jgi.p|Nanoce1779_2|580203, mRNA_2392 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580203
Unique NamemRNA_2392
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1238
Alignment locationscaffold_5:225313..226915 -

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Properties
Property NameValue
TranscriptId580289
TrackFilteredModels2
ProteinId580203
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:225313..226915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580203gene_2392Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580203mRNA_2392-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2392CDS_2392Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2392 ID=mRNA_2392|Name=jgi.p|Nanoce1779_2|580203|organism=Nannochloropsis oceanica|type=mRNA|length=1238bp
GAAACCGACGTTTCAAAACGGCTGCAGTTCGACCTCAAGGAAGACCTCCC
CACCCTGGGAGCTGAATCTAAACCAACCCTGCCATGATCCACACAGCTTA
TGCAAACGCATCCATTAGCTGGGTCCGAGAACGGCAGGAGGAGGAGGAGG
AGGAAATGAACGAGGAAATGAACGAGGAAATGGGGCTGGAATCACGGGCC
GAGTTGGTGCAGATATACAAAGAGGGCACGACAATCAAGGAGCTCCGAGC
CGCACGTGATGCTTGTCGAACGGGGGGCAAGGGAGCGCAAAACAGGCTCC
TAGAGAAAGCCGACGACGTGTTAGAGCTGCTGCAGATTATCACTATCCAC
TATTCTCGGCCAGTAAACAATACCATTAGCCCTGCTGAGGCTGAAGAAGA
GAGAAGCGCCGTACGCAAGCTAGCGTTGGCCGCGCTCCAATTCCTGGCAA
ATCTTACGGCAGGGAACCCACGGACGGCATATTGGGTGTTTCAAAAATCC
TATGATGGTCGATTCTTGGAGTATCTGGAGACATTTTCGGAGGACCGGGA
TTTGTTGATGTGCACGTGTGTCATCATCCACAATAACCTGGCATGTGCAG
TGGAGAAAAGTTGTGCAGTGGAAAAATTGTTAGAGGATGGTGCGCTCATT
TGCAAGCTGATGCGCATTTTATTGCCACACTCGGCCCTTCCGCCAACACC
TTCTTCCTCCTTAGGAGAGGAAAAGAATGACCCGGTCTTTGAATGGGTAT
ACCTAGTCCTGCTCAAGATCCTTGAGGCAGGAAAGGGAAAGGAGGCCTTT
ATGAAAACCGGGCTGGACGAAGACATGCTACAGAACGCCTTGGTACTTTT
GGAGCCAGGAACCGAAAGGGAACATTCACCAGGCTACGACCGTGTCATGC
CGCATCCGTCTCTTCTTTCTGTACCACCACTTTGGCACGGCCACGCTTCA
GCAGGAGCGTTGACGCCCATCAGAAAGAGGGAAACGGAGGAAAAAAGGAA
AGAGGAGTGAGAGCACCGACCTTGCTGGTGACAAAGGACGATGGGGCCAT
GTTGGTGGGGATGGTGAGTCGTGTGAAAACATTCTTGAAATACCGATCCC
TTTATCTGCCCAGAACGAGTGTAATAGGAGCCGCAGGCAGTACCCAGCAG
CAGCAGCAACAGCAGCAGCAGCAGCAGCAGTGTGCAGAGGAAATAATGAT
GGAAGAAGCTGTTGCAACAGTCGTGCGTCTCCTGGCGG
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protein sequence of jgi.p|Nanoce1779_2|580203

>mRNA_2392-protein ID=mRNA_2392-protein|Name=jgi.p|Nanoce1779_2|580203|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MIHTAYANASISWVRERQEEEEEEMNEEMNEEMGLESRAELVQIYKEGTT
IKELRAARDACRTGGKGAQNRLLEKADDVLELLQIITIHYSRPVNNTISP
AEAEEERSAVRKLALAALQFLANLTAGNPRTAYWVFQKSYDGRFLEYLET
FSEDRDLLMCTCVIIHNNLACAVEKSCAVEKLLEDGALICKLMRILLPHS
ALPPTPSSSLGEEKNDPVFEWVYLVLLKILEAGKGKEAFMKTGLDEDMLQ
NALVLLEPGTEREHSPGYDRVMPHPSLLSVPPLWHGHASAGALTPIRKRE
TEEKRKEE*
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mRNA from alignment at scaffold_5:225313..226915-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2392 ID=mRNA_2392|Name=jgi.p|Nanoce1779_2|580203|organism=Nannochloropsis oceanica|type=mRNA|length=1603bp|location=Sequence derived from alignment at scaffold_5:225313..226915- (Nannochloropsis oceanica)
GAAACCGACGTTTCAAAACGGCTGCAGTTCGACCTCAAGGAAGACCTCCC
CACCCTGGGAGCTGAATCTAAACCAACCCTGCCATGATCCACACAGCTTA
TGCAAACGCATCCATTAGCTGGGTCCGAGAACGGCAGGAGGAGGAGGAGG
AGGAAATGAACGAGGAAATGAACGAGGAAATGGGGCTGGAATCACGGGCC
GAGTTGGTGCAGATATACAAAGAGGGCACGACAATCAAGGAGCTCCGAGC
CGCACGTGATGCTTGTCGAACGGGGGGCAAGGTATGTATGTACAATAGGT
GGATGAATGGATACATAATGCAAGGGATTGCGCTCGGCTTGATCTGTTGT
CTGAAAGCAAACATTATCTTGTACAGGCAATGCTGCTTCACCCCAAGCCG
CACGCAGCACTCTCACTCACAGCCCCTCCAACCCTATATATACCCACCCA
TTCCTGAAATCCTAGGGAGCGCAAAACAGGCTCCTAGAGAAAGCCGACGA
CGTGTTAGAGCTGCTGCAGATTATCACTATCCACTATTCTCGGCCAGTAA
ACAATACCATTAGCCCTGCTGAGGCTGAAGAAGAGAGAAGCGCCGTACGC
AAGCTAGCGTTGGCCGCGCTCCAATTCCTGGCAAATCTTACGGCAGGGAA
CCCACGGACGGCATATTGGGTGTTTCAAAAATCCTATGATGGTCGATTCT
TGGAGTATCTGGAGACATTTTCGGAGGACCGGGATTTGTTGATGTGCACG
TGTGTCATCATCCACAATAACCTGGCATGTGCAGTGGAGAAAAGTTGTGC
AGTGGAAAAATTGTTAGAGGATGGTGCGCTCATTTGCAAGCTGATGCGCA
TTTTATTGCCACACTCGGCCCTTCCGCCAACACCTTCTTCCTCCTTAGGA
GAGGAAAAGAATGACCCGGTCTTTGAATGGGTATACCTAGTCCTGCTCAA
GATCCTTGAGGCAGGAAAGGGAAAGGAGGCCTTTATGAAAACCGGGCTGG
ACGAAGACATGCTACAGAACGCCTTGGTACTTTTGGAGCCAGGAACCGAA
AGGGAACATTCACCAGGCTACGACCGTGTCATGCCGCATCCGTCTCTTCT
TTCTGTACCACCACTTTGGCACGGCCACGGTGAGGAACCTGCAAAGAAGG
GCCGGAAGGAGGGAGGGAGGGACGGCGGAAAGGAAGCAGGGGAGGGTAAT
GTCGTGATGACACACCTCGGACCACCCCTATCTGTGTTTACGGCGGAACA
GTTGGTGTTTTTGAATCTTTTAGAGCACTCATTGACTGACACGTATGTGC
ATAAACCCAGCTTCAGCAGGAGCGTTGACGCCCATCAGAAAGAGGGAAAC
GGAGGAAAAAAGGAAAGAGGAGTGAGAGCACCGACCTTGCTGGTGACAAA
GGACGATGGGGCCATGTTGGTGGGGATGGTGAGTCGTGTGAAAACATTCT
TGAAATACCGATCCCTTTATCTGCCCAGAACGAGTGTAATAGGAGCCGCA
GGCAGTACCCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGTGTGC
AGAGGAAATAATGATGGAAGAAGCTGTTGCAACAGTCGTGCGTCTCCTGG
CGG
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Coding sequence (CDS) from alignment at scaffold_5:225313..226915-

>mRNA_2392 ID=mRNA_2392|Name=jgi.p|Nanoce1779_2|580203|organism=Nannochloropsis oceanica|type=CDS|length=2781bp|location=Sequence derived from alignment at scaffold_5:225313..226915- (Nannochloropsis oceanica)
CTTCAGCAGGAGCGTTGACGCCCATCAGAAAGAGGGAAACGGAGGAAAAA
AGGAAAGAGGAGTGAGGAGCGCAAAACAGGCTCCTAGAGAAAGCCGACGA
CGTGTTAGAGCTGCTGCAGATTATCACTATCCACTATTCTCGGCCAGTAA
ACAATACCATTAGCCCTGCTGAGGCTGAAGAAGAGAGAAGCGCCGTACGC
AAGCTAGCGTTGGCCGCGCTCCAATTCCTGGCAAATCTTACGGCAGGGAA
CCCACGGACGGCATATTGGGTGTTTCAAAAATCCTATGATGGTCGATTCT
TGGAGTATCTGGAGACATTTTCGGAGGACCGGGATTTGTTGATGTGCACG
TGTGTCATCATCCACAATAACCTGGCATGTGCAGTGGAGAAAAGTTGTGC
AGTGGAAAAATTGTTAGAGGATGGTGCGCTCATTTGCAAGCTGATGCGCA
TTTTATTGCCACACTCGGCCCTTCCGCCAACACCTTCTTCCTCCTTAGGA
GAGGAAAAGAATGACCCGGTCTTTGAATGGGTATACCTAGTCCTGCTCAA
GATCCTTGAGGCAGGAAAGGGAAAGGAGGCCTTTATGAAAACCGGGCTGG
ACGAAGACATGCTACAGAACGCCTTGGTACTTTTGGAGCCAGGAACCGAA
AGGGAACATTCACCAGGCTACGACCGTGTCATGCCGCATCCGTCTCTTCT
TTCTGTACCACCACTTTGGCACGGCCACGATGATCCACACAGCTTATGCA
AACGCATCCATTAGCTGGGTCCGAGAACGGCAGGAGGAGGAGGAGGAGGA
AATGAACGAGGAAATGAACGAGGAAATGGGGCTGGAATCACGGGCCGAGT
TGGTGCAGATATACAAAGAGGGCACGACAATCAAGGAGCTCCGAGCCGCA
CGTGATGCTTGTCGAACGGGGGGCAAGCTTCAGCAGGAGCGTTGACGCCC
ATCAGAAAGAGGGAAACGGAGGAAAAAAGGAAAGAGGAGTGAGGAGCGCA
AAACAGGCTCCTAGAGAAAGCCGACGACGTGTTAGAGCTGCTGCAGATTA
TCACTATCCACTATTCTCGGCCAGTAAACAATACCATTAGCCCTGCTGAG
GCTGAAGAAGAGAGAAGCGCCGTACGCAAGCTAGCGTTGGCCGCGCTCCA
ATTCCTGGCAAATCTTACGGCAGGGAACCCACGGACGGCATATTGGGTGT
TTCAAAAATCCTATGATGGTCGATTCTTGGAGTATCTGGAGACATTTTCG
GAGGACCGGGATTTGTTGATGTGCACGTGTGTCATCATCCACAATAACCT
GGCATGTGCAGTGGAGAAAAGTTGTGCAGTGGAAAAATTGTTAGAGGATG
GTGCGCTCATTTGCAAGCTGATGCGCATTTTATTGCCACACTCGGCCCTT
CCGCCAACACCTTCTTCCTCCTTAGGAGAGGAAAAGAATGACCCGGTCTT
TGAATGGGTATACCTAGTCCTGCTCAAGATCCTTGAGGCAGGAAAGGGAA
AGGAGGCCTTTATGAAAACCGGGCTGGACGAAGACATGCTACAGAACGCC
TTGGTACTTTTGGAGCCAGGAACCGAAAGGGAACATTCACCAGGCTACGA
CCGTGTCATGCCGCATCCGTCTCTTCTTTCTGTACCACCACTTTGGCACG
GCCACGATGATCCACACAGCTTATGCAAACGCATCCATTAGCTGGGTCCG
AGAACGGCAGGAGGAGGAGGAGGAGGAAATGAACGAGGAAATGAACGAGG
AAATGGGGCTGGAATCACGGGCCGAGTTGGTGCAGATATACAAAGAGGGC
ACGACAATCAAGGAGCTCCGAGCCGCACGTGATGCTTGTCGAACGGGGGG
CAAGCTTCAGCAGGAGCGTTGACGCCCATCAGAAAGAGGGAAACGGAGGA
AAAAAGGAAAGAGGAGTGAGGAGCGCAAAACAGGCTCCTAGAGAAAGCCG
ACGACGTGTTAGAGCTGCTGCAGATTATCACTATCCACTATTCTCGGCCA
GTAAACAATACCATTAGCCCTGCTGAGGCTGAAGAAGAGAGAAGCGCCGT
ACGCAAGCTAGCGTTGGCCGCGCTCCAATTCCTGGCAAATCTTACGGCAG
GGAACCCACGGACGGCATATTGGGTGTTTCAAAAATCCTATGATGGTCGA
TTCTTGGAGTATCTGGAGACATTTTCGGAGGACCGGGATTTGTTGATGTG
CACGTGTGTCATCATCCACAATAACCTGGCATGTGCAGTGGAGAAAAGTT
GTGCAGTGGAAAAATTGTTAGAGGATGGTGCGCTCATTTGCAAGCTGATG
CGCATTTTATTGCCACACTCGGCCCTTCCGCCAACACCTTCTTCCTCCTT
AGGAGAGGAAAAGAATGACCCGGTCTTTGAATGGGTATACCTAGTCCTGC
TCAAGATCCTTGAGGCAGGAAAGGGAAAGGAGGCCTTTATGAAAACCGGG
CTGGACGAAGACATGCTACAGAACGCCTTGGTACTTTTGGAGCCAGGAAC
CGAAAGGGAACATTCACCAGGCTACGACCGTGTCATGCCGCATCCGTCTC
TTCTTTCTGTACCACCACTTTGGCACGGCCACGATGATCCACACAGCTTA
TGCAAACGCATCCATTAGCTGGGTCCGAGAACGGCAGGAGGAGGAGGAGG
AGGAAATGAACGAGGAAATGAACGAGGAAATGGGGCTGGAATCACGGGCC
GAGTTGGTGCAGATATACAAAGAGGGCACGACAATCAAGGAGCTCCGAGC
CGCACGTGATGCTTGTCGAACGGGGGGCAAG
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Synonyms
Publications