jgi.p|Nanoce1779_2|575936, mRNA_24 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575936
Unique Name	mRNA_24
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1952
Alignment location	scaffold_3:72980..75324 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576022
Track	FilteredModels2
ProteinId	575936

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:72980..75324 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575936	gene_24	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575936	mRNA_24-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_24	CDS_24	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:72980..75324+
coding sequence from alignment at scaffold_3:72980..75324+

mRNA sequence

>mRNA_24 ID=mRNA_24|Name=jgi.p|Nanoce1779_2|575936|organism=Nannochloropsis oceanica|type=mRNA|length=1952bp
GGAAGAGGTGGTAATTCAGACACTAGCCCCTTTGGGCATCGAGGGTGGGA
GGGAGGAGGGACTGACGGGTGTTTGGGTTGAGGGGCATAAGGTGGCGGCG
GTCGGCGTGAAGGTCAAGCGGTGGGTGACTATGCATGGGGTGGCCCTGAA
TGTGGATCCCTCCATGGACTATTTCAAGCACATTGTGCCATGTGGTATTG
GGGATCGGCCTGTAGGCTCGGTAATGAACTTTTGGAAAGGGGAATCCGGC
AAGGAGGTTATAACGGTTGAGGAGGTGGCGTTGTTGATGAAACGCGCTTT
CGAGGACGTATTTGGGGTTGTTTTGGTTGACGCGGAACATAGTGGCGAAG
AAAACTAGGGGATGAGAATAAGATGAGACAAAAAAAGAATGTAAATATAT
ATATATATATATAATGAAACCATGATTGGAAAAGACATGCGCCTAGCGTT
CGAAGACTGAGGCTCTGCCGCAAAACAAGTGGGTCGCGTTGAGCATATAA
AACTACAAACAAACATTGGGTTTGGCTGGTATTGAGGAAGGATGAAGGAA
AATATAAAGCTTCAAATTGCATGAAGAGAGCAAATACATTAATGTACGAA
AATGTATTGATAGGCTCATTTCTTGAATAAAGTACGTTCCTCCACTTTCG
ACAGATTGATGAAGTTCAAGACAGGAGGTCAAGCCCCTTATCTTTCACAA
ATGTGCAGAGGCCCCTTCTCAGTCTTTGACCAAACAAAGACATCCAGCGT
ATTTCAAACCCGGCGTGATGTGGCAAACGAATGAGCGACGACAAGCGGAG
CAGTACCTGTTGCGGGCCGGGCGCACGCAGAGATCATCATAGTTGACGCC
CCACTGCCCAAGCCACCCAGCCCCAGCCGCGCACGCTGCCTGCTCGAAGG
GTCGAAAAGATAATATGCGCCCAAAACAAGGGACTACAACACCGGCTCAT
TTCGGGGTCCGAAGCTGTTGGTATTCTGATGTTCCACAGCTCGTCTTTGT
CAGGAAGGCAGCTGGCACAGTTGTCTGAACATGATATCCGACGATCCATC
CGGTCCGTAGAGGGCGCGTGCGCTTTTTCTTATACTTAAGTTTGTCAAGT
CTATGACACCCTTCCCTTTATCACATTTCCTGAAATAGCAGGACGCACGG
TGCCGTTGCAATTATTGTTCTTGCTCGAAGCTGTGAAACGGAATCACCAC
ACTCGTCCCTACGCCTCGCGTCCTGGCTGGACTTCAATCATGCCTGGCCC
ACCCCTGCCTCCGACTCCGCTGGGTGCCGCGGCTGTCCCCTCCCTGTGTA
CCGCCAAAGTAATGGTTGAGGTCTTCCTGGACCTTGACTGTCCGTTTTCC
CGCAAGTGCTTCAAAACCCTCTACGAGGGGAGTGTGATCGATGCGTACAA
AGGAAAGCCCGTGCAGTTTCTGGTGCAGAACGTGATTCAACCGTGGCATG
CTGTAGGGAGTTTGATGCATGAAGTCAGCCTGGCCGTTAAGAGCACGCAG
CCTTCTCATTTCTATCCCTTTGTCAATCGAATTTTCGACGCGCAGGAGTC
ATTTTCGGATTTGGCGACGGAGAAGATGACGAGGGGGGAGATTATGGAAG
CCTTGGTGTCCCTAGCCGTAGAGGTGGGCGTGTCCCGCAAGGGACTGGAG
GAAAGGATTGCTTTGAGAGGGGGAGGAGGGGGCAATGCGGGGTCGGCGAC
GACGCAGGTTGTGAAGTGGGCGTGTAAATACCATCGGAGTCGAGGGGTGC
ATGCAACCCCGACAGTGTTTGTGAATGGCATAGAGGCGAGCCATATATCA
AGTGCATGGACGGTGGTGGAGTGGAAGGAGTTGTTGGACGACTGCCTGGC
AGCGAGTTTTTGAGAGGGAAGGAGCGAGGGAGGGAGGGAGAGAGGGTGAG
GGGGAGGAAGAGATATGGCTAGTGAAGTCACATGGTAGGTGCATGTGTGT
GC

protein sequence of jgi.p|Nanoce1779_2|575936

>mRNA_24-protein ID=mRNA_24-protein|Name=jgi.p|Nanoce1779_2|575936|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MPGPPLPPTPLGAAAVPSLCTAKVMVEVFLDLDCPFSRKCFKTLYEGSVI
DAYKGKPVQFLVQNVIQPWHAVGSLMHEVSLAVKSTQPSHFYPFVNRIFD
AQESFSDLATEKMTRGEIMEALVSLAVEVGVSRKGLEERIALRGGGGGNA
GSATTQVVKWACKYHRSRGVHATPTVFVNGIEASHISSAWTVVEWKELLD
DCLAASF*

mRNA from alignment at scaffold_3:72980..75324+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_24 ID=mRNA_24|Name=jgi.p|Nanoce1779_2|575936|organism=Nannochloropsis oceanica|type=mRNA|length=2345bp|location=Sequence derived from alignment at scaffold_3:72980..75324+ (Nannochloropsis oceanica)
GGAAGAGGTGGTAATTCAGACACTAGCCCCTTTGGGCATCGAGGGTGGGA
GGGAGGAGGGACTGACGGGTGTTTGGGTTGAGGGGCATAAGGTGGCGGCG
GTCGGCGTGAAGGTCAAGCGGTGGGTGACTATGCATGGGGTGGCCCTGAA
TGTGGATCCCTCCATGGACTATTTCAAGCACATTGTGCCATGTGGTATTG
GGGATCGGCCTGTAGGCTCGGTAATGAACTTTTGGAAAGGGGAATCCGGC
AAGGAGGTTATAACGGTTGAGGAGGTGGCGTTGTTGATGAAACGCGCTTT
CGAGGACGTATTTGGGGTTGTTTTGGTTGACGCGGAACATAGTGGCGAAG
AAAACTAGGGGATGAGAATAAGATGAGACAAAAAAAGAATGTAAATATAT
ATATATATATATAATGAAACCATGATTGGAAAAGACATGCGCCTAGCGTT
CGAAGACTGAGGCTCTGCCGCAAAACAAGTGGGTCGCGTTGAGCATATAA
AACTACAAACAAACATTGGGTTTGGCTGGTATTGAGGAAGGATGAAGGAA
AATATAAAGCTTCAAATTGCATGAAGAGAGCAAATACATTAATGTACGAA
AATGTATTGATAGGCTCATTTCTTGAATAAAGTACGTTCCTCCACTTTCG
ACAGATTGATGAAGTTCAAGACAGGAGGTCAAGCCCCTTATCTTTCACAA
ATGTGCAGAGGCCCCTTCTCAGTCTTTGACCAAACAAAGACATCCAGCGT
ATTTCAAACCCGGCGTGATGTGGCAAACGAATGAGCGACGACAAGCGGAG
CAGTACCTGTTGCGGGCCGGGCGCACGCAGAGATCATCATAGTTGACGCC
CCACTGCCCAAGCCACCCAGCCCCAGCCGCGCACGCTGCCTGCTCGAAGG
GTCGAAAAGATAATATGCGCCCAAAACAAGGGACTACAACACCGGCTCAT
TTCGGGGTCCGAAGCTGTTGGTATTCTGATGTTCCACAGCTCGTCTTTGT
CAGGAAGGCAGCTGGCACAGTTGTCTGAACATGATATCCGACGATCCATC
CGGTCCGTAGAGGGCGCGTGCGCTTTTTCTTATACTTAAGTTTGTCAAGT
CTATGACACCCTTCCCTTTATCACATTTCCTGAAATAGCAGGACGCACGG
TGCCGTTGCAATTATTGTTCTTGCTCGAAGCTGTGAAACGGAATCACCAC
ACTCGTCCCTACGCCTCGCGTCCTGGCTGGACTTCAATCATGCCTGGCCC
ACCCCTGCCTCCGACTCCGCTGGGTGCCGCGGCTGTCCCCTCCCTGTGTA
CCGCCAAAGTAATGGTTGAGGTGCGTGTATTGCGAGGGGAGGGGGGTGGA
CGGGGTGAGCGTTATCGCTCACGCAGTTGGATCAAAACAGCCTCCTTGCT
GTCTGCTTGAGTATTGACCCTTGACACACCATTCATCCCGAGGCCTTCGA
TTAGCAGGTCGCCAATAGGCATGGTACGGGGCATGACATAATTTTAGGAG
CACATCTAGCACTAGAGTAGAGGCACTGCATCCTCCAGTTGCCGTTCTCA
TTCCTCTCATTCCTCTCGCGACATCATTAGCACCCGTCCTTCATCCCTCG
GTCCCTCGGTCCTTCAGCTCTGTTCCCAAAAACACATGATGTCTGACTCA
AGTGTATCAACACAATATCCACTCACTTCTTTGTTTCCCCCTTCTCCCTT
CCCTCGCACACAGGTCTTCCTGGACCTTGACTGTCCGTTTTCCCGCAAGT
GCTTCAAAACCCTCTACGAGGGGAGTGTGATCGATGCGTACAAAGGAAAG
CCCGTGCAGTTTCTGGTGCAGAACGTGATTCAACCGTGGCATGCTGTAGG
GAGTTTGATGCATGAAGTCAGCCTGGCCGTTAAGAGCACGCAGCCTTCTC
ATTTCTATCCCTTTGTCAATCGAATTTTCGACGCGCAGGAGTCATTTTCG
GATTTGGCGACGGAGAAGATGACGAGGGGGGAGATTATGGAAGCCTTGGT
GTCCCTAGCCGTAGAGGTGGGCGTGTCCCGCAAGGGACTGGAGGAAAGGA
TTGCTTTGAGAGGGGGAGGAGGGGGCAATGCGGGGTCGGCGACGACGCAG
GTTGTGAAGTGGGCGTGTAAATACCATCGGAGTCGAGGGGTGCATGCAAC
CCCGACAGTGTTTGTGAATGGCATAGAGGCGAGCCATATATCAAGTGCAT
GGACGGTGGTGGAGTGGAAGGAGTTGTTGGACGACTGCCTGGCAGCGAGT
TTTTGAGAGGGAAGGAGCGAGGGAGGGAGGGAGAGAGGGTGAGGGGGAGG
AAGAGATATGGCTAGTGAAGTCACATGGTAGGTGCATGTGTGTGC

Coding sequence (CDS) from alignment at scaffold_3:72980..75324+

>mRNA_24 ID=mRNA_24|Name=jgi.p|Nanoce1779_2|575936|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_3:72980..75324+ (Nannochloropsis oceanica)
ATGCCTGGCCCACCCCTGCCTCCGACTCCGCTGGGTGCCGCGGCTGTCCC
CTCCCTGTGTACCGCCAAAGTAATGGTTGAGGTCTTCCTGGACCTTGACT
GTCCGTTTTCCCGCAAGTGCTTCAAAACCCTCTACGAGGGGAGTGTGATC
GATGCGTACAAAGGAAAGCCCGTGCAGTTTCTGGTGCAGAACGTGATTCA
ACCGTGGCATGCTGTAGGGAGTTTGATGCATGAAGTCAGCCTGGCCGTTA
AGAGCACGCAGCCTTCTCATTTCTATCCCTTTGTCAATCGAATTTTCGAC
GCGCAGGAGTCATTTTCGGATTTGGCGACGGAGAAGATGACGAGGGGGGA
GATTATGGAAGCCTTGGTGTCCCTAGCCGTAGAGGTGGGCGTGTCCCGCA
AGGGACTGGAGGAAAGGATTGCTTTGAGAGGGGGAGGAGGGGGCAATGCG
GGGTCGGCGACGACGCAGGTTGTGAAGTGGGCGTGTAAATACCATCGGAG
TCGAGGGGTGCATGCAACCCCGACAGTGTTTGTGAATGGCATAGAGGCGA
GCCATATATCAAGTGCATGGACGGTGGTGGAGTGGAAGGAGTTGTTGGAC
GACTGCCTGGCAGCGAGTTTTTGAATGCCTGGCCCACCCCTGCCTCCGAC
TCCGCTGGGTGCCGCGGCTGTCCCCTCCCTGTGTACCGCCAAAGTAATGG
TTGAGGTCTTCCTGGACCTTGACTGTCCGTTTTCCCGCAAGTGCTTCAAA
ACCCTCTACGAGGGGAGTGTGATCGATGCGTACAAAGGAAAGCCCGTGCA
GTTTCTGGTGCAGAACGTGATTCAACCGTGGCATGCTGTAGGGAGTTTGA
TGCATGAAGTCAGCCTGGCCGTTAAGAGCACGCAGCCTTCTCATTTCTAT
CCCTTTGTCAATCGAATTTTCGACGCGCAGGAGTCATTTTCGGATTTGGC
GACGGAGAAGATGACGAGGGGGGAGATTATGGAAGCCTTGGTGTCCCTAG
CCGTAGAGGTGGGCGTGTCCCGCAAGGGACTGGAGGAAAGGATTGCTTTG
AGAGGGGGAGGAGGGGGCAATGCGGGGTCGGCGACGACGCAGGTTGTGAA
GTGGGCGTGTAAATACCATCGGAGTCGAGGGGTGCATGCAACCCCGACAG
TGTTTGTGAATGGCATAGAGGCGAGCCATATATCAAGTGCATGGACGGTG
GTGGAGTGGAAGGAGTTGTTGGACGACTGCCTGGCAGCGAGTTTTTGA

Synonyms

Publications