jgi.p|Nanoce1779_2|580172, mRNA_2382 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580172
Unique Name	mRNA_2382
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1725
Alignment location	scaffold_5:204001..205725 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580258
Track	FilteredModels2
ProteinId	580172

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:204001..205725 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580172	gene_2382	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580172	mRNA_2382-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2382	CDS_2382	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:204001..205725+
coding sequence from alignment at scaffold_5:204001..205725+

mRNA sequence

>mRNA_2382 ID=mRNA_2382|Name=jgi.p|Nanoce1779_2|580172|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp
ATGTCTGCCTTCGCCTCCGTGTAGTTGTGCGGCCTGTTGGTCAGCAACAT
TTTCTTGGCATCTCTCTTCATTGTCGCCTGTGGTGCCGGGCACATTTCGT
CCGACCACGAAGTCCCTGTGGCACGCGGCACTGCGGATGAGAAGTGAGAC
AGGAGGCCAAAGATTAAAATTGTGTCCCGCTCTGCCCTGCTCCCTCCAAG
CGCCCCAGCACCCTACGTCGCCACTGATTTACTCCAAGTGCAGCCAATTG
TTTTCAGCAAGCCGCAGCTAGCGGCGGATTACTGCTTACGAGGCCGGACC
TTACCAACAACATCCTGCACGCAAGCATCTGCCGCAACCTCACCACCGTC
TCCAGAGTCAAGCACGTCCATTTGCCAATTAATGGTAAGTTCAAGGAAAC
ACTCTGTTACGTATTGCCTATTTCACCACCCAGTGTCCTGCAAAGCCACT
TGTGCATGTTTTTGTGAACCCTCCCAACGCTACATACATCTAGAAAACTC
GTCGTCAATGATCGAAAACAAGCTCCCTCTACCGAGGCCTGGGTTACGAC
CTTTGCCCTCTGAAGAAGAAACGCTAACCGGAATCACTATGTTATTTTCT
GAGACACAAAATTTTCTAAACCTCTTCCTCTATGCGATCATACTCGTCCT
TTGTTCTTTCCCTCCGCTTTGTTGGTCGCCCGCCAACTTCTTGCTTTCCC
CTCCTTCACACTCACATAGGCATCAAAAAGGCATAAAAATGGCGTATTTC
TTCTACGAACATGTACGTCATGAGTTGTATGATGTTCCTCTTCTATTTGA
TTATAAGGTGCTTTTGTCTAAGAGCGTGAGAGAGAGCAAGCAAGAAAGTG
CGGGTTGAATGATGATTGCTCGTATTTTACCAATCACGACGGTCTTATGA
AAAGGAAAAAGTTCTTAATGTTTCCAATTACAGAGCCTTTCTATCTGACA
ACACCCACAATACGATAGTATTCCAGCCAACATATGCGAAGTGACAAGAG
GCGAACGGATGTCCGTTTGTTTCTTCGATCGAAAAGGGCTGGATGACTCA
CTCATTATTCCATATTTTTGGGCTCCTCTTTCGACACAGGACTTCACTGT
TTGGTGAATTGAAGAAGGGATTAGCAAGGTACTTCTGCCCATAAATGCAA
TGTTACAGGGAACATGGAGCAGGACCCAGACATACACATTTAGGTACGTG
CGCGAAAAGAAAGAAAGAAAAAAGTAGACGAAAACGAGGGCATGCGCTTC
ATGTGATGCGAAAACTATTTATATCTGTCAATCCACTGAATACAACGTGT
GTGAGAATAAAATATTATGAATTCCTTCTCTGATGAAACCTGCGCATCCT
CGATCTCCTTCTCTCCCTCCTTCTCTCCCCCTTTCTCTCCCCCTCTCCCC
TTCTCGCTATCTATTTCTCACTTTGTCCCGCGCAACCATCAACACGTCTC
TTCACTTACACAGCGACAGGCGAGAGAGCAGAAGGAGGAGGATCAGCGGT
GGTGGTAGCAGCGGCAGGAGGAATCGCAGGAACAGCGAGAGAGGCAGCAG
CAGTAGCAGCAGCTGCAAACTTTGCCTTCCTCCTGCCGTGTTGTTTTCGT
TGAGTTTTGGACAGAGCACTGTAGTGTGAAAGTTCTGCTGTTGCTGTTGC
TGCTGTTGCTGTTGCTGTATGACAATGAGTGCGCTCATCTGGGGGTGTGC
ACATCCCGTCAAGAGCGAACAGAGG

protein sequence of jgi.p|Nanoce1779_2|580172

>mRNA_2382-protein ID=mRNA_2382-protein|Name=jgi.p|Nanoce1779_2|580172|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MVSSRKHSVTYCLFHHPVSCKATCACFCEPSQRYIHLENSSSMIENKLPL
PRPGLRPLPSEEETLTGITMLFSETQNFLNLFLYAIILVLCSFPPLCWSP
ANFLLSPPSHSHRHQKGIKMAYFFYEHVRHELYDVPLLFDYKVLLSKSVR
ESKQESAG*

mRNA from alignment at scaffold_5:204001..205725+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2382 ID=mRNA_2382|Name=jgi.p|Nanoce1779_2|580172|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp|location=Sequence derived from alignment at scaffold_5:204001..205725+ (Nannochloropsis oceanica)
ATGTCTGCCTTCGCCTCCGTGTAGTTGTGCGGCCTGTTGGTCAGCAACAT
TTTCTTGGCATCTCTCTTCATTGTCGCCTGTGGTGCCGGGCACATTTCGT
CCGACCACGAAGTCCCTGTGGCACGCGGCACTGCGGATGAGAAGTGAGAC
AGGAGGCCAAAGATTAAAATTGTGTCCCGCTCTGCCCTGCTCCCTCCAAG
CGCCCCAGCACCCTACGTCGCCACTGATTTACTCCAAGTGCAGCCAATTG
TTTTCAGCAAGCCGCAGCTAGCGGCGGATTACTGCTTACGAGGCCGGACC
TTACCAACAACATCCTGCACGCAAGCATCTGCCGCAACCTCACCACCGTC
TCCAGAGTCAAGCACGTCCATTTGCCAATTAATGGTAAGTTCAAGGAAAC
ACTCTGTTACGTATTGCCTATTTCACCACCCAGTGTCCTGCAAAGCCACT
TGTGCATGTTTTTGTGAACCCTCCCAACGCTACATACATCTAGAAAACTC
GTCGTCAATGATCGAAAACAAGCTCCCTCTACCGAGGCCTGGGTTACGAC
CTTTGCCCTCTGAAGAAGAAACGCTAACCGGAATCACTATGTTATTTTCT
GAGACACAAAATTTTCTAAACCTCTTCCTCTATGCGATCATACTCGTCCT
TTGTTCTTTCCCTCCGCTTTGTTGGTCGCCCGCCAACTTCTTGCTTTCCC
CTCCTTCACACTCACATAGGCATCAAAAAGGCATAAAAATGGCGTATTTC
TTCTACGAACATGTACGTCATGAGTTGTATGATGTTCCTCTTCTATTTGA
TTATAAGGTGCTTTTGTCTAAGAGCGTGAGAGAGAGCAAGCAAGAAAGTG
CGGGTTGAATGATGATTGCTCGTATTTTACCAATCACGACGGTCTTATGA
AAAGGAAAAAGTTCTTAATGTTTCCAATTACAGAGCCTTTCTATCTGACA
ACACCCACAATACGATAGTATTCCAGCCAACATATGCGAAGTGACAAGAG
GCGAACGGATGTCCGTTTGTTTCTTCGATCGAAAAGGGCTGGATGACTCA
CTCATTATTCCATATTTTTGGGCTCCTCTTTCGACACAGGACTTCACTGT
TTGGTGAATTGAAGAAGGGATTAGCAAGGTACTTCTGCCCATAAATGCAA
TGTTACAGGGAACATGGAGCAGGACCCAGACATACACATTTAGGTACGTG
CGCGAAAAGAAAGAAAGAAAAAAGTAGACGAAAACGAGGGCATGCGCTTC
ATGTGATGCGAAAACTATTTATATCTGTCAATCCACTGAATACAACGTGT
GTGAGAATAAAATATTATGAATTCCTTCTCTGATGAAACCTGCGCATCCT
CGATCTCCTTCTCTCCCTCCTTCTCTCCCCCTTTCTCTCCCCCTCTCCCC
TTCTCGCTATCTATTTCTCACTTTGTCCCGCGCAACCATCAACACGTCTC
TTCACTTACACAGCGACAGGCGAGAGAGCAGAAGGAGGAGGATCAGCGGT
GGTGGTAGCAGCGGCAGGAGGAATCGCAGGAACAGCGAGAGAGGCAGCAG
CAGTAGCAGCAGCTGCAAACTTTGCCTTCCTCCTGCCGTGTTGTTTTCGT
TGAGTTTTGGACAGAGCACTGTAGTGTGAAAGTTCTGCTGTTGCTGTTGC
TGCTGTTGCTGTTGCTGTATGACAATGAGTGCGCTCATCTGGGGGTGTGC
ACATCCCGTCAAGAGCGAACAGAGG

Coding sequence (CDS) from alignment at scaffold_5:204001..205725+

>mRNA_2382 ID=mRNA_2382|Name=jgi.p|Nanoce1779_2|580172|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at scaffold_5:204001..205725+ (Nannochloropsis oceanica)
ATGGTAAGTTCAAGGAAACACTCTGTTACGTATTGCCTATTTCACCACCC
AGTGTCCTGCAAAGCCACTTGTGCATGTTTTTGTGAACCCTCCCAACGCT
ACATACATCTAGAAAACTCGTCGTCAATGATCGAAAACAAGCTCCCTCTA
CCGAGGCCTGGGTTACGACCTTTGCCCTCTGAAGAAGAAACGCTAACCGG
AATCACTATGTTATTTTCTGAGACACAAAATTTTCTAAACCTCTTCCTCT
ATGCGATCATACTCGTCCTTTGTTCTTTCCCTCCGCTTTGTTGGTCGCCC
GCCAACTTCTTGCTTTCCCCTCCTTCACACTCACATAGGCATCAAAAAGG
CATAAAAATGGCGTATTTCTTCTACGAACATGTACGTCATGAGTTGTATG
ATGTTCCTCTTCTATTTGATTATAAGGTGCTTTTGTCTAAGAGCGTGAGA
GAGAGCAAGCAAGAAAGTGCGGGTTGA

Synonyms

Publications