jgi.p|Nanoce1779_2|580201, mRNA_2391 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580201
Unique NamemRNA_2391
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length737
Alignment locationscaffold_5:224723..225459 -

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Properties
Property NameValue
TranscriptId580287
TrackFilteredModels2
ProteinId580201
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:224723..225459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580201gene_2391Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580201mRNA_2391-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2391CDS_2391Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2391 ID=mRNA_2391|Name=jgi.p|Nanoce1779_2|580201|organism=Nannochloropsis oceanica|type=mRNA|length=737bp
ACCGATCCCTTTATCTGCCCAGAACGAGTGTAATAGGAGCCGCAGGCAGT
ACCCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGTGTGCAGAGGA
AATAATGATGGAAGAAGCTGTTGCAACAGTCGTGCGTCTCCTGGCGGGAG
TGCTTGGGATGGTGATCGAGGAAGAAGAAGGGGGGGAGGAGGGGCATGTC
GATAAGGAGGCATTACTGGCAAACGGGCTTGTGGGGGTGATCTTGACTCT
ACTCAGACAAGAGGGAGGTCAGGCAGATGGATGCATCCCAGCCATGGACG
CTGTTTCTGCTGTTCCTGCTGCTGCTGCTACAGCGGCTACTGCCGCCGCT
ACTGCTGCTGCTACTGCACGTGAAGGCCGCAAAGCCCAGCTTATCCGTTT
GCTGGGTAATTTGTGTCACCGATGTCGGAGCGCACAGGACGAGGTGCGAA
AGGAGGAAGGGGGGTTGATGTTGGTGTTGAACCACTGTAACGTCGACTCT
TCGAATCCATTTCTGAGGGAATGGGCCTTGTTTTGTATCCGTAATTTGTG
CGAGGGCAACGATGAGAACCAGCGGGTGGTGGGTGAGGTCCAGGTGCAAG
AAGCAGTGCAAACGTCGATGTTGAACGAGGCGGGTCTACGGGCGAAGTTG
GTGGAGGGAGGGGAAGGAGGGGGGCGGGCAAGGGTCATCTTGACCAAAGC
TGATGGACGGGGTGGCGATGGTGGCACATAAAGTAAG
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protein sequence of jgi.p|Nanoce1779_2|580201

>mRNA_2391-protein ID=mRNA_2391-protein|Name=jgi.p|Nanoce1779_2|580201|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MMEEAVATVVRLLAGVLGMVIEEEEGGEEGHVDKEALLANGLVGVILTLL
RQEGGQADGCIPAMDAVSAVPAAAATAATAAATAAATAREGRKAQLIRLL
GNLCHRCRSAQDEVRKEEGGLMLVLNHCNVDSSNPFLREWALFCIRNLCE
GNDENQRVVGEVQVQEAVQTSMLNEAGLRAKLVEGGEGGGRARVILTKAD
GRGGDGGT*
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mRNA from alignment at scaffold_5:224723..225459-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2391 ID=mRNA_2391|Name=jgi.p|Nanoce1779_2|580201|organism=Nannochloropsis oceanica|type=mRNA|length=737bp|location=Sequence derived from alignment at scaffold_5:224723..225459- (Nannochloropsis oceanica)
ACCGATCCCTTTATCTGCCCAGAACGAGTGTAATAGGAGCCGCAGGCAGT
ACCCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGTGTGCAGAGGA
AATAATGATGGAAGAAGCTGTTGCAACAGTCGTGCGTCTCCTGGCGGGAG
TGCTTGGGATGGTGATCGAGGAAGAAGAAGGGGGGGAGGAGGGGCATGTC
GATAAGGAGGCATTACTGGCAAACGGGCTTGTGGGGGTGATCTTGACTCT
ACTCAGACAAGAGGGAGGTCAGGCAGATGGATGCATCCCAGCCATGGACG
CTGTTTCTGCTGTTCCTGCTGCTGCTGCTACAGCGGCTACTGCCGCCGCT
ACTGCTGCTGCTACTGCACGTGAAGGCCGCAAAGCCCAGCTTATCCGTTT
GCTGGGTAATTTGTGTCACCGATGTCGGAGCGCACAGGACGAGGTGCGAA
AGGAGGAAGGGGGGTTGATGTTGGTGTTGAACCACTGTAACGTCGACTCT
TCGAATCCATTTCTGAGGGAATGGGCCTTGTTTTGTATCCGTAATTTGTG
CGAGGGCAACGATGAGAACCAGCGGGTGGTGGGTGAGGTCCAGGTGCAAG
AAGCAGTGCAAACGTCGATGTTGAACGAGGCGGGTCTACGGGCGAAGTTG
GTGGAGGGAGGGGAAGGAGGGGGGCGGGCAAGGGTCATCTTGACCAAAGC
TGATGGACGGGGTGGCGATGGTGGCACATAAAGTAAG
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Coding sequence (CDS) from alignment at scaffold_5:224723..225459-

>mRNA_2391 ID=mRNA_2391|Name=jgi.p|Nanoce1779_2|580201|organism=Nannochloropsis oceanica|type=CDS|length=627bp|location=Sequence derived from alignment at scaffold_5:224723..225459- (Nannochloropsis oceanica)
ATGATGGAAGAAGCTGTTGCAACAGTCGTGCGTCTCCTGGCGGGAGTGCT
TGGGATGGTGATCGAGGAAGAAGAAGGGGGGGAGGAGGGGCATGTCGATA
AGGAGGCATTACTGGCAAACGGGCTTGTGGGGGTGATCTTGACTCTACTC
AGACAAGAGGGAGGTCAGGCAGATGGATGCATCCCAGCCATGGACGCTGT
TTCTGCTGTTCCTGCTGCTGCTGCTACAGCGGCTACTGCCGCCGCTACTG
CTGCTGCTACTGCACGTGAAGGCCGCAAAGCCCAGCTTATCCGTTTGCTG
GGTAATTTGTGTCACCGATGTCGGAGCGCACAGGACGAGGTGCGAAAGGA
GGAAGGGGGGTTGATGTTGGTGTTGAACCACTGTAACGTCGACTCTTCGA
ATCCATTTCTGAGGGAATGGGCCTTGTTTTGTATCCGTAATTTGTGCGAG
GGCAACGATGAGAACCAGCGGGTGGTGGGTGAGGTCCAGGTGCAAGAAGC
AGTGCAAACGTCGATGTTGAACGAGGCGGGTCTACGGGCGAAGTTGGTGG
AGGGAGGGGAAGGAGGGGGGCGGGCAAGGGTCATCTTGACCAAAGCTGAT
GGACGGGGTGGCGATGGTGGCACATAA
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Synonyms
Publications