Properties
| Property Name | Value |
|---|
| TranscriptId | 669095 |
| Track | FilteredModels2 |
| ProteinId | 669009 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:234754..237603 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2396 ID=mRNA_2396|Name=jgi.p|Nanoce1779_2|669009|organism=Nannochloropsis oceanica|type=mRNA|length=2357bp
CACCTATCTCGCTCCCCCTTCTCGCTGTCCTTCTCGGTGGGTGCACGCCG
CGCTCCCTGCCTGCCTGTTGTGTGTGTATTCGTGCAGGATGAAGGGATGG
TGAGGGGATGAGGGGGAAGGGGTAGATGAGTGGCTGATTGCAGGCACTAC
GGACGGAGGCCCGAGTTGAGCTCCATGTCGTGCTTCTTCAAGCCTTAGTT
GGTCTTCCGAGGGCAAAACACACGCCGGCTGAGACCCTCTTCCGCCTGTA
GCAGACCAGAAGGGTGGAAAAGAGGCGTGAGATCAAATATTGCCTAGCTT
TGGGCTTGCGTGGGCGGAGACAGAGTGGGTGGCGTGGACTACCAAGCCCC
AAAAGTCATGGCCCGGGGAAGAAGAGGAGTCGTTATGGCCCTTAGCTAGT
CGCCCGCCCTCCGCGGCGTTTGTATCACTGCATATCAGCCCTGAACGAGA
AGGAGGAGAAGAGGAGTAGTGTAGAGATACCTGAGATTTATGTCCATGTG
GTGAGGAGTCTGTGTGTGAATTGAGGCCATAGCCAATGAGGGCAGGACTC
AATTTGACTTGGTGCCCTCGTACACAACACGGACTCGTCGGTCGAGCGAT
ACTTGGATCAATCCTCATCATACCAATGCACATTATTGCTCGTCTCCTTG
CTGAAATTCGTTAGATTACACGGCCATCACCTATTGAACAATTAGACAGG
CCTCCAGCGAACGAGCACCAGGGCTTGTCGTTTTTGGGTGGCCAGCATTT
TACCGTCTCCACTCGTTCAACCGGCCAGCAGCAGCACTTAGCTTCGGGGC
CTTGTTCTATTTCGACGCACTCCTAGCCTCCCACACACCACCACGCTAGC
CACACCCGTCATGCCTCGTCGAACCGGTCAACGCAGCAGTGGTAGCAGCG
ATGATGCTGGGTCGAATGGACAGGTCTTGCGCTTGCAACAGCAGATTAGG
GATGGGGAGACCTACGAGGCTCTCCAGACGACACGGGCTCTCTTTGCCCG
GATGGAACGCAGTGGCAAACGTGGAGGCGGAGGGGAGGCACGTGCGATCC
TTTTGAAAGTGGCCAGTACACTGGCCGAGGCGGGGGAGTTCAAGTCGGCC
TTGGATTTGGCGCGTTTGTACATGACGAATAATAAGAGGGAAAATGGTTC
GACTGCTGCTGCTGGTGGTGGTGGTGCCGCTGCGAGCGGTAATCGAGTAG
AAGAATTGAGTGCCAAAGAAGCTAGAGAAACTGCCGCCATACCTTCTTCT
TCCTTATCAAAAACGGAAACAGAAGAGGAGGATCACCCTTCCTGGATACC
CCATCGCTTTGCAACGGGGGGACGGGTGGCCATGTTGTCACTTGCGCGGA
TGCTGCCACAAGGATCGAAGGAACGTGTGTCGTTGCTAAAAGGCATCACG
CGGTGGGCCGTGGAGGAACAGAAGCAGCAGCAGCTGGAGGAAGGTGAGGA
AGAAGAGGAGGGTTTGGCGCTGGGGTTGGAGCTTGCGGAGGCCTACAAAG
ATTATGGAGACTATGCACAGGCGGCTTTGAAGCACGCGCAACTTGCCTTG
GGCTTGAAGGAGGGAGGGAGGGGGGGGAGCGAGGGAGAGACTGGCGGCAT
CAGTGCTGTGGCATTTGCTCGTGCCCTACTCACTGCTGCTGCCGCCTCCT
CCTCTCTTGGCTCTTCCCTCGCTCCTTCTCCCTTGGCGCATTACGTGTCT
TTGCTGTTGGATCTTTTGGAGGCGGATGGAGGGAAGGAAGGAGGGAAGGA
GGGGGAGTTGTTCCGGTTGTTGTCGTCGAGGTACCAGCCTGTGTTGAGGC
GGGATCCTTTGTTTGAGAAGTGGGTGGGGAGAATAGCAGAGGTGGGTTTT
GGACTGTTGCCGCCCGTGAACCCGATGCAGGCGTTGATGAATAGTATGAT
GGGAGGCCTAGGAGGGGGAGGGGGAGGGGCAGGGATGGGCAGTTTGCTTG
GGAACATGCTGGGGGGAGGGGCGGGGGGGAGGAGGGGGGTTATTGGGGCA
ATTGGGCGGATTGGGATTCTAGAAGGAGAAGGACTGAGTGGGAGGGAGGG
AGGGACGGTCGAAGGCAAAGAGGCCTGGCAATCCAGTCTGACGCTATCAG
GATCGAAAGCGATCTTCCAAAGCTTCATGCTCAAGCTGTCACAGGAATAA
AATCCTGCATACACCTCCTCACCACCACGCACGTCTGTCCCTAAGCAATG
TAAAGCAGGCCCCCCTTCATGTCAAACACCAGTCTTCCCCCCCTCCCTCC
CTCCAACAAATCCAACCCTACAACCATGGCCGGCGTCTCCAATAAGCCCA
ATTTTGCCAATCCTGGTACATCTGCAATGGCCAGATTCTTCCCCCCCGTG
TGATTTG back to topprotein sequence of jgi.p|Nanoce1779_2|669009 >mRNA_2396-protein ID=mRNA_2396-protein|Name=jgi.p|Nanoce1779_2|669009|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MPRRTGQRSSGSSDDAGSNGQVLRLQQQIRDGETYEALQTTRALFARMER
SGKRGGGGEARAILLKVASTLAEAGEFKSALDLARLYMTNNKRENGSTAA
AGGGGAAASGNRVEELSAKEARETAAIPSSSLSKTETEEEDHPSWIPHRF
ATGGRVAMLSLARMLPQGSKERVSLLKGITRWAVEEQKQQQLEEGEEEEE
GLALGLELAEAYKDYGDYAQAALKHAQLALGLKEGGRGGSEGETGGISAV
AFARALLTAAAASSSLGSSLAPSPLAHYVSLLLDLLEADGGKEGGKEGEL
FRLLSSRYQPVLRRDPLFEKWVGRIAEVGFGLLPPVNPMQALMNSMMGGL
GGGGGGAGMGSLLGNMLGGGAGGRRGVIGAIGRIGILEGEGLSGREGGTV
EGKEAWQSSLTLSGSKAIFQSFMLKLSQE* back to topmRNA from alignment at scaffold_5:234754..237603- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2396 ID=mRNA_2396|Name=jgi.p|Nanoce1779_2|669009|organism=Nannochloropsis oceanica|type=mRNA|length=2850bp|location=Sequence derived from alignment at scaffold_5:234754..237603- (Nannochloropsis oceanica)
CACCTATCTCGCTCCCCCTTCTCGCTGTCCTTCTCGGTGGGTGCACGCCG
CGCTCCCTGCCTGCCTGTTGTGTGTGTATTCGTGCAGGATGAAGGGATGG
TGAGGGGATGAGGGGGAAGGGGTAGATGAGTGGCTGATTGCAGGCACTAC
GGACGGAGGCCCGAGTTGAGCTCCATGTCGTGCTTCTTCAAGCCTTAGTT
GGTCTTCCGAGGGCAAAACACACGCCGGCTGAGACCCTCTTCCGCCTGTA
GCAGACCAGAAGGGTGGAAAAGAGGCGTGAGATCAAATATTGCCTAGCTT
TGGGCTTGCGTGGGCGGAGACAGAGTGGGTGGCGTGGACTACCAAGCCCC
AAAAGTCATGGCCCGGGGAAGAAGAGGAGTCGTTATGGCCCTTAGCTAGT
CGCCCGCCCTCCGCGGCGTTTGTATCACTGCATATCAGCCCTGAACGAGA
AGGAGGAGAAGAGGAGTAGTGTAGAGATACCTGAGATTTATGTCCATGTG
GTGAGGAGTCTGTGTGTGAATTGAGGCCATAGCCAATGAGGGCAGGACTC
AATTTGACTTGGTGCCCTCGTACACAACACGGACTCGTCGGTCGAGCGAT
ACTTGGATCAATCCTCATCATACCAATGCACATTATTGCTCGTCTCCTTG
CTGAAATTCGTTAGATTACACGGCCATCACCTATTGAACAATTAGACAGG
CCTCCAGCGAACGAGCACCAGGGCTTGTCGTTTTTGGGTGGCCAGCATTT
TACCGTCTCCACTCGTTCAACCGGCCAGCAGCAGCACTTAGCTTCGGGGC
CTTGTTCTATTTCGACGCACTCCTAGCCTCCCACACACCACCACGCTAGC
CACACCCGTCATGCCTCGTCGAACCGGTCAACGCAGCAGTGGTAGCAGCG
ATGATGCTGGGTCGAATGGACAGGTCTTGCGCTTGCAACAGCAGATTAGG
GATGGGGAGACCTACGAGGCTCTCCAGACGACACGGGCTCTCTTTGCCCG
GATGGAACGCAGTGGCAAACGTGGAGGCGGAGGGGAGGCACGTGCGATCC
TTTTGAAAGTGGCCAGTACACTGGCCGAGGCGGGGGAGTTCAAGTCGGCC
TTGGATTTGGCGCGTTTGTACATGACGAATAATAAGAGGGAAAATGGTTC
GACTGCTGCTGCTGGTGGTGGTGGTGCCGCTGCGAGCGGTAATCGAGTAG
AAGAATTGAGTGCCAAAGAAGCTAGAGAAACTGCCGCCATACCTTCTTCT
TCCTTATCAAAAACGGAAACAGAAGAGGAGGATCACCCTTCCTGGATACC
CCATCGCTTTGCAACGGGGGGACGGGTGGCCATGTTGTCACTTGCGCGGA
TGCTGCCACAAGGATCGAAGGAACGTGTGTCGTTGCTAAAAGGCATCACG
CGGTGGGCCGTGGAGGAACAGAAGCAGCAGCAGCTGGAGGAAGGTGAGGA
AGAAGAGGAGGGTTTGGCGCTGGGGTTGGAGCTTGCGGAGGCCTACAAAG
ATTATGGAGACTATGCACAGGCGGCTTTGAAGCACGCGCAACTTGCCTTG
GGCTTGAAGGAGGGAGGGAGGGGGGGGAGCGAGGGAGAGACTGGCGGCAT
CGTATGTGGGGTTACTGGAGCATTGGAGCGAGGACGGGTACAAGGGGGAG
AAAGACTTGTTTGTAGCTCGAGCAGCTATGCACGTCCTGGCATCTTCCCC
CCCTTCCTCCTTCAAGAGTGCTGTGGCATTTGCTCGTGCCCTACTCACTG
CTGCTGCCGCCTCCTCCTCTCTTGGCTCTTCCCTCGCTCCTTCTCCCTTG
GCGCATTACGTGTCTTTGCTGTTGGATCTTTTGGAGGCGGATGGAGGGAA
GGAAGGAGGGAAGGAGGGGGAGTTGTTCCGGTTGTTGTCGTCGAGGTACC
AGCCTGTGTTGAGGCGGGATCCTTTGTTTGAGAAGTGGGTGGGGAGAATA
GCAGAGGTGGGTTTTGGACTGTTGCCGCCCGTGAACCCGATGCAGGCGTT
GATGAATAGTATGATGGGAGGCCTAGGAGGGGGAGGGGGAGGGGCAGGGA
TGGGCAGTTTGCTTGGGAACATGCTGGGGGGAGGGGCGGGGGGGAGGAGG
GGGGTTATTGGGGCAATTGGGCGGATTGGGATTCTAGAAGGAGAAGGACT
GAGTGGGAGGGAGGGAGGGACGGTCGAAGGCAAAGAGGCCTGGTTTCCCA
GCAACAGCAAGAAAGGAGATATCGTAGATAATGTGCGTGCATGATTCTGC
TTTCTCGTCACACTGGTTTCTGTGTCATCTATTGCTTGCTCCTATTTTAT
TCATTTAAAGAGACTCCGTGAAATGCCAAACAATTACTTTTATGCCCTTC
CTCCTCCCCCCCTCCCTTTCCCCCTTTCTCCCTCCCCCCCCCCCTTCCCG
CCTTCCCGCCTTCCCTCCCTCCTTCCCTCCTTCCCTCTCTCCTTCCCTCC
TTCCCTCCTTCCCCCTTCCTTCCCCCCTTCCCTCCCTCCTACCCCTTTCC
CCCCCTTCTCCCCCCTTCCCTCCCTCCCTCCCTTCTTCCCCCCTTCTGGC
CTTCCCCCCCTCCCTCCCAGGCAATCCAGTCTGACGCTATCAGGATCGAA
AGCGATCTTCCAAAGCTTCATGCTCAAGCTGTCACAGGAATAAAATCCTG
CATACACCTCCTCACCACCACGCACGTCTGTCCCTAAGCAATGTAAAGCA
GGCCCCCCTTCATGTCAAACACCAGTCTTCCCCCCCTCCCTCCCTCCAAC
AAATCCAACCCTACAACCATGGCCGGCGTCTCCAATAAGCCCAATTTTGC
CAATCCTGGTACATCTGCAATGGCCAGATTCTTCCCCCCCGTGTGATTTG
back to topCoding sequence (CDS) from alignment at scaffold_5:234754..237603- >mRNA_2396 ID=mRNA_2396|Name=jgi.p|Nanoce1779_2|669009|organism=Nannochloropsis oceanica|type=CDS|length=3870bp|location=Sequence derived from alignment at scaffold_5:234754..237603- (Nannochloropsis oceanica)
GCAATCCAGTCTGACGCTATCAGGATCGAAAGCGATCTTCCAAAGCTTCA
TGCTCAAGCTGTCACAGGAATAAAGTGCTGTGGCATTTGCTCGTGCCCTA
CTCACTGCTGCTGCCGCCTCCTCCTCTCTTGGCTCTTCCCTCGCTCCTTC
TCCCTTGGCGCATTACGTGTCTTTGCTGTTGGATCTTTTGGAGGCGGATG
GAGGGAAGGAAGGAGGGAAGGAGGGGGAGTTGTTCCGGTTGTTGTCGTCG
AGGTACCAGCCTGTGTTGAGGCGGGATCCTTTGTTTGAGAAGTGGGTGGG
GAGAATAGCAGAGGTGGGTTTTGGACTGTTGCCGCCCGTGAACCCGATGC
AGGCGTTGATGAATAGTATGATGGGAGGCCTAGGAGGGGGAGGGGGAGGG
GCAGGGATGGGCAGTTTGCTTGGGAACATGCTGGGGGGAGGGGCGGGGGG
GAGGAGGGGGGTTATTGGGGCAATTGGGCGGATTGGGATTCTAGAAGGAG
AAGGACTGAGTGGGAGGGAGGGAGGGACGGTCGAAGGCAAAGAGGCCTGA
TGCCTCGTCGAACCGGTCAACGCAGCAGTGGTAGCAGCGATGATGCTGGG
TCGAATGGACAGGTCTTGCGCTTGCAACAGCAGATTAGGGATGGGGAGAC
CTACGAGGCTCTCCAGACGACACGGGCTCTCTTTGCCCGGATGGAACGCA
GTGGCAAACGTGGAGGCGGAGGGGAGGCACGTGCGATCCTTTTGAAAGTG
GCCAGTACACTGGCCGAGGCGGGGGAGTTCAAGTCGGCCTTGGATTTGGC
GCGTTTGTACATGACGAATAATAAGAGGGAAAATGGTTCGACTGCTGCTG
CTGGTGGTGGTGGTGCCGCTGCGAGCGGTAATCGAGTAGAAGAATTGAGT
GCCAAAGAAGCTAGAGAAACTGCCGCCATACCTTCTTCTTCCTTATCAAA
AACGGAAACAGAAGAGGAGGATCACCCTTCCTGGATACCCCATCGCTTTG
CAACGGGGGGACGGGTGGCCATGTTGTCACTTGCGCGGATGCTGCCACAA
GGATCGAAGGAACGTGTGTCGTTGCTAAAAGGCATCACGCGGTGGGCCGT
GGAGGAACAGAAGCAGCAGCAGCTGGAGGAAGGTGAGGAAGAAGAGGAGG
GTTTGGCGCTGGGGTTGGAGCTTGCGGAGGCCTACAAAGATTATGGAGAC
TATGCACAGGCGGCTTTGAAGCACGCGCAACTTGCCTTGGGCTTGAAGGA
GGGAGGGAGGGGGGGGAGCGAGGGAGAGACTGGCGGCATCGCAATCCAGT
CTGACGCTATCAGGATCGAAAGCGATCTTCCAAAGCTTCATGCTCAAGCT
GTCACAGGAATAAAGTGCTGTGGCATTTGCTCGTGCCCTACTCACTGCTG
CTGCCGCCTCCTCCTCTCTTGGCTCTTCCCTCGCTCCTTCTCCCTTGGCG
CATTACGTGTCTTTGCTGTTGGATCTTTTGGAGGCGGATGGAGGGAAGGA
AGGAGGGAAGGAGGGGGAGTTGTTCCGGTTGTTGTCGTCGAGGTACCAGC
CTGTGTTGAGGCGGGATCCTTTGTTTGAGAAGTGGGTGGGGAGAATAGCA
GAGGTGGGTTTTGGACTGTTGCCGCCCGTGAACCCGATGCAGGCGTTGAT
GAATAGTATGATGGGAGGCCTAGGAGGGGGAGGGGGAGGGGCAGGGATGG
GCAGTTTGCTTGGGAACATGCTGGGGGGAGGGGCGGGGGGGAGGAGGGGG
GTTATTGGGGCAATTGGGCGGATTGGGATTCTAGAAGGAGAAGGACTGAG
TGGGAGGGAGGGAGGGACGGTCGAAGGCAAAGAGGCCTGATGCCTCGTCG
AACCGGTCAACGCAGCAGTGGTAGCAGCGATGATGCTGGGTCGAATGGAC
AGGTCTTGCGCTTGCAACAGCAGATTAGGGATGGGGAGACCTACGAGGCT
CTCCAGACGACACGGGCTCTCTTTGCCCGGATGGAACGCAGTGGCAAACG
TGGAGGCGGAGGGGAGGCACGTGCGATCCTTTTGAAAGTGGCCAGTACAC
TGGCCGAGGCGGGGGAGTTCAAGTCGGCCTTGGATTTGGCGCGTTTGTAC
ATGACGAATAATAAGAGGGAAAATGGTTCGACTGCTGCTGCTGGTGGTGG
TGGTGCCGCTGCGAGCGGTAATCGAGTAGAAGAATTGAGTGCCAAAGAAG
CTAGAGAAACTGCCGCCATACCTTCTTCTTCCTTATCAAAAACGGAAACA
GAAGAGGAGGATCACCCTTCCTGGATACCCCATCGCTTTGCAACGGGGGG
ACGGGTGGCCATGTTGTCACTTGCGCGGATGCTGCCACAAGGATCGAAGG
AACGTGTGTCGTTGCTAAAAGGCATCACGCGGTGGGCCGTGGAGGAACAG
AAGCAGCAGCAGCTGGAGGAAGGTGAGGAAGAAGAGGAGGGTTTGGCGCT
GGGGTTGGAGCTTGCGGAGGCCTACAAAGATTATGGAGACTATGCACAGG
CGGCTTTGAAGCACGCGCAACTTGCCTTGGGCTTGAAGGAGGGAGGGAGG
GGGGGGAGCGAGGGAGAGACTGGCGGCATCGCAATCCAGTCTGACGCTAT
CAGGATCGAAAGCGATCTTCCAAAGCTTCATGCTCAAGCTGTCACAGGAA
TAAAGTGCTGTGGCATTTGCTCGTGCCCTACTCACTGCTGCTGCCGCCTC
CTCCTCTCTTGGCTCTTCCCTCGCTCCTTCTCCCTTGGCGCATTACGTGT
CTTTGCTGTTGGATCTTTTGGAGGCGGATGGAGGGAAGGAAGGAGGGAAG
GAGGGGGAGTTGTTCCGGTTGTTGTCGTCGAGGTACCAGCCTGTGTTGAG
GCGGGATCCTTTGTTTGAGAAGTGGGTGGGGAGAATAGCAGAGGTGGGTT
TTGGACTGTTGCCGCCCGTGAACCCGATGCAGGCGTTGATGAATAGTATG
ATGGGAGGCCTAGGAGGGGGAGGGGGAGGGGCAGGGATGGGCAGTTTGCT
TGGGAACATGCTGGGGGGAGGGGCGGGGGGGAGGAGGGGGGTTATTGGGG
CAATTGGGCGGATTGGGATTCTAGAAGGAGAAGGACTGAGTGGGAGGGAG
GGAGGGACGGTCGAAGGCAAAGAGGCCTGATGCCTCGTCGAACCGGTCAA
CGCAGCAGTGGTAGCAGCGATGATGCTGGGTCGAATGGACAGGTCTTGCG
CTTGCAACAGCAGATTAGGGATGGGGAGACCTACGAGGCTCTCCAGACGA
CACGGGCTCTCTTTGCCCGGATGGAACGCAGTGGCAAACGTGGAGGCGGA
GGGGAGGCACGTGCGATCCTTTTGAAAGTGGCCAGTACACTGGCCGAGGC
GGGGGAGTTCAAGTCGGCCTTGGATTTGGCGCGTTTGTACATGACGAATA
ATAAGAGGGAAAATGGTTCGACTGCTGCTGCTGGTGGTGGTGGTGCCGCT
GCGAGCGGTAATCGAGTAGAAGAATTGAGTGCCAAAGAAGCTAGAGAAAC
TGCCGCCATACCTTCTTCTTCCTTATCAAAAACGGAAACAGAAGAGGAGG
ATCACCCTTCCTGGATACCCCATCGCTTTGCAACGGGGGGACGGGTGGCC
ATGTTGTCACTTGCGCGGATGCTGCCACAAGGATCGAAGGAACGTGTGTC
GTTGCTAAAAGGCATCACGCGGTGGGCCGTGGAGGAACAGAAGCAGCAGC
AGCTGGAGGAAGGTGAGGAAGAAGAGGAGGGTTTGGCGCTGGGGTTGGAG
CTTGCGGAGGCCTACAAAGATTATGGAGACTATGCACAGGCGGCTTTGAA
GCACGCGCAACTTGCCTTGGGCTTGAAGGAGGGAGGGAGGGGGGGGAGCG
AGGGAGAGACTGGCGGCATC back to top
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