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Properties
| Property Name | Value |
|---|
| TranscriptId | 580294 |
| Track | FilteredModels2 |
| ProteinId | 580208 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:231332..232159 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2394 ID=mRNA_2394|Name=jgi.p|Nanoce1779_2|580208|organism=Nannochloropsis oceanica|type=mRNA|length=828bp
GCCACTTTTGATATGCTGTAATTTTGGGCGCTGGCTGCTGAATGAAGGCG
AAGGACCCGAGACCTGTCTGTATACAAATGAGTGCGTGGTAGAGGTAAGT
GAGAATGTCAGAAAGGCATTCCTTGTGGTCAATTTGAGTACTACGGGCTC
GGACCTGGGAGGGTGGAGCGACGCGGCCTGGACTCTGAGGGTCAAGCTGG
TCAAGCCTTCGTCCGACTCGGACGCGGAGGAGCGCGCAAAGATGCGACGT
TCCCTTCCTTCATGCATTTTCTCTTTCTGTGCATTCACGATCCCGTGACA
ATCTCACGCATGTCCTACTCACTCCACAACACAGTTTGCACACACCGGCC
AGTCCTCAGGCCGACCAGGCCTATCGATAAGCCAATCCCTCCTAGTCATC
ATCTCATGGCCCTGCCCCCTAACCAAACGCTGGACAAATGGAAGCAAGCG
CACAACACCTCCGGTGGCCCCATCGCCAGCACCAAGCAACGTAGGCTGCA
GGCGTTGCTGGATGAAGTCGACCCGTCCGGCACGTTTCGTCTGGACGGCG
AGGCGGAGGAGATAGTGTTGTATCTGATCGAGCAGTTCATGACTTCCGTG
GCGACGCACTCGGCACAGCTCGCGAGGCATCGAGGGGCCACTGCGATAGA
GCATAGTGACGTGGCGTTTACGCTCTTGAAACAGTGGAATATGGCCGTAC
CTGCCATTGGAACGTCGGCGTCAAGGGGGGGAGGCGGGGGCGGAGGAGGA
GGAAAGAAGGGGGCGAAGAGAAAGTCGAGGTGAGAGAGAGAGGGAGCATG
TACAAAGAAGACAAAGAAAAGGGCAATA back to topprotein sequence of jgi.p|Nanoce1779_2|580208 >mRNA_2394-protein ID=mRNA_2394-protein|Name=jgi.p|Nanoce1779_2|580208|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MHFLFLCIHDPVTISRMSYSLHNTVCTHRPVLRPTRPIDKPIPPSHHLMA
LPPNQTLDKWKQAHNTSGGPIASTKQRRLQALLDEVDPSGTFRLDGEAEE
IVLYLIEQFMTSVATHSAQLARHRGATAIEHSDVAFTLLKQWNMAVPAIG
TSASRGGGGGGGGGKKGAKRKSR* back to topmRNA from alignment at scaffold_5:231332..232159- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2394 ID=mRNA_2394|Name=jgi.p|Nanoce1779_2|580208|organism=Nannochloropsis oceanica|type=mRNA|length=828bp|location=Sequence derived from alignment at scaffold_5:231332..232159- (Nannochloropsis oceanica)
GCCACTTTTGATATGCTGTAATTTTGGGCGCTGGCTGCTGAATGAAGGCG
AAGGACCCGAGACCTGTCTGTATACAAATGAGTGCGTGGTAGAGGTAAGT
GAGAATGTCAGAAAGGCATTCCTTGTGGTCAATTTGAGTACTACGGGCTC
GGACCTGGGAGGGTGGAGCGACGCGGCCTGGACTCTGAGGGTCAAGCTGG
TCAAGCCTTCGTCCGACTCGGACGCGGAGGAGCGCGCAAAGATGCGACGT
TCCCTTCCTTCATGCATTTTCTCTTTCTGTGCATTCACGATCCCGTGACA
ATCTCACGCATGTCCTACTCACTCCACAACACAGTTTGCACACACCGGCC
AGTCCTCAGGCCGACCAGGCCTATCGATAAGCCAATCCCTCCTAGTCATC
ATCTCATGGCCCTGCCCCCTAACCAAACGCTGGACAAATGGAAGCAAGCG
CACAACACCTCCGGTGGCCCCATCGCCAGCACCAAGCAACGTAGGCTGCA
GGCGTTGCTGGATGAAGTCGACCCGTCCGGCACGTTTCGTCTGGACGGCG
AGGCGGAGGAGATAGTGTTGTATCTGATCGAGCAGTTCATGACTTCCGTG
GCGACGCACTCGGCACAGCTCGCGAGGCATCGAGGGGCCACTGCGATAGA
GCATAGTGACGTGGCGTTTACGCTCTTGAAACAGTGGAATATGGCCGTAC
CTGCCATTGGAACGTCGGCGTCAAGGGGGGGAGGCGGGGGCGGAGGAGGA
GGAAAGAAGGGGGCGAAGAGAAAGTCGAGGTGAGAGAGAGAGGGAGCATG
TACAAAGAAGACAAAGAAAAGGGCAATA back to topCoding sequence (CDS) from alignment at scaffold_5:231332..232159- >mRNA_2394 ID=mRNA_2394|Name=jgi.p|Nanoce1779_2|580208|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at scaffold_5:231332..232159- (Nannochloropsis oceanica)
ATGCATTTTCTCTTTCTGTGCATTCACGATCCCGTGACAATCTCACGCAT
GTCCTACTCACTCCACAACACAGTTTGCACACACCGGCCAGTCCTCAGGC
CGACCAGGCCTATCGATAAGCCAATCCCTCCTAGTCATCATCTCATGGCC
CTGCCCCCTAACCAAACGCTGGACAAATGGAAGCAAGCGCACAACACCTC
CGGTGGCCCCATCGCCAGCACCAAGCAACGTAGGCTGCAGGCGTTGCTGG
ATGAAGTCGACCCGTCCGGCACGTTTCGTCTGGACGGCGAGGCGGAGGAG
ATAGTGTTGTATCTGATCGAGCAGTTCATGACTTCCGTGGCGACGCACTC
GGCACAGCTCGCGAGGCATCGAGGGGCCACTGCGATAGAGCATAGTGACG
TGGCGTTTACGCTCTTGAAACAGTGGAATATGGCCGTACCTGCCATTGGA
ACGTCGGCGTCAAGGGGGGGAGGCGGGGGCGGAGGAGGAGGAAAGAAGGG
GGCGAAGAGAAAGTCGAGGTGA back to top
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