Properties
Property Name | Value |
TranscriptId | 580283 |
Track | FilteredModels2 |
ProteinId | 580197 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_5 | supercontig | scaffold_5:220162..222756 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2389 ID=mRNA_2389|Name=jgi.p|Nanoce1779_2|580197|organism=Nannochloropsis oceanica|type=mRNA|length=2450bp TGGAGGGGAGTGGGAAGAGGATCCAGGTGCGGCTGTTTAACTTGAAGCGG GTGAGTAAGATGAGGGAGCTGAACCCGGAGGACGTGGATCATTTGGTGGC GTTGCGAGGGATGGTGATCCGTTGCAGCACGATCATCCCCGAGCTGCACT TGGGCTGTTTCCGATGCTTCATGTGTGGCTTCGAGGTGGTAGTGGAGAAC GACAGGGGGAGGATCGAGGAGCCGTCCCGGTGCGAAAACTGCCAGGCACG GGACGCGATGGAGTTGCTGGCCAACCGATGTGCGTACACCAACAAGCAGA TCGTGCGGATGCAGGAGACCCCCGACGAAATCCCGGAGGGAGAAACACCC AATTCACTCACCCTCTTTGCCTTCGACGACTTGACCGACGCCGTGCGACC AGGAGATCGGATCGAAGTGACGGGTATATTGCGAGCGGCTCCTCGGCGCG TTCACCCCCGGCTCACCACCGTCCGCAGCGTTTACAAAACCCACGTGGAA GCCTTGCACTTCTCCCACATCGACAAAGACCTCAAGGTAGAAACGGGCCC GGGGGAAGGCACCCGCACTACGGCAGCAGCAACAGCAGCAACAGCATCAG CAGGAAGAGGAGCGGGAGGGGGCATGGGGGCGAGTACAACCGGCAGTGAT ACCTCCCGCATGCGTGGCTTGCACCTCCCCCTGGCGCGTGTGAAGGAGAT CAAAGAGCTGTCGAAGCATCCATTGATATACGAGAAGCTGGCCCAGGCAG TGGCGCCGTCGATCTGGGAGATGGATGACGTGAAGAAGGGGGTATTGTGT CTTTTATTTGGAGGCACCGATAAGAAGGCGGGAGCCAGGAAGGAGCGAAA GGGGAGGGAGAGGGAGGCACGGAGGAGGGAAAAGAGGGAAGAGAGGGAAG AGAGGGGGAGGTGGAGGAGGAGGAGGAGGGAGGCGTTGGATGAGGAGGAG AAGGGGGGGGAGAGAGGAGAGGAAGGCCAAGCTGACGACGGAAGCAACAG CGAGCAGGGGAGCGACATGGATGAAGACGGAGTGGAGGGGGAGACGGAGG GGGAAGCAGAGGAGGAGGATCTGGCTGCTGTCAATTGTAGGGGCGACATT AATATATTGCTGTGTGGAGATCCGGGTACAAGTAAATCACAAATTTTGCT TTATGTGCATAAGCTTGCCCCGCGTGGGATCTACACCTCGGGAAAAGGCT CTTCGGCCGTTGGGTTGACGGCCTCGGTCATCCGGGATGCGGAGACAAAG GAGCTGGTGCTGGAGAGTGGGGCCCTGGTGTTGAGCGACCAAGGAGTTTG TTGCATTGATGAGTTTGACAAGATGAGCGAGACTACGCGGGCCATCCTCC ACGAGGCCATGGAACAACAAACCGTGTCCATCGCCAAGGCCGGCATCATC TGCACCTTGAACGCGCGGACGTCGATTCTGGCATCGGCGAACCCGGTGGA CAGTAGGTATAACCCCAAGCTGTCGGTGGTGGAAAATATCCGGCTGCCCC CCACATTGTTGTCAAGGTTTGATTTAATTTACCTTATTTTAGACAACCCG GATGAGGATAAGGATAGGAGGTTGGCCCGACATTTGGTGAGCCTTTACTA CCAGGAGCCGGCGGTGGAGGCGCCGGACGTGAACCACTCCCTCCTTAAGG ATTATATTGCCTATGCCCGCGCCCATGTATTTCCTGTCCTGAGCGAGGAA GCGGGCGAAGAACTGGTGCAGGGCTATCTAGGGTTAAGGGGGAGTGGGGG GGAAGGGAAGACGATCACCGCGACCCCTCGTCAATTGGAGAGCCTGATTC GTTTGTCGGAGGCACTAGCAAAGATACGCTTGGCGACAGTTGTAGAGAAG AGGGATGTGACGGAGGCGATGAGGCTGATGAACGAGGCTACGTTGAAGGC AGCCACCGACCCGGAGACAGGACAACTGGACCTGGGGAACATCGATGGAA CGAGCAGGGACCGTGAAGCACGGCAGCAATTGGCGGCGGCGGTGAAGGAG TACTTGATGGCGAGAAAGGGGCAGAGGATGAGTGTAAGTGAGATACGGCA TGGCATGCAGGCACAAAGCTCGGTGGAAGTGAAGCAGGGATTGTTGGTGG ATGTGTTGAGAAAAGAGCTGGAACCGGAGGGGGTAGTGAAGTATTTGCAG GCCACACACACGGTGGTCATCCAGTAAGAGAGAGACAGAGCAATCACAGC AAGAAATCGAAGCAGGAGATAGAAAATTTATTGCCCCTGGCGGGAAGCGC TAATGGAAAGCGGAGAATTTCTTTGTAAGACTGTGGATGGTGCACTGGTG CAAGGCATGAGAGAGCGCGTGGGTTCGCGCCCTCTCGGAAAGAAGAACAC GGACACGCATGACAGCGGCAAAAATATAAAGAAGTGGCGGGACAGGCGTC CCTTTCATAAACAAAGAACAACACAAAATAACAAAAATCAACAAAAAAAG back to topprotein sequence of jgi.p|Nanoce1779_2|580197 >mRNA_2389-protein ID=mRNA_2389-protein|Name=jgi.p|Nanoce1779_2|580197|organism=Nannochloropsis oceanica|type=polypeptide|length=706bp MRELNPEDVDHLVALRGMVIRCSTIIPELHLGCFRCFMCGFEVVVENDRG RIEEPSRCENCQARDAMELLANRCAYTNKQIVRMQETPDEIPEGETPNSL TLFAFDDLTDAVRPGDRIEVTGILRAAPRRVHPRLTTVRSVYKTHVEALH FSHIDKDLKVETGPGEGTRTTAAATAATASAGRGAGGGMGASTTGSDTSR MRGLHLPLARVKEIKELSKHPLIYEKLAQAVAPSIWEMDDVKKGVLCLLF GGTDKKAGARKERKGREREARRREKREEREERGRWRRRRREALDEEEKGG ERGEEGQADDGSNSEQGSDMDEDGVEGETEGEAEEEDLAAVNCRGDINIL LCGDPGTSKSQILLYVHKLAPRGIYTSGKGSSAVGLTASVIRDAETKELV LESGALVLSDQGVCCIDEFDKMSETTRAILHEAMEQQTVSIAKAGIICTL NARTSILASANPVDSRYNPKLSVVENIRLPPTLLSRFDLIYLILDNPDED KDRRLARHLVSLYYQEPAVEAPDVNHSLLKDYIAYARAHVFPVLSEEAGE ELVQGYLGLRGSGGEGKTITATPRQLESLIRLSEALAKIRLATVVEKRDV TEAMRLMNEATLKAATDPETGQLDLGNIDGTSRDREARQQLAAAVKEYLM ARKGQRMSVSEIRHGMQAQSSVEVKQGLLVDVLRKELEPEGVVKYLQATH TVVIQ* back to topmRNA from alignment at scaffold_5:220162..222756+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2389 ID=mRNA_2389|Name=jgi.p|Nanoce1779_2|580197|organism=Nannochloropsis oceanica|type=mRNA|length=2595bp|location=Sequence derived from alignment at scaffold_5:220162..222756+ (Nannochloropsis oceanica) TGGAGGGGAGTGGGAAGAGGATCCAGGTGCGGCTGTTTAACTTGAAGCGG
GTGAGTAAGATGAGGGAGCTGAACCCGGAGGACGTGGATCATTTGGTGGC
GTTGCGAGGGATGGTGATCCGTTGCAGCACGATCATCCCCGAGCTGCACT
TGGGCTGTTTCCGATGCTTCATGTGTGGCTTCGAGGTGGTAGTGGAGAAC
GACAGGGGGAGGATCGAGGAGCCGTCCCGGTGCGAAAACTGCCAGGCACG
GGACGCGATGGAGTTGCTGGCCAACCGATGTGCGTACACCAACAAGCAGA
TCGTGCGGATGCAGGAGACCCCCGACGAAATCCCGGAGGGAGAAACACCC
AATTCACTCACCCTCTTTGCCTTCGACGACTTGACCGACGCCGTGCGACC
AGGAGATCGGATCGAAGTGACGGGTATATTGCGAGCGGCTCCTCGGCGCG
TTCACCCCCGGCTCACCACCGTCCGCAGCGTTTACAAAACCCACGTGGAA
GCCTTGCACTTCTCCCACATCGACAAAGACCTCAAGGTAGAAACGGGCCC
GGGGGAAGGCACCCGCACTACGGCAGCAGCAACAGCAGCAACAGCATCAG
CAGGAAGAGGAGCGGGAGGGGGCATGGGGGCGAGTACAACCGGCAGTGAT
ACCTCCCGCATGCGTGGCTTGCACCTCCCCCTGGCGCGTGTGAAGGAGAT
CAAAGAGCTGTCGAAGCATCCATTGATATACGAGAAGCTGGCCCAGGCAG
TGGCGCCGTCGATCTGGGAGATGGATGACGTGAAGAAGGGGGTATTGTGT
CTTTTATTTGGAGGCACCGATAAGAAGGCGGGAGCCAGGAAGGAGCGAAA
GGGGAGGGAGAGGGAGGCACGGAGGAGGGAAAAGAGGGAAGAGAGGGAAG
AGAGGGGGAGGTGGAGGAGGAGGAGGAGGGAGGCGTTGGATGAGGAGGAG
AAGGGGGGGGAGAGAGGAGAGGAAGGCCAAGCTGACGACGGAAGCAACAG
CGAGCAGGGGAGCGACATGGATGAAGACGGAGTGGAGGGGGAGACGGAGG
GGGAAGCAGAGGAGGAGGATCTGGCTGCTGTCAATTGTAGGGGCGACATT
AATATATTGCTGTGTGGAGATCCGGGTACAAGTAAATCACAAATTTTGCT
TTATGTGCATAAGCTTGCCCCGCGTGGGATCTACACCTCGGGAAAAGGCT
CTTCGGCCGTTGGGTTGACGGCCTCGGTCATCCGGGATGCGGAGACAAAG
GAGCTGGTGCTGGAGAGTGGGGCCCTGGTGTTGAGCGACCAAGGAGTTTG
TTGCATTGATGAGTTTGACAAGATGAGCGAGACTACGCGGGCCATCCTCC
ACGAGGCCATGGAACAACAAACCGTGTCCATCGCCAAGGCCGGCATCATC
TGCACCTTGAACGCGCGGACGTCGATTCTGGCATCGGCGAACCCGGTGGA
CAGTAGGTATAACCCCAAGCTGTCGGTGGTGGAAAATATCCGGCTGCCCC
CCACATTGTTGTCAAGGTTTGATTTAATTTACCTTATTTTAGACAACCCG
GATGAGGATAAGGATAGGAGGTTGGCCCGACATTTGGTGAGCCTTTACTA
CCAGGAGCCGGCGGTGGAGGTACGTGTCTTTGTCCTTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTTCCCCCCCTCTTCCCGTTTTGTTATCAGATTCACA
TGTGTCACTCATTCCTCCCTTCCTCCCCTCCCTCTCTTCCCTTCCTCTCT
CCCTTCCCTCGCAGGCGCCGGACGTGAACCACTCCCTCCTTAAGGATTAT
ATTGCCTATGCCCGCGCCCATGTATTTCCTGTCCTGAGCGAGGAAGCGGG
CGAAGAACTGGTGCAGGGCTATCTAGGGTTAAGGGGGAGTGGGGGGGAAG
GGAAGACGATCACCGCGACCCCTCGTCAATTGGAGAGCCTGATTCGTTTG
TCGGAGGCACTAGCAAAGATACGCTTGGCGACAGTTGTAGAGAAGAGGGA
TGTGACGGAGGCGATGAGGCTGATGAACGAGGCTACGTTGAAGGCAGCCA
CCGACCCGGAGACAGGACAACTGGACCTGGGGAACATCGATGGAACGAGC
AGGGACCGTGAAGCACGGCAGCAATTGGCGGCGGCGGTGAAGGAGTACTT
GATGGCGAGAAAGGGGCAGAGGATGAGTGTAAGTGAGATACGGCATGGCA
TGCAGGCACAAAGCTCGGTGGAAGTGAAGCAGGGATTGTTGGTGGATGTG
TTGAGAAAAGAGCTGGAACCGGAGGGGGTAGTGAAGTATTTGCAGGCCAC
ACACACGGTGGTCATCCAGTAAGAGAGAGACAGAGCAATCACAGCAAGAA
ATCGAAGCAGGAGATAGAAAATTTATTGCCCCTGGCGGGAAGCGCTAATG
GAAAGCGGAGAATTTCTTTGTAAGACTGTGGATGGTGCACTGGTGCAAGG
CATGAGAGAGCGCGTGGGTTCGCGCCCTCTCGGAAAGAAGAACACGGACA
CGCATGACAGCGGCAAAAATATAAAGAAGTGGCGGGACAGGCGTCCCTTT
CATAAACAAAGAACAACACAAAATAACAAAAATCAACAAAAAAAG back to topCoding sequence (CDS) from alignment at scaffold_5:220162..222756+ >mRNA_2389 ID=mRNA_2389|Name=jgi.p|Nanoce1779_2|580197|organism=Nannochloropsis oceanica|type=CDS|length=4236bp|location=Sequence derived from alignment at scaffold_5:220162..222756+ (Nannochloropsis oceanica) ATGAGGGAGCTGAACCCGGAGGACGTGGATCATTTGGTGGCGTTGCGAGG GATGGTGATCCGTTGCAGCACGATCATCCCCGAGCTGCACTTGGGCTGTT TCCGATGCTTCATGTGTGGCTTCGAGGTGGTAGTGGAGAACGACAGGGGG AGGATCGAGGAGCCGTCCCGGTGCGAAAACTGCCAGGCACGGGACGCGAT GGAGTTGCTGGCCAACCGATGTGCGTACACCAACAAGCAGATCGTGCGGA TGCAGGAGACCCCCGACGAAATCCCGGAGGGAGAAACACCCAATTCACTC ACCCTCTTTGCCTTCGACGACTTGACCGACGCCGTGCGACCAGGAGATCG GATCGAAGTGACGGGTATATTGCGAGCGGCTCCTCGGCGCGTTCACCCCC GGCTCACCACCGTCCGCAGCGTTTACAAAACCCACGTGGAAGCCTTGCAC TTCTCCCACATCGACAAAGACCTCAAGGTAGAAACGGGCCCGGGGGAAGG CACCCGCACTACGGCAGCAGCAACAGCAGCAACAGCATCAGCAGGAAGAG GAGCGGGAGGGGGCATGGGGGCGAGTACAACCGGCAGTGATACCTCCCGC ATGCGTGGCTTGCACCTCCCCCTGGCGCGTGTGAAGGAGATCAAAGAGCT GTCGAAGCATCCATTGATATACGAGAAGCTGGCCCAGGCAGTGGCGCCGT CGATCTGGGAGATGGATGACGTGAAGAAGGGGGTATTGTGTCTTTTATTT GGAGGCACCGATAAGAAGGCGGGAGCCAGGAAGGAGCGAAAGGGGAGGGA GAGGGAGGCACGGAGGAGGGAAAAGAGGGAAGAGAGGGAAGAGAGGGGGA GGTGGAGGAGGAGGAGGAGGGAGGCGTTGGATGAGGAGGAGAAGGGGGGG GAGAGAGGAGAGGAAGGCCAAGCTGACGACGGAAGCAACAGCGAGCAGGG GAGCGACATGGATGAAGACGGAGTGGAGGGGGAGACGGAGGGGGAAGCAG AGGAGGAGGATCTGGCTGCTGTCAATTGTAGGGGCGACATTAATATATTG CTGTGTGGAGATCCGGGTACAAGTAAATCACAAATTTTGCTTTATGTGCA TAAGCTTGCCCCGCGTGGGATCTACACCTCGGGAAAAGGCTCTTCGGCCG TTGGGTTGACGGCCTCGGTCATCCGGGATGCGGAGACAAAGGAGCTGGTG CTGGAGAGTGGGGCCCTGGTGTTGAGCGACCAAGGAGTTTGTTGCATTGA TGAGTTTGACAAGATGAGCGAGACTACGCGGGCCATCCTCCACGAGGCCA TGGAACAACAAACCGTGTCCATCGCCAAGGCCGGCATCATCTGCACCTTG AACGCGCGGACGTCGATTCTGGCATCGGCGAACCCGGTGGACAGTAGGTA TAACCCCAAGCTGTCGGTGGTGGAAAATATCCGGCTGCCCCCCACATTGT TGTCAAGGTTTGATTTAATTTACCTTATTTTAGACAACCCGGATGAGGAT AAGGATAGGAGGTTGGCCCGACATTTGGTGAGCCTTTACTACCAGGAGCC GGCGGTGGAGGCGCCGGACGTGAACCACTCCCTCCTTAAGGATTATATTG CCTATGCCCGCGCCCATGTATTTCCTGTCCTGAGCGAGGAAGCGGGCGAA GAACTGGTGCAGGGCTATCTAGGGTTAAGGGGGAGTGGGGGGGAAGGGAA GACGATCACCGCGACCCCTCGTCAATTGGAGAGCCTGATTCGTTTGTCGG AGGCACTAGCAAAGATACGCTTGGCGACAGTTGTAGAGAAGAGGGATGTG ACGGAGGCGATGAGGCTGATGAACGAGGCTACGTTGAAGGCAGCCACCGA CCCGGAGACAGGACAACTGGACCTGGGGAACATCGATGGAACGAGCAGGG ACCGTGAAGCACGGCAGCAATTGGCGGCGGCGGTGAAGGAGTACTTGATG GCGAGAAAGGGGCAGAGGATGAGTGTAAGTGAGATACGGCATGGCATGCA GGCACAAAGCTCGGTGGAAGTGAAGCAGGGATTGTTGGTGGATGTGTTGA GAAAAGAGCTGGAACCGGAGGGGGTAGTGAAGTATTTGCAGGCCACACAC ACGGTGGTCATCCAGTAAATGAGGGAGCTGAACCCGGAGGACGTGGATCA TTTGGTGGCGTTGCGAGGGATGGTGATCCGTTGCAGCACGATCATCCCCG AGCTGCACTTGGGCTGTTTCCGATGCTTCATGTGTGGCTTCGAGGTGGTA GTGGAGAACGACAGGGGGAGGATCGAGGAGCCGTCCCGGTGCGAAAACTG CCAGGCACGGGACGCGATGGAGTTGCTGGCCAACCGATGTGCGTACACCA ACAAGCAGATCGTGCGGATGCAGGAGACCCCCGACGAAATCCCGGAGGGA GAAACACCCAATTCACTCACCCTCTTTGCCTTCGACGACTTGACCGACGC CGTGCGACCAGGAGATCGGATCGAAGTGACGGGTATATTGCGAGCGGCTC CTCGGCGCGTTCACCCCCGGCTCACCACCGTCCGCAGCGTTTACAAAACC CACGTGGAAGCCTTGCACTTCTCCCACATCGACAAAGACCTCAAGGTAGA AACGGGCCCGGGGGAAGGCACCCGCACTACGGCAGCAGCAACAGCAGCAA CAGCATCAGCAGGAAGAGGAGCGGGAGGGGGCATGGGGGCGAGTACAACC GGCAGTGATACCTCCCGCATGCGTGGCTTGCACCTCCCCCTGGCGCGTGT GAAGGAGATCAAAGAGCTGTCGAAGCATCCATTGATATACGAGAAGCTGG CCCAGGCAGTGGCGCCGTCGATCTGGGAGATGGATGACGTGAAGAAGGGG GTATTGTGTCTTTTATTTGGAGGCACCGATAAGAAGGCGGGAGCCAGGAA GGAGCGAAAGGGGAGGGAGAGGGAGGCACGGAGGAGGGAAAAGAGGGAAG AGAGGGAAGAGAGGGGGAGGTGGAGGAGGAGGAGGAGGGAGGCGTTGGAT GAGGAGGAGAAGGGGGGGGAGAGAGGAGAGGAAGGCCAAGCTGACGACGG AAGCAACAGCGAGCAGGGGAGCGACATGGATGAAGACGGAGTGGAGGGGG AGACGGAGGGGGAAGCAGAGGAGGAGGATCTGGCTGCTGTCAATTGTAGG GGCGACATTAATATATTGCTGTGTGGAGATCCGGGTACAAGTAAATCACA AATTTTGCTTTATGTGCATAAGCTTGCCCCGCGTGGGATCTACACCTCGG GAAAAGGCTCTTCGGCCGTTGGGTTGACGGCCTCGGTCATCCGGGATGCG GAGACAAAGGAGCTGGTGCTGGAGAGTGGGGCCCTGGTGTTGAGCGACCA AGGAGTTTGTTGCATTGATGAGTTTGACAAGATGAGCGAGACTACGCGGG CCATCCTCCACGAGGCCATGGAACAACAAACCGTGTCCATCGCCAAGGCC GGCATCATCTGCACCTTGAACGCGCGGACGTCGATTCTGGCATCGGCGAA CCCGGTGGACAGTAGGTATAACCCCAAGCTGTCGGTGGTGGAAAATATCC GGCTGCCCCCCACATTGTTGTCAAGGTTTGATTTAATTTACCTTATTTTA GACAACCCGGATGAGGATAAGGATAGGAGGTTGGCCCGACATTTGGTGAG CCTTTACTACCAGGAGCCGGCGGTGGAGGCGCCGGACGTGAACCACTCCC TCCTTAAGGATTATATTGCCTATGCCCGCGCCCATGTATTTCCTGTCCTG AGCGAGGAAGCGGGCGAAGAACTGGTGCAGGGCTATCTAGGGTTAAGGGG GAGTGGGGGGGAAGGGAAGACGATCACCGCGACCCCTCGTCAATTGGAGA GCCTGATTCGTTTGTCGGAGGCACTAGCAAAGATACGCTTGGCGACAGTT GTAGAGAAGAGGGATGTGACGGAGGCGATGAGGCTGATGAACGAGGCTAC GTTGAAGGCAGCCACCGACCCGGAGACAGGACAACTGGACCTGGGGAACA TCGATGGAACGAGCAGGGACCGTGAAGCACGGCAGCAATTGGCGGCGGCG GTGAAGGAGTACTTGATGGCGAGAAAGGGGCAGAGGATGAGTGTAAGTGA GATACGGCATGGCATGCAGGCACAAAGCTCGGTGGAAGTGAAGCAGGGAT TGTTGGTGGATGTGTTGAGAAAAGAGCTGGAACCGGAGGGGGTAGTGAAG TATTTGCAGGCCACACACACGGTGGTCATCCAGTAA back to top
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