Properties
| Property Name | Value |
|---|
| TranscriptId | 580279 |
| Track | FilteredModels2 |
| ProteinId | 580193 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:215181..216828 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2387 ID=mRNA_2387|Name=jgi.p|Nanoce1779_2|580193|organism=Nannochloropsis oceanica|type=mRNA|length=1648bp
AAAGGCGCCCTTATCATTTATTCCACATGTTGCAAAACATTTTCTCTTTG
ACCTGAATAAAAATTAAAGGTTCGCAACCCCAAGCGATAATATAGGCTAA
CCCCCTACACTTTCCATTTCTTTATGTGCACATTTCACCGCCGAATTTAA
TGCTGCAGACTGTCTAACCCTTCAGCTTCTCTAATTCCTGCATTTAGAGA
TACTATCTAACACCGACAGGCACAATAAAAAATGGCGCGGCCGTCGCCTT
TCCGATTGCTTTCCCTTCTCCTCTGGTTCGTTCTGGCCTCCACCTCCACC
GCATCCACCTCCACTGCCCAATCTTATCGCAAGAAATCCACCGTAGATGA
ATGCTTCGGCAAATTCACGCCGGCGCGCACACCTTTAAAAATTCCCACGG
GCTCAGCCGCAAACCCGCAAGGCCATTCCAGACTCCGCGCTTTCACCCGT
GACACTCTCCATGAACTTGGCCACACTATTCGGGAGCATCCCGCGCAGAC
CGCAATCCTCTCTCTCTTAGTCTACATCAAACTTCATCATCCCGAGCTCG
CCAAGAACCAAAAGCATTTCTTTCAGGTCAATGACATGGAGATGAAGGCG
TTGGGTTTGCTGTGGTTAATTTGTAGTTTGGACGAGTCGTGGTATGTCGA
GGCAGCAAAGTGGCTCAAAGGCGTTTGGACGCAAGCCATGAGCCTGCTGC
GAAAGCTAGTGCATCGACTGGTGGGATGGTGGAAGGGCACGGCGACGAAG
GGATGATATGATATTTGTGGTCGGGGTCTGATACGAGGTGACAGGCCGTC
TGCCAGGGCAGGCTTTGCTTTTGGCTGCGCTGCGTCTTATCTTTGTTGTG
GAAGCCGAGTTAGTCTCCGAGGAATACATCAATCGATCCATACGCGCCAG
TTTAAATTGAGCAGGCGGCTCGTGTAGGCGTTCGGATTTGATTTTTTTTG
GGGGGGGAAACGGAAAAGGGAAAAAAATGGGAGGAAACGCCAAGGAAAAT
CTTTCTTGCTATCTTTTCCTCTCTTCTTTCCTCTTCCCATTCACTCCTTT
TCGTTTGTTTGATTCGTTCCGCACCAATGCGCACTTTCTACTTCGCTTCC
CTCGATTCTCCACAGTCTTCCCTTGGCGAACCCAATAACACCCCTACACA
CATAGTCTCTCTCTTACATATCCTCGTCCTCCTGCTCTCCTGTCATCATT
TTCTCCCTTCCCTCCTTATGAGACACACACTCACATTCAATCAATCTCGC
ACGTGCATAATTATTTGGATTTTCGCCTTCATGCCATAATACGATATCTT
CATCCCTCCGTCCTTCCCAACTACCAGCCTCTGATCCAGGTAATCTACTA
CCACCAACAACTCCTCACACAGGTTCCCCAAGCTCCCTCGACTTGTAACC
AAACCTCACAGCTCTCCCCTACGCCTACCCTTTTCCCCGCCTTCTCCCTT
CCCTATTTGCCCCCTCCTCCCGCCAACTTCTGATTCAGGTCCTCCACCAT
CACCAGCAGCTCCTCACACATGGTCTCATGCTCCCTCGCCTTGGGCACTA
GACTCACATATTTCTCCTCAAATTCTTCCGCCTTCCTCTTATGCTCCTGT
AATGAGACCGCCGTCCTCGACAGGCTCTCATATGCCTGCTCTCTATCC back to topprotein sequence of jgi.p|Nanoce1779_2|580193 >mRNA_2387-protein ID=mRNA_2387-protein|Name=jgi.p|Nanoce1779_2|580193|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MARPSPFRLLSLLLWFVLASTSTASTSTAQSYRKKSTVDECFGKFTPART
PLKIPTGSAANPQGHSRLRAFTRDTLHELGHTIREHPAQTAILSLLVYIK
LHHPELAKNQKHFFQVNDMEMKALGLLWLICSLDESWYVEAAKWLKGVWT
QAMSLLRKLVHRLVGWWKGTATKG* back to topmRNA from alignment at scaffold_5:215181..216828+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2387 ID=mRNA_2387|Name=jgi.p|Nanoce1779_2|580193|organism=Nannochloropsis oceanica|type=mRNA|length=1648bp|location=Sequence derived from alignment at scaffold_5:215181..216828+ (Nannochloropsis oceanica)
AAAGGCGCCCTTATCATTTATTCCACATGTTGCAAAACATTTTCTCTTTG
ACCTGAATAAAAATTAAAGGTTCGCAACCCCAAGCGATAATATAGGCTAA
CCCCCTACACTTTCCATTTCTTTATGTGCACATTTCACCGCCGAATTTAA
TGCTGCAGACTGTCTAACCCTTCAGCTTCTCTAATTCCTGCATTTAGAGA
TACTATCTAACACCGACAGGCACAATAAAAAATGGCGCGGCCGTCGCCTT
TCCGATTGCTTTCCCTTCTCCTCTGGTTCGTTCTGGCCTCCACCTCCACC
GCATCCACCTCCACTGCCCAATCTTATCGCAAGAAATCCACCGTAGATGA
ATGCTTCGGCAAATTCACGCCGGCGCGCACACCTTTAAAAATTCCCACGG
GCTCAGCCGCAAACCCGCAAGGCCATTCCAGACTCCGCGCTTTCACCCGT
GACACTCTCCATGAACTTGGCCACACTATTCGGGAGCATCCCGCGCAGAC
CGCAATCCTCTCTCTCTTAGTCTACATCAAACTTCATCATCCCGAGCTCG
CCAAGAACCAAAAGCATTTCTTTCAGGTCAATGACATGGAGATGAAGGCG
TTGGGTTTGCTGTGGTTAATTTGTAGTTTGGACGAGTCGTGGTATGTCGA
GGCAGCAAAGTGGCTCAAAGGCGTTTGGACGCAAGCCATGAGCCTGCTGC
GAAAGCTAGTGCATCGACTGGTGGGATGGTGGAAGGGCACGGCGACGAAG
GGATGATATGATATTTGTGGTCGGGGTCTGATACGAGGTGACAGGCCGTC
TGCCAGGGCAGGCTTTGCTTTTGGCTGCGCTGCGTCTTATCTTTGTTGTG
GAAGCCGAGTTAGTCTCCGAGGAATACATCAATCGATCCATACGCGCCAG
TTTAAATTGAGCAGGCGGCTCGTGTAGGCGTTCGGATTTGATTTTTTTTG
GGGGGGGAAACGGAAAAGGGAAAAAAATGGGAGGAAACGCCAAGGAAAAT
CTTTCTTGCTATCTTTTCCTCTCTTCTTTCCTCTTCCCATTCACTCCTTT
TCGTTTGTTTGATTCGTTCCGCACCAATGCGCACTTTCTACTTCGCTTCC
CTCGATTCTCCACAGTCTTCCCTTGGCGAACCCAATAACACCCCTACACA
CATAGTCTCTCTCTTACATATCCTCGTCCTCCTGCTCTCCTGTCATCATT
TTCTCCCTTCCCTCCTTATGAGACACACACTCACATTCAATCAATCTCGC
ACGTGCATAATTATTTGGATTTTCGCCTTCATGCCATAATACGATATCTT
CATCCCTCCGTCCTTCCCAACTACCAGCCTCTGATCCAGGTAATCTACTA
CCACCAACAACTCCTCACACAGGTTCCCCAAGCTCCCTCGACTTGTAACC
AAACCTCACAGCTCTCCCCTACGCCTACCCTTTTCCCCGCCTTCTCCCTT
CCCTATTTGCCCCCTCCTCCCGCCAACTTCTGATTCAGGTCCTCCACCAT
CACCAGCAGCTCCTCACACATGGTCTCATGCTCCCTCGCCTTGGGCACTA
GACTCACATATTTCTCCTCAAATTCTTCCGCCTTCCTCTTATGCTCCTGT
AATGAGACCGCCGTCCTCGACAGGCTCTCATATGCCTGCTCTCTATCC back to topCoding sequence (CDS) from alignment at scaffold_5:215181..216828+ >mRNA_2387 ID=mRNA_2387|Name=jgi.p|Nanoce1779_2|580193|organism=Nannochloropsis oceanica|type=CDS|length=525bp|location=Sequence derived from alignment at scaffold_5:215181..216828+ (Nannochloropsis oceanica)
ATGGCGCGGCCGTCGCCTTTCCGATTGCTTTCCCTTCTCCTCTGGTTCGT
TCTGGCCTCCACCTCCACCGCATCCACCTCCACTGCCCAATCTTATCGCA
AGAAATCCACCGTAGATGAATGCTTCGGCAAATTCACGCCGGCGCGCACA
CCTTTAAAAATTCCCACGGGCTCAGCCGCAAACCCGCAAGGCCATTCCAG
ACTCCGCGCTTTCACCCGTGACACTCTCCATGAACTTGGCCACACTATTC
GGGAGCATCCCGCGCAGACCGCAATCCTCTCTCTCTTAGTCTACATCAAA
CTTCATCATCCCGAGCTCGCCAAGAACCAAAAGCATTTCTTTCAGGTCAA
TGACATGGAGATGAAGGCGTTGGGTTTGCTGTGGTTAATTTGTAGTTTGG
ACGAGTCGTGGTATGTCGAGGCAGCAAAGTGGCTCAAAGGCGTTTGGACG
CAAGCCATGAGCCTGCTGCGAAAGCTAGTGCATCGACTGGTGGGATGGTG
GAAGGGCACGGCGACGAAGGGATGA back to top
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