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Properties
| Property Name | Value |
|---|
| TranscriptId | 580274 |
| Track | FilteredModels2 |
| ProteinId | 580188 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:212975..214873 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2386 ID=mRNA_2386|Name=jgi.p|Nanoce1779_2|580188|organism=Nannochloropsis oceanica|type=mRNA|length=1414bp
CAGTCTTGGCACATCACAGCGTATGTTCTCTTCGCCCTCCACAAAGCTGC
AACGACGTCCACGTCTGCTGCCATTGGTACTGCCGCTGCTGGCTTTCCTA
CACACTGGCCACGCCTTTGTTACGACATCCCTGCGCATGATGGCGTCCTC
GTCCACCTCCGCTTCGGCTTCCTCCATGACCGCGGGCAATGATAACATTG
TGATTGTGGGTGGTGGTATCATGGGCGCTTGCACCTTGTACTACCTGACG
CAAATGGGCTTAAAGCCCACGTTAATTGAACGAGCCGAGATTGCGGCGGC
TGCAAGCGGGAAGTCAGGGGGGTTTCTCGCCCGCTCCTGGCATAGTGGCT
CGACAGCCAAGCTGTATGAACTCAGTTTCGACATGCATGCACAGCTCGCC
CAAGAACTTGGCATTGAAAGCTACCGTAAAATTATCACGTTGCAAGTGCA
AGGCGGTCCACACGCTGGGCGGAAAAAGTCGGCAATGAAGCCCAGTTGGT
TGGACGGAAGGGCTGACAGTGCGTTCATGGACGACGATACCGCCCAAGTG
ACCCCCAGAGAATTCACCCAGAAAATTGTCGCTGCGGCGGTGGCCAAAGG
GGCCAAGGTCGTAAAGGGAACGGCCGTTGGCATGGTGTTTGACAAGAAGG
AAGGGGAGGAGCGGGGAAACGAGCTGCCTGTTGTTACAGGCGTGCGGTTG
GGCGAGAAGGAGACACCGGTGCCTTGTAGCAAGGTGGTGGTAGCCACGGG
GCCGTGGGCTCCGGTGGCGGGGGAATGGTTTGGAATTCCTGTGCCGATGG
AAGGTATCTACAGTACCAGCATCACCCTCCCCAACTGCGAGGCCGCAAGC
ATCCAGGAGCCTTACGCGCTTTTCTGTGACGAAGATGCCAATGGCTGCCA
CATAGAAGTATATCCGCGGCCGGACGGAAAAATATACATGTGTGGGTTGG
GAGGTAGCGACTATGTGAGTGGCACGCGCTTGGCCCCTGGGGGGGACTGT
GACCGACCTGAGAGAATCGTACCGAAGCCTCACAGGGTGGTGGCGGCGAT
GAAGTCTTTCTCGGACATGTCGCCGAGCATGGCCAAAGGAAAGGAGCCAG
AAGCGGCTGCGTGCATGCGGCCATGTAGCCACGATGGGTTGCCCATTCTG
GGACGGATTCCAACGGCCAGAAATGCATACCTGGCGACTGCGTTGAATCA
GTGGGGGATCCTCGGCGCACCAGCTGCGGGGTTGTGCATGGCGGAGTTGG
TGGTGGAGGGCATGGCCAAAAGCGCTAACATCGATGCCTTCTCGCCCGCC
CGCTTCTTTACGTCAAAAACACGCCGTGGCAAGAATATGAAGGGGCTGGA
GGTAGGAGAGCAATGGTAATAGAGAGGTTTCAATGAAAGAATTAATGTAA
ATTGAGAATTGATG back to topprotein sequence of jgi.p|Nanoce1779_2|580188 >mRNA_2386-protein ID=mRNA_2386-protein|Name=jgi.p|Nanoce1779_2|580188|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MFSSPSTKLQRRPRLLPLVLPLLAFLHTGHAFVTTSLRMMASSSTSASAS
SMTAGNDNIVIVGGGIMGACTLYYLTQMGLKPTLIERAEIAAAASGKSGG
FLARSWHSGSTAKLYELSFDMHAQLAQELGIESYRKIITLQVQGGPHAGR
KKSAMKPSWLDGRADSAFMDDDTAQVTPREFTQKIVAAAVAKGAKVVKGT
AVGMVFDKKEGEERGNELPVVTGVRLGEKETPVPCSKVVVATGPWAPVAG
EWFGIPVPMEGIYSTSITLPNCEAASIQEPYALFCDEDANGCHIEVYPRP
DGKIYMCGLGGSDYVSGTRLAPGGDCDRPERIVPKPHRVVAAMKSFSDMS
PSMAKGKEPEAAACMRPCSHDGLPILGRIPTARNAYLATALNQWGILGAP
AAGLCMAELVVEGMAKSANIDAFSPARFFTSKTRRGKNMKGLEVGEQW* back to topmRNA from alignment at scaffold_5:212975..214873- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2386 ID=mRNA_2386|Name=jgi.p|Nanoce1779_2|580188|organism=Nannochloropsis oceanica|type=mRNA|length=1899bp|location=Sequence derived from alignment at scaffold_5:212975..214873- (Nannochloropsis oceanica)
CAGTCTTGGCACATCACAGCGTATGTTCTCTTCGCCCTCCACAAAGCTGC
AACGACGTCCACGTCTGCTGCCATTGGTACTGCCGCTGCTGGCTTTCCTA
CACACTGGCCACGCCTTTGTTACGACATCCCTGCGCATGATGGCGTCCTC
GTCCACCTCCGCTTCGGCTTCCTCCATGACCGCGGGCAATGATAACATTG
TGATTGTGGGTGGTGGTATCATGGGCGCTTGCACCTTGTACTACCTGACG
CAAATGGGCTTAAAGCCCACGTTAATTGAACGAGCCGAGATTGCGGCGGC
TGCAAGCGGGAAGTCAGGGGGGTTTCTCGCCCGCTCCTGGCATAGTGGCT
CGACAGCCAAGCTGTATGAACTCAGTTTCGACATGCATGCACAGCTCGCC
CAAGAACTTGGCATTGAAAGCTACCGTAAAATTATCACGTTGCAAGTGCA
AGGCGGTCCACACGCTGGGCGGAAAAAGTCGGCAATGAAGCCCAGTTGGT
TGGACGGAAGGGCTGACAGTGCGTTCATGGACGACGATACCGCCCAAGTG
ACCCCCAGAGAATTCACCCAGAAAATTGTCGCTGCGGCGGTGGCCAAAGG
GGCCAAGGTCGTAAAGGGAACGGCCGTTGGCATGGTGTTTGACAAGAAGG
AAGGGGAGGAGCGGGGAAACGAGCTGCCTGTTGTTACAGGCGTGCGGTTG
GGCGAGAAGGAGACACCGGTGCCTTGTAGCAAGGTGGTGGTAGCCACGGG
GCCGTGGGCTCCGGTGGCGGGGGAATGGTTTGGAATTCCTGTGCCGATGG
AAGGTAAGGCGGTTGGCGTTAGGCTTCAGGATGTGAGGTGGGAGTGAAAA
AGGAGAGGAGGAAAATAGGGAGGGAAAATTAGAACTCGCAGGCGCCCAAG
TTTAGGCAGTCCCGCTACTATTGGGTGTATTAATCCCTCTGTCAATTCCT
CTCGTCTTCCTCATTCTTTCGTCCCCATTCCTCTCTACAATAACACAGGT
ATCTACAGTACCAGCATCACCCTCCCCAACTGCGAGGCCGCAAGCATCCA
GGAGCCTTACGCGCTTTTCTGTGACGAAGATGCCAATGGCTGCCACATAG
AAGTATATCCGCGGCCGGACGGAAAAATATACATGTGTGGGTTGGGAGGT
AGCGACTATGTGAGTGGCACGCGCTTGGCCCCTGGGGGGGACTGTGACCG
ACCTGAGAGAATCGTACCGAAGCCTCACAGGGTGGTGGCGGCGATGAAGT
CTTTCTCGGACATGTCGCCGAGCATGGCCAAAGGAAAGGAGCCAGAAGCG
GCTGCGTGCATGCGGCCATGTAGCCACGATGGGTTGCCCATTCTGGGACG
GATTCCAACGGCCAGAAATGCATACCTGGCGACTGCGTTGAATCAGTGGG
GGATCCTCGGTGCGTCTTATTTTCCGATTGTGGGGGAAGGGGAAGAGGAG
AAAAGAGGAGATTTATTTTTTCCGTAATTGTTTTTGTGCTTCTGTATGAT
CGTCATATTGTCATTGTGTATGTGTGTGGTTTCGTGTTCCTCTCCCCGCT
TGTACATCCATATTTCTTTTTTCTGATTCCTCGTGTCCTGTCTTTTCTAC
TTTATCACACAACCAAATGGTGATCTTGCTCAGTCCCTCATGCCCGCCGT
ATTTATTATAATCCACCTTTTAAATTCCTCTTTCGTGAAAAATATGCAGG
CGCACCAGCTGCGGGGTTGTGCATGGCGGAGTTGGTGGTGGAGGGCATGG
CCAAAAGCGCTAACATCGATGCCTTCTCGCCCGCCCGCTTCTTTACGTCA
AAAACACGCCGTGGCAAGAATATGAAGGGGCTGGAGGTAGGAGAGCAATG
GTAATAGAGAGGTTTCAATGAAAGAATTAATGTAAATTGAGAATTGATG back to topCoding sequence (CDS) from alignment at scaffold_5:212975..214873- >mRNA_2386 ID=mRNA_2386|Name=jgi.p|Nanoce1779_2|580188|organism=Nannochloropsis oceanica|type=CDS|length=4041bp|location=Sequence derived from alignment at scaffold_5:212975..214873- (Nannochloropsis oceanica)
GCGCACCAGCTGCGGGGTTGTGCATGGCGGAGTTGGTGGTGGAGGGCATG
GCCAAAAGCGCTAACATCGATGCCTTCTCGCCCGCCCGCTTCTTTACGTC
AAAAACACGCCGTGGCAAGAATATGAAGGGGCTGGAGGTAGGAGAGCAAT
GGTAAGTATCTACAGTACCAGCATCACCCTCCCCAACTGCGAGGCCGCAA
GCATCCAGGAGCCTTACGCGCTTTTCTGTGACGAAGATGCCAATGGCTGC
CACATAGAAGTATATCCGCGGCCGGACGGAAAAATATACATGTGTGGGTT
GGGAGGTAGCGACTATGTGAGTGGCACGCGCTTGGCCCCTGGGGGGGACT
GTGACCGACCTGAGAGAATCGTACCGAAGCCTCACAGGGTGGTGGCGGCG
ATGAAGTCTTTCTCGGACATGTCGCCGAGCATGGCCAAAGGAAAGGAGCC
AGAAGCGGCTGCGTGCATGCGGCCATGTAGCCACGATGGGTTGCCCATTC
TGGGACGGATTCCAACGGCCAGAAATGCATACCTGGCGACTGCGTTGAAT
CAGTGGGGGATCCTCGATGTTCTCTTCGCCCTCCACAAAGCTGCAACGAC
GTCCACGTCTGCTGCCATTGGTACTGCCGCTGCTGGCTTTCCTACACACT
GGCCACGCCTTTGTTACGACATCCCTGCGCATGATGGCGTCCTCGTCCAC
CTCCGCTTCGGCTTCCTCCATGACCGCGGGCAATGATAACATTGTGATTG
TGGGTGGTGGTATCATGGGCGCTTGCACCTTGTACTACCTGACGCAAATG
GGCTTAAAGCCCACGTTAATTGAACGAGCCGAGATTGCGGCGGCTGCAAG
CGGGAAGTCAGGGGGGTTTCTCGCCCGCTCCTGGCATAGTGGCTCGACAG
CCAAGCTGTATGAACTCAGTTTCGACATGCATGCACAGCTCGCCCAAGAA
CTTGGCATTGAAAGCTACCGTAAAATTATCACGTTGCAAGTGCAAGGCGG
TCCACACGCTGGGCGGAAAAAGTCGGCAATGAAGCCCAGTTGGTTGGACG
GAAGGGCTGACAGTGCGTTCATGGACGACGATACCGCCCAAGTGACCCCC
AGAGAATTCACCCAGAAAATTGTCGCTGCGGCGGTGGCCAAAGGGGCCAA
GGTCGTAAAGGGAACGGCCGTTGGCATGGTGTTTGACAAGAAGGAAGGGG
AGGAGCGGGGAAACGAGCTGCCTGTTGTTACAGGCGTGCGGTTGGGCGAG
AAGGAGACACCGGTGCCTTGTAGCAAGGTGGTGGTAGCCACGGGGCCGTG
GGCTCCGGTGGCGGGGGAATGGTTTGGAATTCCTGTGCCGATGGAAGGCG
CACCAGCTGCGGGGTTGTGCATGGCGGAGTTGGTGGTGGAGGGCATGGCC
AAAAGCGCTAACATCGATGCCTTCTCGCCCGCCCGCTTCTTTACGTCAAA
AACACGCCGTGGCAAGAATATGAAGGGGCTGGAGGTAGGAGAGCAATGGT
AAGTATCTACAGTACCAGCATCACCCTCCCCAACTGCGAGGCCGCAAGCA
TCCAGGAGCCTTACGCGCTTTTCTGTGACGAAGATGCCAATGGCTGCCAC
ATAGAAGTATATCCGCGGCCGGACGGAAAAATATACATGTGTGGGTTGGG
AGGTAGCGACTATGTGAGTGGCACGCGCTTGGCCCCTGGGGGGGACTGTG
ACCGACCTGAGAGAATCGTACCGAAGCCTCACAGGGTGGTGGCGGCGATG
AAGTCTTTCTCGGACATGTCGCCGAGCATGGCCAAAGGAAAGGAGCCAGA
AGCGGCTGCGTGCATGCGGCCATGTAGCCACGATGGGTTGCCCATTCTGG
GACGGATTCCAACGGCCAGAAATGCATACCTGGCGACTGCGTTGAATCAG
TGGGGGATCCTCGATGTTCTCTTCGCCCTCCACAAAGCTGCAACGACGTC
CACGTCTGCTGCCATTGGTACTGCCGCTGCTGGCTTTCCTACACACTGGC
CACGCCTTTGTTACGACATCCCTGCGCATGATGGCGTCCTCGTCCACCTC
CGCTTCGGCTTCCTCCATGACCGCGGGCAATGATAACATTGTGATTGTGG
GTGGTGGTATCATGGGCGCTTGCACCTTGTACTACCTGACGCAAATGGGC
TTAAAGCCCACGTTAATTGAACGAGCCGAGATTGCGGCGGCTGCAAGCGG
GAAGTCAGGGGGGTTTCTCGCCCGCTCCTGGCATAGTGGCTCGACAGCCA
AGCTGTATGAACTCAGTTTCGACATGCATGCACAGCTCGCCCAAGAACTT
GGCATTGAAAGCTACCGTAAAATTATCACGTTGCAAGTGCAAGGCGGTCC
ACACGCTGGGCGGAAAAAGTCGGCAATGAAGCCCAGTTGGTTGGACGGAA
GGGCTGACAGTGCGTTCATGGACGACGATACCGCCCAAGTGACCCCCAGA
GAATTCACCCAGAAAATTGTCGCTGCGGCGGTGGCCAAAGGGGCCAAGGT
CGTAAAGGGAACGGCCGTTGGCATGGTGTTTGACAAGAAGGAAGGGGAGG
AGCGGGGAAACGAGCTGCCTGTTGTTACAGGCGTGCGGTTGGGCGAGAAG
GAGACACCGGTGCCTTGTAGCAAGGTGGTGGTAGCCACGGGGCCGTGGGC
TCCGGTGGCGGGGGAATGGTTTGGAATTCCTGTGCCGATGGAAGGCGCAC
CAGCTGCGGGGTTGTGCATGGCGGAGTTGGTGGTGGAGGGCATGGCCAAA
AGCGCTAACATCGATGCCTTCTCGCCCGCCCGCTTCTTTACGTCAAAAAC
ACGCCGTGGCAAGAATATGAAGGGGCTGGAGGTAGGAGAGCAATGGTAAG
TATCTACAGTACCAGCATCACCCTCCCCAACTGCGAGGCCGCAAGCATCC
AGGAGCCTTACGCGCTTTTCTGTGACGAAGATGCCAATGGCTGCCACATA
GAAGTATATCCGCGGCCGGACGGAAAAATATACATGTGTGGGTTGGGAGG
TAGCGACTATGTGAGTGGCACGCGCTTGGCCCCTGGGGGGGACTGTGACC
GACCTGAGAGAATCGTACCGAAGCCTCACAGGGTGGTGGCGGCGATGAAG
TCTTTCTCGGACATGTCGCCGAGCATGGCCAAAGGAAAGGAGCCAGAAGC
GGCTGCGTGCATGCGGCCATGTAGCCACGATGGGTTGCCCATTCTGGGAC
GGATTCCAACGGCCAGAAATGCATACCTGGCGACTGCGTTGAATCAGTGG
GGGATCCTCGATGTTCTCTTCGCCCTCCACAAAGCTGCAACGACGTCCAC
GTCTGCTGCCATTGGTACTGCCGCTGCTGGCTTTCCTACACACTGGCCAC
GCCTTTGTTACGACATCCCTGCGCATGATGGCGTCCTCGTCCACCTCCGC
TTCGGCTTCCTCCATGACCGCGGGCAATGATAACATTGTGATTGTGGGTG
GTGGTATCATGGGCGCTTGCACCTTGTACTACCTGACGCAAATGGGCTTA
AAGCCCACGTTAATTGAACGAGCCGAGATTGCGGCGGCTGCAAGCGGGAA
GTCAGGGGGGTTTCTCGCCCGCTCCTGGCATAGTGGCTCGACAGCCAAGC
TGTATGAACTCAGTTTCGACATGCATGCACAGCTCGCCCAAGAACTTGGC
ATTGAAAGCTACCGTAAAATTATCACGTTGCAAGTGCAAGGCGGTCCACA
CGCTGGGCGGAAAAAGTCGGCAATGAAGCCCAGTTGGTTGGACGGAAGGG
CTGACAGTGCGTTCATGGACGACGATACCGCCCAAGTGACCCCCAGAGAA
TTCACCCAGAAAATTGTCGCTGCGGCGGTGGCCAAAGGGGCCAAGGTCGT
AAAGGGAACGGCCGTTGGCATGGTGTTTGACAAGAAGGAAGGGGAGGAGC
GGGGAAACGAGCTGCCTGTTGTTACAGGCGTGCGGTTGGGCGAGAAGGAG
ACACCGGTGCCTTGTAGCAAGGTGGTGGTAGCCACGGGGCCGTGGGCTCC
GGTGGCGGGGGAATGGTTTGGAATTCCTGTGCCGATGGAAG back to top
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