GCCGGTCGAGCAGGCCGCACGGGACCGGGGAAATGTATGCGGTTGTACAC
CGAGGAGGCTTTCATAAAACTACCTGCTCATACTTTGCCCGAGGTACAGC
GGAGCAACTTGGCTTGGATGATTCTGCAGCTCAAGGCGCTGGGGATCGAC
GAGGTCATGAGCTTTGACTTCATTTCGCAGCCCTCGGCCGAAGCTATGAT
GCGTGGCCTAGAGCTGCTGTACGCCCTGGGCGCGCTGGACGATCGCTGCC
ATCTCAGCTCGGAGCTTGGAGAGAAAATGGCCGAGTTCCCGGTAGAACCT
CGCTTGGCCAAGGTGTTGCTAGCTTCATTTGATTTCCACTGCACGGAAGA
GGCATTGACGGTAGTGGCCCTCCTCCAAGTCCAGAACTTGTGGACGAGCC
CCAAGGGCCGCGAGAGCCGGGCGCTTCAGGAAGAGTCCATGTCCGATTTG
GCTCAACGTGAGGGAGATCATCTGACGCTGCTGCATATCTATCGAGCATG
GGAAGAGGCAGGCCGGTCCATGGAGTGGTGCACAGAGCGCTTTATTAATC
CACGCAGCCTAGCCCGCGCGAGAGAGATTCGAGGCCAGCTCCGAAAATAC
TTGGAGAGATACAAGCCAGCCGGCAGTGTCTTTGCTTCGTGCTGCGAGGA
CACCGAGGCTCTGCGCCGGTGCATCGTGGCAGGATTTTTTTTTAATGCGG
CACGGCTTCAGAGCGACGGAAGGTATTTCACGGTGCGAGGGGAGCACCCT
GTGGCCCTCCACCCGGCTTCTGTGCTGGCCAAGTATGGGACACCGGCAGA
ATGGGTCGTTTTTCATGACGTCGTTCTAACCACCGAACCTTTCTTGCGGG
ATTGTTCTCGTATCCAGCCCCTTTGGTTGATGGAGCTGGCCCCGCACTTC
TATGCCTACGGTGGCGGAGGACGAAACGTATGGCCTAACCTGGTGTAAGA
AAAACCTGCAATATATACGGAATCCGCAAATTGTTTTTTATTATGCGAGA
CTTGGCCGCCAAACAGAAAGGTGTACAAAAAGAAACGTAGAAAGTGAGTT
TACGTAGATATAGTAAGTGTAGGTACAGTAAGAAGCAAGTAATTTAAATA
AAAAAAAATCGAGCATGCGTTAGTCA

protein sequence of jgi.p|Nanoce1779_2|576661

>mRNA_240-protein ID=mRNA_240-protein|Name=jgi.p|Nanoce1779_2|576661|organism=Nannochloropsis oceanica|type=polypeptide|length=712bp
MTFWKPGAAAPRLREERPVGLSEAGASSTLGYNPRSKLPLKQQRLQLPIA
QARSGILYALERYRTLVLVGETGSGKSTQVPQYLHEGGWTHGGRVVLCTQ
PRRVAAVTVASRVAQEMGCILGQQVGYVVRFDSRVDEAGTRTAIKFVTDG
LLLRETLYDPLLSAYSVIMLDEAHERSMYTDVLLGLLKKVRKRRPELRII
ISSATADAEAFRDYFETHTHSGGSISNKADNQAIGTHDATIISIMGRQHA
VDVLYMEKPARNYLRAAVEAVLSIVQGEGRGDILVFLPGMEEIDQAVTNT
KEQLGGLGYGVEDAVLVLPLYASLPQHLQMKALGPAPRHVERKVLFATNI
AETSLTIEGVRFIVDTGFVKLPVYDVRTGFESLVTTPISKASAAQRAGRA
GRTGPGKCMRLYTEEAFIKLPAHTLPEVQRSNLAWMILQLKALGIDEVMS
FDFISQPSAEAMMRGLELLYALGALDDRCHLSSELGEKMAEFPVEPRLAK
VLLASFDFHCTEEALTVVALLQVQNLWTSPKGRESRALQEESMSDLAQRE
GDHLTLLHIYRAWEEAGRSMEWCTERFINPRSLARAREIRGQLRKYLERY
KPAGSVFASCCEDTEALRRCIVAGFFFNAARLQSDGRYFTVRGEHPVALH
PASVLAKYGTPAEWVVFHDVVLTTEPFLRDCSRIQPLWLMELAPHFYAYG
GGGRNVWPNLV*

mRNA from alignment at scaffold_3:597405..599730+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_240 ID=mRNA_240|Name=jgi.p|Nanoce1779_2|576661|organism=Nannochloropsis oceanica|type=mRNA|length=2326bp|location=Sequence derived from alignment at scaffold_3:597405..599730+ (Nannochloropsis oceanica)
ACAGGCGCGGTCATGACGTTCTGGAAGCCGGGAGCCGCGGCACCAAGGCT
GAGAGAGGAGCGGCCGGTGGGGTTGTCGGAAGCGGGTGCTAGCAGCACCC
TGGGGTACAACCCTCGCAGCAAGCTCCCTCTCAAGCAGCAACGTCTGCAG
TTGCCAATTGCTCAGGCTCGATCCGGCATTTTGTATGCACTGGAGCGCTA
CCGTACGCTGGTTCTGGTAGGTGAGACGGGCTCGGGCAAGTCTACGCAGG
TACCGCAGTATTTGCACGAAGGGGGGTGGACTCATGGTGGGAGGGTAGTA
CTCTGCACACAGCCCCGCCGCGTGGCGGCCGTTACTGTGGCCTCACGCGT
GGCTCAAGAGATGGGTTGCATACTAGGACAACAAGTGGGCTATGTCGTAC
GGTTTGACAGTCGTGTGGATGAGGCTGGGACGCGCACGGCCATTAAATTC
GTGACGGACGGCCTGCTGTTGAGGGAGACGCTTTATGACCCCTTGCTTTC
AGCCTATTCGGTCATCATGCTCGACGAGGCCCATGAACGCAGCATGTACA
CCGATGTGCTTTTAGGTTTGTTGAAAAAAGTGCGCAAGCGCCGGCCCGAA
CTTCGCATCATCATCTCGTCCGCCACGGCCGACGCAGAGGCGTTTCGGGA
CTATTTTGAGACGCATACCCATAGTGGTGGCAGCATCAGCAACAAGGCAG
ACAACCAAGCCATTGGCACACACGACGCCACCATCATAAGCATTATGGGG
CGACAACATGCCGTAGACGTATTGTACATGGAAAAGCCGGCGCGGAACTA
CTTGCGGGCGGCCGTCGAGGCGGTTCTCTCCATCGTGCAAGGAGAGGGCA
GGGGGGACATTCTCGTCTTTTTGCCAGGCATGGAAGAGATAGACCAAGCT
GTCACCAACACAAAAGAACAGTTGGGGGGCCTGGGCTACGGAGTGGAAGA
TGCGGTGCTGGTTCTGCCTCTGTACGCCTCCCTGCCGCAGCACCTGCAGA
TGAAAGCTCTGGGGCCTGCCCCACGACACGTTGAGCGCAAGGTCCTTTTT
GCCACCAACATCGCCGAGACTTCTTTGACCATTGAAGGAGTCCGTTTTAT
TGTAGATACAGGATTTGTCAAACTTCCTGTGTATGACGTGCGGACGGGAT
TTGAATCCCTCGTCACCACGCCCATCTCCAAGGCCAGCGCCGCACAACGC
GCCGGTCGAGCAGGCCGCACGGGACCGGGGAAATGTATGCGGTTGTACAC
CGAGGAGGCTTTCATAAAACTACCTGCTCATACTTTGCCCGAGGTACAGC
GGAGCAACTTGGCTTGGATGATTCTGCAGCTCAAGGCGCTGGGGATCGAC
GAGGTCATGAGCTTTGACTTCATTTCGCAGCCCTCGGCCGAAGCTATGAT
GCGTGGCCTAGAGCTGCTGTACGCCCTGGGCGCGCTGGACGATCGCTGCC
ATCTCAGCTCGGAGCTTGGAGAGAAAATGGCCGAGTTCCCGGTAGAACCT
CGCTTGGCCAAGGTGTTGCTAGCTTCATTTGATTTCCACTGCACGGAAGA
GGCATTGACGGTAGTGGCCCTCCTCCAAGTCCAGAACTTGTGGACGAGCC
CCAAGGGCCGCGAGAGCCGGGCGCTTCAGGAAGAGTCCATGTCCGATTTG
GCTCAACGTGAGGGAGATCATCTGACGCTGCTGCATATCTATCGAGCATG
GGAAGAGGCAGGCCGGTCCATGGAGTGGTGCACAGAGCGCTTTATTAATC
CACGCAGCCTAGCCCGCGCGAGAGAGATTCGAGGCCAGCTCCGAAAATAC
TTGGAGAGATACAAGCCAGCCGGCAGTGTCTTTGCTTCGTGCTGCGAGGA
CACCGAGGCTCTGCGCCGGTGCATCGTGGCAGGATTTTTTTTTAATGCGG
CACGGCTTCAGAGCGACGGAAGGTATTTCACGGTGCGAGGGGAGCACCCT
GTGGCCCTCCACCCGGCTTCTGTGCTGGCCAAGTATGGGACACCGGCAGA
ATGGGTCGTTTTTCATGACGTCGTTCTAACCACCGAACCTTTCTTGCGGG
ATTGTTCTCGTATCCAGCCCCTTTGGTTGATGGAGCTGGCCCCGCACTTC
TATGCCTACGGTGGCGGAGGACGAAACGTATGGCCTAACCTGGTGTAAGA
AAAACCTGCAATATATACGGAATCCGCAAATTGTTTTTTATTATGCGAGA
CTTGGCCGCCAAACAGAAAGGTGTACAAAAAGAAACGTAGAAAGTGAGTT
TACGTAGATATAGTAAGTGTAGGTACAGTAAGAAGCAAGTAATTTAAATA
AAAAAAAATCGAGCATGCGTTAGTCA

Coding sequence (CDS) from alignment at scaffold_3:597405..599730+

>mRNA_240 ID=mRNA_240|Name=jgi.p|Nanoce1779_2|576661|organism=Nannochloropsis oceanica|type=CDS|length=2136bp|location=Sequence derived from alignment at scaffold_3:597405..599730+ (Nannochloropsis oceanica)
ATGACGTTCTGGAAGCCGGGAGCCGCGGCACCAAGGCTGAGAGAGGAGCG
GCCGGTGGGGTTGTCGGAAGCGGGTGCTAGCAGCACCCTGGGGTACAACC
CTCGCAGCAAGCTCCCTCTCAAGCAGCAACGTCTGCAGTTGCCAATTGCT
CAGGCTCGATCCGGCATTTTGTATGCACTGGAGCGCTACCGTACGCTGGT
TCTGGTAGGTGAGACGGGCTCGGGCAAGTCTACGCAGGTACCGCAGTATT
TGCACGAAGGGGGGTGGACTCATGGTGGGAGGGTAGTACTCTGCACACAG
CCCCGCCGCGTGGCGGCCGTTACTGTGGCCTCACGCGTGGCTCAAGAGAT
GGGTTGCATACTAGGACAACAAGTGGGCTATGTCGTACGGTTTGACAGTC
GTGTGGATGAGGCTGGGACGCGCACGGCCATTAAATTCGTGACGGACGGC
CTGCTGTTGAGGGAGACGCTTTATGACCCCTTGCTTTCAGCCTATTCGGT
CATCATGCTCGACGAGGCCCATGAACGCAGCATGTACACCGATGTGCTTT
TAGGTTTGTTGAAAAAAGTGCGCAAGCGCCGGCCCGAACTTCGCATCATC
ATCTCGTCCGCCACGGCCGACGCAGAGGCGTTTCGGGACTATTTTGAGAC
GCATACCCATAGTGGTGGCAGCATCAGCAACAAGGCAGACAACCAAGCCA
TTGGCACACACGACGCCACCATCATAAGCATTATGGGGCGACAACATGCC
GTAGACGTATTGTACATGGAAAAGCCGGCGCGGAACTACTTGCGGGCGGC
CGTCGAGGCGGTTCTCTCCATCGTGCAAGGAGAGGGCAGGGGGGACATTC
TCGTCTTTTTGCCAGGCATGGAAGAGATAGACCAAGCTGTCACCAACACA
AAAGAACAGTTGGGGGGCCTGGGCTACGGAGTGGAAGATGCGGTGCTGGT
TCTGCCTCTGTACGCCTCCCTGCCGCAGCACCTGCAGATGAAAGCTCTGG
GGCCTGCCCCACGACACGTTGAGCGCAAGGTCCTTTTTGCCACCAACATC
GCCGAGACTTCTTTGACCATTGAAGGAGTCCGTTTTATTGTAGATACAGG
ATTTGTCAAACTTCCTGTGTATGACGTGCGGACGGGATTTGAATCCCTCG
TCACCACGCCCATCTCCAAGGCCAGCGCCGCACAACGCGCCGGTCGAGCA
GGCCGCACGGGACCGGGGAAATGTATGCGGTTGTACACCGAGGAGGCTTT
CATAAAACTACCTGCTCATACTTTGCCCGAGGTACAGCGGAGCAACTTGG
CTTGGATGATTCTGCAGCTCAAGGCGCTGGGGATCGACGAGGTCATGAGC
TTTGACTTCATTTCGCAGCCCTCGGCCGAAGCTATGATGCGTGGCCTAGA
GCTGCTGTACGCCCTGGGCGCGCTGGACGATCGCTGCCATCTCAGCTCGG
AGCTTGGAGAGAAAATGGCCGAGTTCCCGGTAGAACCTCGCTTGGCCAAG
GTGTTGCTAGCTTCATTTGATTTCCACTGCACGGAAGAGGCATTGACGGT
AGTGGCCCTCCTCCAAGTCCAGAACTTGTGGACGAGCCCCAAGGGCCGCG
AGAGCCGGGCGCTTCAGGAAGAGTCCATGTCCGATTTGGCTCAACGTGAG
GGAGATCATCTGACGCTGCTGCATATCTATCGAGCATGGGAAGAGGCAGG
CCGGTCCATGGAGTGGTGCACAGAGCGCTTTATTAATCCACGCAGCCTAG
CCCGCGCGAGAGAGATTCGAGGCCAGCTCCGAAAATACTTGGAGAGATAC
AAGCCAGCCGGCAGTGTCTTTGCTTCGTGCTGCGAGGACACCGAGGCTCT
GCGCCGGTGCATCGTGGCAGGATTTTTTTTTAATGCGGCACGGCTTCAGA
GCGACGGAAGGTATTTCACGGTGCGAGGGGAGCACCCTGTGGCCCTCCAC
CCGGCTTCTGTGCTGGCCAAGTATGGGACACCGGCAGAATGGGTCGTTTT
TCATGACGTCGTTCTAACCACCGAACCTTTCTTGCGGGATTGTTCTCGTA
TCCAGCCCCTTTGGTTGATGGAGCTGGCCCCGCACTTCTATGCCTACGGT
GGCGGAGGACGAAACGTATGGCCTAACCTGGTGTAA

Synonyms

Publications