jgi.p|Nanoce1779_2|580170, mRNA_2383 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580170
Unique NamemRNA_2383
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1455
Alignment locationscaffold_5:204001..205725 -

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Properties
Property NameValue
TranscriptId580256
TrackFilteredModels2
ProteinId580170
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:204001..205725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580170gene_2383Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580170mRNA_2383-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2383CDS_2383Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2383 ID=mRNA_2383|Name=jgi.p|Nanoce1779_2|580170|organism=Nannochloropsis oceanica|type=mRNA|length=1455bp
CCTCTGTTCGCTCTTGACGGGATGTGCACACCCCCAGATGAGCGCACTCA
TTGTCATACAGCAACAGCAACAGCAGCAACAGCAACAGCAGAACTTTCAC
ACTACAGTGCTCTGTCCAAAACTCAACGAAAACAACACGGCAGGAGGAAG
GCAAAGTTTGCAGCTGCTGCTACTGCTGCTGCCTCTCTCGCTGTTCCTGC
GATTCCTCCTGCCGCTGCTACCACCACCGCTGATCCTCCTCCTTCTGCTC
TCTCGCCTGTCGCTAAATGTGTATGTCTGGGTCCTGCTCCATGTTCCCTG
TAACATTGCATTTATGGGCAGAAGTACCTTGCTAATCCCTTCTTCAATTC
ACCAAACAGTGAAGTCCTGTGTCGAAAGAGGAGCCCAAAAATATGGAATA
ATGAGTGAGTCATCCAGCCCTTTTCGATCGAAGAAACAAACGGACATCCG
TTCGCCTCTTGTCACTTCGCATATGTTGGCTGGAATACTATCGTATTGTG
GGTGTTGTCAGATAGAAAGGCTCTGTAATTGGAAACATTAAGAACTTTTT
CCTTTTCATAAGACCGTCGTGATTGGTAAAATACGAGCAATCATCATTCA
ACCCGCACTTTCTTGCTTGCTCTCTCTCACGCTCTTAGACAAAAGCACCT
TATAATCAAATAGAAGAGGAACATCATACAACTCATGACGTACATGTTCG
TAGAAGAAATACGCCATTTTTATGCCTTTTTGATGCCTATGTGAGTGTGA
AGGAGGGGAAAGCAAGAAGTTGGCGGGCGACCAACAAAGCGGAGGGAAAG
AACAAAGGACGAGTATGATCGCATAGAGGAAGAGGTTTAGAAAATTTTGT
GTCTCAGAAAATAACATAGTGATTCCGGTTAGCGTTTCTTCTTCAGAGGG
CAAAGGTCGTAACCCAGGCCTCGGTAGAGGGAGCTTGTTTTCGATCATTG
ACGACGAGTTTTCTAGATGTATGTAGCGTTGGGAGGGTTCACAAAAACAT
GCACAAGTGGCTTTGCAGGACACTGGGTGGTGAAATAGGCAATACGTAAC
AGAGTGTTTCCTTGAACTTACCATTAATTGGCAAATGGACGTGCTTGACT
CTGGAGACGGTGGTGAGGTTGCGGCAGATGCTTGCGTGCAGGATGTTGTT
GGTAAGGTCCGGCCTCGTAAGCAGTAATCCGCCGCTAGCTGCGGCTTGCT
GAAAACAATTGGCTGCACTTGGAGTAAATCAGTGGCGACGTAGGGTGCTG
GGGCGCTTGGAGGGAGCAGGGCAGAGCGGGACACAATTTTAATCTTTGGC
CTCCTGTCTCACTTCTCATCCGCAGTGCCGCGTGCCACAGGGACTTCGTG
GTCGGACGAAATGTGCCCGGCACCACAGGCGACAATGAAGAGAGATGCCA
AGAAAATGTTGCTGACCAACAGGCCGCACAACTACACGGAGGCGAAGGCA
GACAT
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protein sequence of jgi.p|Nanoce1779_2|580170

>mRNA_2383-protein ID=mRNA_2383-protein|Name=jgi.p|Nanoce1779_2|580170|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MSALIVIQQQQQQQQQQQNFHTTVLCPKLNENNTAGGRQSLQLLLLLLPL
SLFLRFLLPLLPPPLILLLLLSRLSLNVYVWVLLHVPCNIAFMGRSTLLI
PSSIHQTVKSCVERGAQKYGIMSESSSPFRSKKQTDIRSPLVTSHMLAGI
LSYCGCCQIERLCNWKH*
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mRNA from alignment at scaffold_5:204001..205725-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2383 ID=mRNA_2383|Name=jgi.p|Nanoce1779_2|580170|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp|location=Sequence derived from alignment at scaffold_5:204001..205725- (Nannochloropsis oceanica)
CCTCTGTTCGCTCTTGACGGGATGTGCACACCCCCAGATGAGCGCACTCA
TTGTCATACAGCAACAGCAACAGCAGCAACAGCAACAGCAGAACTTTCAC
ACTACAGTGCTCTGTCCAAAACTCAACGAAAACAACACGGCAGGAGGAAG
GCAAAGTTTGCAGCTGCTGCTACTGCTGCTGCCTCTCTCGCTGTTCCTGC
GATTCCTCCTGCCGCTGCTACCACCACCGCTGATCCTCCTCCTTCTGCTC
TCTCGCCTGTCGCTGTGTAAGTGAAGAGACGTGTTGATGGTTGCGCGGGA
CAAAGTGAGAAATAGATAGCGAGAAGGGGAGAGGGGGAGAGAAAGGGGGA
GAGAAGGAGGGAGAGAAGGAGATCGAGGATGCGCAGGTTTCATCAGAGAA
GGAATTCATAATATTTTATTCTCACACACGTTGTATTCAGTGGATTGACA
GATATAAATAGTTTTCGCATCACATGAAGCGCATGCCCTCGTTTTCGTCT
ACTTTTTTCTTTCTTTCTTTTCGCGCACGTACCTAAATGTGTATGTCTGG
GTCCTGCTCCATGTTCCCTGTAACATTGCATTTATGGGCAGAAGTACCTT
GCTAATCCCTTCTTCAATTCACCAAACAGTGAAGTCCTGTGTCGAAAGAG
GAGCCCAAAAATATGGAATAATGAGTGAGTCATCCAGCCCTTTTCGATCG
AAGAAACAAACGGACATCCGTTCGCCTCTTGTCACTTCGCATATGTTGGC
TGGAATACTATCGTATTGTGGGTGTTGTCAGATAGAAAGGCTCTGTAATT
GGAAACATTAAGAACTTTTTCCTTTTCATAAGACCGTCGTGATTGGTAAA
ATACGAGCAATCATCATTCAACCCGCACTTTCTTGCTTGCTCTCTCTCAC
GCTCTTAGACAAAAGCACCTTATAATCAAATAGAAGAGGAACATCATACA
ACTCATGACGTACATGTTCGTAGAAGAAATACGCCATTTTTATGCCTTTT
TGATGCCTATGTGAGTGTGAAGGAGGGGAAAGCAAGAAGTTGGCGGGCGA
CCAACAAAGCGGAGGGAAAGAACAAAGGACGAGTATGATCGCATAGAGGA
AGAGGTTTAGAAAATTTTGTGTCTCAGAAAATAACATAGTGATTCCGGTT
AGCGTTTCTTCTTCAGAGGGCAAAGGTCGTAACCCAGGCCTCGGTAGAGG
GAGCTTGTTTTCGATCATTGACGACGAGTTTTCTAGATGTATGTAGCGTT
GGGAGGGTTCACAAAAACATGCACAAGTGGCTTTGCAGGACACTGGGTGG
TGAAATAGGCAATACGTAACAGAGTGTTTCCTTGAACTTACCATTAATTG
GCAAATGGACGTGCTTGACTCTGGAGACGGTGGTGAGGTTGCGGCAGATG
CTTGCGTGCAGGATGTTGTTGGTAAGGTCCGGCCTCGTAAGCAGTAATCC
GCCGCTAGCTGCGGCTTGCTGAAAACAATTGGCTGCACTTGGAGTAAATC
AGTGGCGACGTAGGGTGCTGGGGCGCTTGGAGGGAGCAGGGCAGAGCGGG
ACACAATTTTAATCTTTGGCCTCCTGTCTCACTTCTCATCCGCAGTGCCG
CGTGCCACAGGGACTTCGTGGTCGGACGAAATGTGCCCGGCACCACAGGC
GACAATGAAGAGAGATGCCAAGAAAATGTTGCTGACCAACAGGCCGCACA
ACTACACGGAGGCGAAGGCAGACAT
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Coding sequence (CDS) from alignment at scaffold_5:204001..205725-

>mRNA_2383 ID=mRNA_2383|Name=jgi.p|Nanoce1779_2|580170|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_5:204001..205725- (Nannochloropsis oceanica)
CTAAATGTGTATGTCTGGGTCCTGCTCCATGTTCCCTGTAACATTGCATT
TATGGGCAGAAGTACCTTGCTAATCCCTTCTTCAATTCACCAAACAGTGA
AGTCCTGTGTCGAAAGAGGAGCCCAAAAATATGGAATAATGAGTGAGTCA
TCCAGCCCTTTTCGATCGAAGAAACAAACGGACATCCGTTCGCCTCTTGT
CACTTCGCATATGTTGGCTGGAATACTATCGTATTGTGGGTGTTGTCAGA
TAGAAAGGCTCTGTAATTGGAAACATTAAATGAGCGCACTCATTGTCATA
CAGCAACAGCAACAGCAGCAACAGCAACAGCAGAACTTTCACACTACAGT
GCTCTGTCCAAAACTCAACGAAAACAACACGGCAGGAGGAAGGCAAAGTT
TGCAGCTGCTGCTACTGCTGCTGCCTCTCTCGCTGTTCCTGCGATTCCTC
CTGCCGCTGCTACCACCACCGCTGATCCTCCTCCTTCTGCTCTCTCGCCT
GTCGCTAAATGTGTATGTCTGGGTCCTGCTCCATGTTCCCTGTAACATTG
CATTTATGGGCAGAAGTACCTTGCTAATCCCTTCTTCAATTCACCAAACA
GTGAAGTCCTGTGTCGAAAGAGGAGCCCAAAAATATGGAATAATGAGTGA
GTCATCCAGCCCTTTTCGATCGAAGAAACAAACGGACATCCGTTCGCCTC
TTGTCACTTCGCATATGTTGGCTGGAATACTATCGTATTGTGGGTGTTGT
CAGATAGAAAGGCTCTGTAATTGGAAACATTAAATGAGCGCACTCATTGT
CATACAGCAACAGCAACAGCAGCAACAGCAACAGCAGAACTTTCACACTA
CAGTGCTCTGTCCAAAACTCAACGAAAACAACACGGCAGGAGGAAGGCAA
AGTTTGCAGCTGCTGCTACTGCTGCTGCCTCTCTCGCTGTTCCTGCGATT
CCTCCTGCCGCTGCTACCACCACCGCTGATCCTCCTCCTTCTGCTCTCTC
GCCTGTCG
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Synonyms
Publications