jgi.p|Nanoce1779_2|576636, mRNA_238 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576636
Unique NamemRNA_238
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1705
Alignment locationscaffold_3:591224..593020 -

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Properties
Property NameValue
TranscriptId576722
TrackFilteredModels2
ProteinId576636
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:591224..593020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576636gene_238Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576636mRNA_238-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_238CDS_238Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_238 ID=mRNA_238|Name=jgi.p|Nanoce1779_2|576636|organism=Nannochloropsis oceanica|type=mRNA|length=1705bp
GAGGAATAGGGGATGACAACAATTTCTTGTTGGAAGGCTCCCCCTCGTAT
GCAAGTCCTCGAAGACGTCAGGTTGCATGCGATAGTTCTAGAGAGATGTA
GGAGCGCTCGAAAGAACTATCCAGGCCGACACTCTATTCTATTGTCTATT
GCTATTGTGGAGAGAAACACACTGTCATGGACAGGGCGCTCAGATATTAT
GCACTTAATCCCGCGACAAAAAAACCTCCTGCCTCGACTTCTTGGAGCTT
TCGTCCACATGATCAAGCATTGCATTTGCACCATGCCAACGCCCCTGCAT
CTGGTCATATTCCTCTTCGTCCTGCACGTAGTGATGTCTCTGTCGCCTGC
GATCTGTGCCTTCGAGTCTTCGGCTGCAACCACCATCCGCAGTTTGTTCA
CTTGCACCGCCATTTCCCTGCGGTCAGCTAGCGGCTTGCTGCGCCCCAGG
GGAAGAGGGAGAGGCGACAGCTTGCCACGATTGCTGGGTCGGTCTTCTAC
CTTTGCGTGCCTCCTATACCCACCTATGCCATGGGGGTCTGATCTAATTT
TATCATGGTGCTGCACCTGTATTTTTCTTAGGACAGACGCCTTCCACATG
CATCTCTAGCATGGTAGGTGGGTGTATGTAGTCTCTGCTGTTTTCCTCTA
CCCACCTCCTCTTCGCGTGTTACCAATTCTCCCCCACGCCCGAGACAAAC
AACCCATTCCTTGGCACAAGCTTTGTCTACACAGCAATAGACACAAAACT
TCTTGACTGGAATGGGTAAGAACGAAATTAGATTCCTTTCAATAACAAAC
CACATGGAAGCTAATCCCTCTTCCTTGCGGCGGTCGGAAGGATAAATTCT
TTTTCTAGAGATGAGCTCGCGTTCATACTTGCCCGACACCCGATTCGTTC
ACTTTTCCGTTATTATGGTTACCTTGATGTTAACAATATTTCTCCAACCC
AAAAAAAAGGTAGTTAGACGGCCATCACATCAGCCTGGGCCCATGTGAGT
CGTGGATTAGCACTTGAGAACCTCCCTTAAGGTGAGAAAGTATATGCCTT
GCTTAGTAGGCACGCCATTGAGCGGAAGAAAAACGATAATCTTCCTTTCC
TCCCTTTCACGTGCTTGCCTTATGCTTTTTCTTTTCCGTCGTACTCTCTG
AGTCTATCGTAGTTCTTATTTCCCATCAGGTCACATTTTTTTCCGGGAAG
GCCTTCCTCTTTTTTGCCCACCTAAATAAAGTGTACACATTACCCCCTTA
CCCCCTTTCTTTTAAGGTCACTTTCTTTCTTCAATTATCCCACATTCGTG
CACACAATCACTTGGATCTCTGCTAATCTTCTCACTTTCTTGCTTTGTTC
GGCATCTGCGCACCACCCATCGGCACAAACGGGATTCGACGACGGCTTTC
GTGTTATCCCTTTCTACACATACATTCCATTCATTTTTCCATCTTCCATT
TTCGTCCTTCCAACTCTTGTACATAGTAAGCCTCTCGTTTTAATCTTCCT
TTTTTTTAATTCTTTTGTTCCTTGTTCCTCTTTTGTCCCTCTCTACGAAG
AGCACACGCACACATACACCAACCTACATACATACATATATAAATATATA
TATATATGAGCACACACGCACACACAAACAACCACCTATATATATATATA
TATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGT
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protein sequence of jgi.p|Nanoce1779_2|576636

>mRNA_238-protein ID=mRNA_238-protein|Name=jgi.p|Nanoce1779_2|576636|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MTTISCWKAPPRMQVLEDVRLHAIVLERCRSARKNYPGRHSILLSIAIVE
RNTLSWTGRSDIMHLIPRQKNLLPRLLGAFVHMIKHCICTMPTPLHLVIF
LFVLHVVMSLSPAICAFESSAATTIRSLFTCTAISLRSASGLLRPRGRGR
GDSLPRLLGRSSTFACLLYPPMPWGSDLILSWCCTCIFLRTDAFHMHL*
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mRNA from alignment at scaffold_3:591224..593020-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_238 ID=mRNA_238|Name=jgi.p|Nanoce1779_2|576636|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp|location=Sequence derived from alignment at scaffold_3:591224..593020- (Nannochloropsis oceanica)
GAGGAATAGGGGATGACAACAATTTCTTGTTGGAAGGCTCCCCCTCGTAT
GCAAGTCCTCGAAGACGTCAGGTTGCATGCGATAGTTCTAGAGAGATGTA
GGAGCGCTCGAAAGAACTATCCAGGCCGACACTCTATTCTATTGTCTATT
GCTATTGTGGAGAGAAACACACTGTCATGGACAGGGCGCTCAGATATTAT
GCACTTAATCCCGCGACAAAAAAACCTCCTGCCTCGACTTCTTGGAGCTT
TCGTCCACATGATCAAGCATTGCATTTGCACCATGCCAACGCCCCTGCAT
CTGGTCATATTCCTCTTCGTCCTGCACGTAGTGATGTCTCTGTCGCCTGC
GATCTGTGCCTTCGAGTCTTCGGCTGCAACCACCATCCGCAGGTGAGTGA
CTAGCTGGATGGTGGGGGAGGATTCGTCGTTCGACAAGAAGTACATATAG
CAAGCAACCTTACGCCGTTACCGGACTTGAACAGTTTGTTCACTTGCACC
GCCATTTCCCTGCGGTCAGCTAGCGGCTTGCTGCGCCCCAGGGGAAGAGG
GAGAGGCGACAGCTTGCCACGATTGCTGGGTCGGTCTTCTACCTTTGCGT
GCCTCCTATACCCACCTATGCCATGGGGGTCTGATCTAATTTTATCATGG
TGCTGCACCTGTATTTTTCTTAGGACAGACGCCTTCCACATGCATCTCTA
GCATGGTAGGTGGGTGTATGTAGTCTCTGCTGTTTTCCTCTACCCACCTC
CTCTTCGCGTGTTACCAATTCTCCCCCACGCCCGAGACAAACAACCCATT
CCTTGGCACAAGCTTTGTCTACACAGCAATAGACACAAAACTTCTTGACT
GGAATGGGTAAGAACGAAATTAGATTCCTTTCAATAACAAACCACATGGA
AGCTAATCCCTCTTCCTTGCGGCGGTCGGAAGGATAAATTCTTTTTCTAG
AGATGAGCTCGCGTTCATACTTGCCCGACACCCGATTCGTTCACTTTTCC
GTTATTATGGTTACCTTGATGTTAACAATATTTCTCCAACCCAAAAAAAA
GGTAGTTAGACGGCCATCACATCAGCCTGGGCCCATGTGAGTCGTGGATT
AGCACTTGAGAACCTCCCTTAAGGTGAGAAAGTATATGCCTTGCTTAGTA
GGCACGCCATTGAGCGGAAGAAAAACGATAATCTTCCTTTCCTCCCTTTC
ACGTGCTTGCCTTATGCTTTTTCTTTTCCGTCGTACTCTCTGAGTCTATC
GTAGTTCTTATTTCCCATCAGGTCACATTTTTTTCCGGGAAGGCCTTCCT
CTTTTTTGCCCACCTAAATAAAGTGTACACATTACCCCCTTACCCCCTTT
CTTTTAAGGTCACTTTCTTTCTTCAATTATCCCACATTCGTGCACACAAT
CACTTGGATCTCTGCTAATCTTCTCACTTTCTTGCTTTGTTCGGCATCTG
CGCACCACCCATCGGCACAAACGGGATTCGACGACGGCTTTCGTGTTATC
CCTTTCTACACATACATTCCATTCATTTTTCCATCTTCCATTTTCGTCCT
TCCAACTCTTGTACATAGTAAGCCTCTCGTTTTAATCTTCCTTTTTTTTA
ATTCTTTTGTTCCTTGTTCCTCTTTTGTCCCTCTCTACGAAGAGCACACG
CACACATACACCAACCTACATACATACATATATAAATATATATATATATG
AGCACACACGCACACACAAACAACCACCTATATATATATATATATATATG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
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Coding sequence (CDS) from alignment at scaffold_3:591224..593020-

>mRNA_238 ID=mRNA_238|Name=jgi.p|Nanoce1779_2|576636|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at scaffold_3:591224..593020- (Nannochloropsis oceanica)
TTTGTTCACTTGCACCGCCATTTCCCTGCGGTCAGCTAGCGGCTTGCTGC
GCCCCAGGGGAAGAGGGAGAGGCGACAGCTTGCCACGATTGCTGGGTCGG
TCTTCTACCTTTGCGTGCCTCCTATACCCACCTATGCCATGGGGGTCTGA
TCTAATTTTATCATGGTGCTGCACCTGTATTTTTCTTAGGACAGACGCCT
TCCACATGCATCTCTAGATGACAACAATTTCTTGTTGGAAGGCTCCCCCT
CGTATGCAAGTCCTCGAAGACGTCAGGTTGCATGCGATAGTTCTAGAGAG
ATGTAGGAGCGCTCGAAAGAACTATCCAGGCCGACACTCTATTCTATTGT
CTATTGCTATTGTGGAGAGAAACACACTGTCATGGACAGGGCGCTCAGAT
ATTATGCACTTAATCCCGCGACAAAAAAACCTCCTGCCTCGACTTCTTGG
AGCTTTCGTCCACATGATCAAGCATTGCATTTGCACCATGCCAACGCCCC
TGCATCTGGTCATATTCCTCTTCGTCCTGCACGTAGTGATGTCTCTGTCG
CCTGCGATCTGTGCCTTCGAGTCTTCGGCTGCAACCACCATCCGCAGTTT
GTTCACTTGCACCGCCATTTCCCTGCGGTCAGCTAGCGGCTTGCTGCGCC
CCAGGGGAAGAGGGAGAGGCGACAGCTTGCCACGATTGCTGGGTCGGTCT
TCTACCTTTGCGTGCCTCCTATACCCACCTATGCCATGGGGGTCTGATCT
AATTTTATCATGGTGCTGCACCTGTATTTTTCTTAGGACAGACGCCTTCC
ACATGCATCTCTAGATGACAACAATTTCTTGTTGGAAGGCTCCCCCTCGT
ATGCAAGTCCTCGAAGACGTCAGGTTGCATGCGATAGTTCTAGAGAGATG
TAGGAGCGCTCGAAAGAACTATCCAGGCCGACACTCTATTCTATTGTCTA
TTGCTATTGTGGAGAGAAACACACTGTCATGGACAGGGCGCTCAGATATT
ATGCACTTAATCCCGCGACAAAAAAACCTCCTGCCTCGACTTCTTGGAGC
TTTCGTCCACATGATCAAGCATTGCATTTGCACCATGCCAACGCCCCTGC
ATCTGGTCATATTCCTCTTCGTCCTGCACGTAGTGATGTCTCTGTCGCCT
GCGATCTGTGCCTTCGAGTCTTCGGCTGCAACCACCATCCGCAG
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Synonyms
Publications