jgi.p|Nanoce1779_2|580175, mRNA_2384 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580175
Unique NamemRNA_2384
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1144
Alignment locationscaffold_5:205570..206898 +

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Properties
Property NameValue
TranscriptId580261
TrackFilteredModels2
ProteinId580175
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:205570..206898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580175gene_2384Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580175mRNA_2384-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2384CDS_2384Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2384 ID=mRNA_2384|Name=jgi.p|Nanoce1779_2|580175|organism=Nannochloropsis oceanica|type=mRNA|length=1144bp
CTTTGCCTTCCTCCTGCCGTGTTGTTTTCGTTGAGTTTTGGACAGAGCAC
TGTAGTGTGAAAGTTCTGCTGTTGCTGTTGCTGCTGTTGCTGTTGCTGTA
TGACAATGAGTGCGCTCATCTGGGGGTGTGCACATCCCGTCAAGAGCGAA
CAGAGGATAAAGAACACATCAAACATGCCCTTATGCCTCGTTTTCTCGAC
CAAACTCACCCTCCATACAGGAAGCCGCAGCAGCACCAGCACCACTGACA
GCAACCTCCTCAACAGCCTCCTCACATGCAACCTCGCGGACGACCCGTCT
CCCTCTCCCTCCTCCCGCTCCTAGTCCCCCTCCTCCTCCTCCCCACCCTC
CACGCCTTTCTCCTCCCTTTCCTCCCTTCTTCCTCCTCCTATACCTCCCT
CACTTCCTCCTCCACCCGCTGTTTCTTCTCTTCCACCTCCTCTCCTGTCA
TGTCCACGGTGGTGCAACCTGCCAAACCAAAAATAACGCCTCAGACAGAC
CTCGGCCCCTCCCCCGTCATCCTCGTGGTGGAGCAAACCGAAAGCGAAAC
CCAGCTCGATGGAGGGTGGGAGTTGATCCTTTACAACGATGAAGTGAACA
GCAGGCACCACGTGGCGAGGTCCCTGACGACTGTGTGTCAGTTGAGTGAC
GATCAGGCCTATGACGTGATGATGACGGCGCATAAAAATGGCTTTGCTGT
GGTGGGAGAATACACCCAAGAGGTTGCCGAGGGCTACTGTGAAGGGCTGA
GGGGCGTCGGCATCGGCTGCGACGTTACCAAGGCGGACTCACCGGAATAG
AGGTTATATGTCCGAGGGGGAAAGGAAGAGAGGAAGGGAGGGAGGGAAGG
ATGTACGTATGGGAGGATGTCGAGGAATTGTGTACTAGTGAGATTGAAAA
GGGGAGGAGGAGGAGGCAGGGTAAGAGAAGGCAGACATGCGTGCTGGTCT
CTACCACAGGTTTATGCTTTCGCCGATCCTGGTTGTAATGGTGGATTAAA
TCAATCATATACTATATTGTGCGACGAAGACAAAAAAAAAGGAATGGGTG
ACGGATATATATATATATATACTAGAAAAAGAGGGAACTTTTATCAAACT
TTCACAAACCCAACTCGAAAACGCGATGACAGAGACATAGGCTG
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protein sequence of jgi.p|Nanoce1779_2|580175

>mRNA_2384-protein ID=mRNA_2384-protein|Name=jgi.p|Nanoce1779_2|580175|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MQPRGRPVSLSLLPLLVPLLLLPTLHAFLLPFLPSSSSYTSLTSSSTRCF
FSSTSSPVMSTVVQPAKPKITPQTDLGPSPVILVVEQTESETQLDGGWEL
ILYNDEVNSRHHVARSLTTVCQLSDDQAYDVMMTAHKNGFAVVGEYTQEV
AEGYCEGLRGVGIGCDVTKADSPE*
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mRNA from alignment at scaffold_5:205570..206898+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2384 ID=mRNA_2384|Name=jgi.p|Nanoce1779_2|580175|organism=Nannochloropsis oceanica|type=mRNA|length=1329bp|location=Sequence derived from alignment at scaffold_5:205570..206898+ (Nannochloropsis oceanica)
CTTTGCCTTCCTCCTGCCGTGTTGTTTTCGTTGAGTTTTGGACAGAGCAC
TGTAGTGTGAAAGTTCTGCTGTTGCTGTTGCTGCTGTTGCTGTTGCTGTA
TGACAATGAGTGCGCTCATCTGGGGGTGTGCACATCCCGTCAAGAGCGAA
CAGAGGATAAAGAACACATCAAACATGCCCTTATGCCTCGTTTTCTCGAC
CAAACTCACCCTCCATACAGGAAGCCGCAGCAGCACCAGCACCACTGACA
GCAACCTCCTCAACAGCCTCCTCACATGCAACCTCGCGGACGACCCGTCT
CCCTCTCCCTCCTCCCGCTCCTAGTCCCCCTCCTCCTCCTCCCCACCCTC
CACGCCTTTCTCCTCCCTTTCCTCCCTTCTTCCTCCTCCTATACCTCCCT
CACTTCCTCCTCCACCCGCTGTTTCTTCTCTTCCACCTCCTCTCCTGTCA
TGTCCACGGTGGTGCAACCTGCCAAACCAAAAATAACGCCTCAGACAGAC
CTCGGCCCCTCCCCCGTCATCCTCGTGGTGGAGCAAACCGAAAGCGAAAC
CCAGCTCGATGGAGGGTGGGAGTTGATCCTTTACAACGATGAAGTGAACA
GCAGGCACCACGTGGCGAGGTCCCTGACGACTGTGTGTCAGTTGAGTGAC
GATCAGGCCTATGACGTGATGATGACGGCGCATAAAAATGGTAGGTGATT
CCACCTCTCTCCTCCTGTCTTCCCTCCCTCCCTTCCTCGACGCCTCCTCA
CTCTCACTCCCAAGACATTAGGATGAGAAGCATTCGTTCATAGTTTCATG
CCCTCGCTCCCCTCCCCCCATCTTCTCCACCCTTCCCTCCCTCCCTCCAT
TTCTCCCTCTCATTTCTCCCTTCAGGCTTTGCTGTGGTGGGAGAATACAC
CCAAGAGGTTGCCGAGGGCTACTGTGAAGGGCTGAGGGGCGTCGGCATCG
GCTGCGACGTTACCAAGGCGGACTCACCGGAATAGAGGTTATATGTCCGA
GGGGGAAAGGAAGAGAGGAAGGGAGGGAGGGAAGGATGTACGTATGGGAG
GATGTCGAGGAATTGTGTACTAGTGAGATTGAAAAGGGGAGGAGGAGGAG
GCAGGGTAAGAGAAGGCAGACATGCGTGCTGGTCTCTACCACAGGTTTAT
GCTTTCGCCGATCCTGGTTGTAATGGTGGATTAAATCAATCATATACTAT
ATTGTGCGACGAAGACAAAAAAAAAGGAATGGGTGACGGATATATATATA
TATATACTAGAAAAAGAGGGAACTTTTATCAAACTTTCACAAACCCAACT
CGAAAACGCGATGACAGAGACATAGGCTG
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Coding sequence (CDS) from alignment at scaffold_5:205570..206898+

>mRNA_2384 ID=mRNA_2384|Name=jgi.p|Nanoce1779_2|580175|organism=Nannochloropsis oceanica|type=CDS|length=1050bp|location=Sequence derived from alignment at scaffold_5:205570..206898+ (Nannochloropsis oceanica)
ATGCAACCTCGCGGACGACCCGTCTCCCTCTCCCTCCTCCCGCTCCTAGT
CCCCCTCCTCCTCCTCCCCACCCTCCACGCCTTTCTCCTCCCTTTCCTCC
CTTCTTCCTCCTCCTATACCTCCCTCACTTCCTCCTCCACCCGCTGTTTC
TTCTCTTCCACCTCCTCTCCTGTCATGTCCACGGTGGTGCAACCTGCCAA
ACCAAAAATAACGCCTCAGACAGACCTCGGCCCCTCCCCCGTCATCCTCG
TGGTGGAGCAAACCGAAAGCGAAACCCAGCTCGATGGAGGGTGGGAGTTG
ATCCTTTACAACGATGAAGTGAACAGCAGGCACCACGTGGCGAGGTCCCT
GACGACTGTGTGTCAGTTGAGTGACGATCAGGCCTATGACGTGATGATGA
CGGCGCATAAAAATGGCTTTGCTGTGGTGGGAGAATACACCCAAGAGGTT
GCCGAGGGCTACTGTGAAGGGCTGAGGGGCGTCGGCATCGGCTGCGACGT
TACCAAGGCGGACTCACCGGAATAGATGCAACCTCGCGGACGACCCGTCT
CCCTCTCCCTCCTCCCGCTCCTAGTCCCCCTCCTCCTCCTCCCCACCCTC
CACGCCTTTCTCCTCCCTTTCCTCCCTTCTTCCTCCTCCTATACCTCCCT
CACTTCCTCCTCCACCCGCTGTTTCTTCTCTTCCACCTCCTCTCCTGTCA
TGTCCACGGTGGTGCAACCTGCCAAACCAAAAATAACGCCTCAGACAGAC
CTCGGCCCCTCCCCCGTCATCCTCGTGGTGGAGCAAACCGAAAGCGAAAC
CCAGCTCGATGGAGGGTGGGAGTTGATCCTTTACAACGATGAAGTGAACA
GCAGGCACCACGTGGCGAGGTCCCTGACGACTGTGTGTCAGTTGAGTGAC
GATCAGGCCTATGACGTGATGATGACGGCGCATAAAAATGGCTTTGCTGT
GGTGGGAGAATACACCCAAGAGGTTGCCGAGGGCTACTGTGAAGGGCTGA
GGGGCGTCGGCATCGGCTGCGACGTTACCAAGGCGGACTCACCGGAATAG
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Synonyms
Publications