jgi.p|Nanoce1779_2|563933, mRNA_2380 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|563933
Unique NamemRNA_2380
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length303
Alignment locationscaffold_5:200566..200868 +

Link to JBrowse

Properties
Property NameValue
TranscriptId564019
TrackFilteredModels2
ProteinId563933
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:200566..200868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563933gene_2380Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563933mRNA_2380-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2380CDS_2380Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2380 ID=mRNA_2380|Name=jgi.p|Nanoce1779_2|563933|organism=Nannochloropsis oceanica|type=mRNA|length=303bp
ATGCCGCTCTCCCGTCGTCTGCTCATTGCTATCACCGTGGGCCTCATCGG
CACAGTTTTTCTCGTCCACCGCCCGCACAACTCATTTCACGACTTCCTTG
GGCACCGGCATCGCGGTCTGCGAAGCGTGGGGCCAGCGCGCTGCTCGGTT
GAGGTGACGCCTGAGCCCGTCAAAGTGCGATTGCCGGAGAGCAATATGCA
GTTAGCTCCTGCTGAAGTCGATTTTGTGATTGGCGAGGCTCAACATATGG
ACCACCAGATCAGTGGAGTGTTGCCTGGCGGAACCCTTTCTGGGCCGGTC
TAG
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protein sequence of jgi.p|Nanoce1779_2|563933

>mRNA_2380-protein ID=mRNA_2380-protein|Name=jgi.p|Nanoce1779_2|563933|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MPLSRRLLIAITVGLIGTVFLVHRPHNSFHDFLGHRHRGLRSVGPARCSV
EVTPEPVKVRLPESNMQLAPAEVDFVIGEAQHMDHQISGVLPGGTLSGPV
*
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mRNA from alignment at scaffold_5:200566..200868+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2380 ID=mRNA_2380|Name=jgi.p|Nanoce1779_2|563933|organism=Nannochloropsis oceanica|type=mRNA|length=303bp|location=Sequence derived from alignment at scaffold_5:200566..200868+ (Nannochloropsis oceanica)
ATGCCGCTCTCCCGTCGTCTGCTCATTGCTATCACCGTGGGCCTCATCGG
CACAGTTTTTCTCGTCCACCGCCCGCACAACTCATTTCACGACTTCCTTG
GGCACCGGCATCGCGGTCTGCGAAGCGTGGGGCCAGCGCGCTGCTCGGTT
GAGGTGACGCCTGAGCCCGTCAAAGTGCGATTGCCGGAGAGCAATATGCA
GTTAGCTCCTGCTGAAGTCGATTTTGTGATTGGCGAGGCTCAACATATGG
ACCACCAGATCAGTGGAGTGTTGCCTGGCGGAACCCTTTCTGGGCCGGTC
TAG
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Coding sequence (CDS) from alignment at scaffold_5:200566..200868+

>mRNA_2380 ID=mRNA_2380|Name=jgi.p|Nanoce1779_2|563933|organism=Nannochloropsis oceanica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_5:200566..200868+ (Nannochloropsis oceanica)
ATGCCGCTCTCCCGTCGTCTGCTCATTGCTATCACCGTGGGCCTCATCGG
CACAGTTTTTCTCGTCCACCGCCCGCACAACTCATTTCACGACTTCCTTG
GGCACCGGCATCGCGGTCTGCGAAGCGTGGGGCCAGCGCGCTGCTCGGTT
GAGGTGACGCCTGAGCCCGTCAAAGTGCGATTGCCGGAGAGCAATATGCA
GTTAGCTCCTGCTGAAGTCGATTTTGTGATTGGCGAGGCTCAACATATGG
ACCACCAGATCAGTGGAGTGTTGCCTGGCGGAACCCTTTCTGGGCCGGTC
TAG
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Synonyms
Publications