jgi.p|Nanoce1779_2|628436, mRNA_2374 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|628436
Unique NamemRNA_2374
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length953
Alignment locationscaffold_5:188026..190513 -

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Properties
Property NameValue
TranscriptId628522
TrackFilteredModels2
ProteinId628436
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:188026..190513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628436gene_2374Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628436mRNA_2374-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2374CDS_2374Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2374 ID=mRNA_2374|Name=jgi.p|Nanoce1779_2|628436|organism=Nannochloropsis oceanica|type=mRNA|length=953bp
ACGATGATGGCCTGATGCCCCCCCTTCCCCCCTCCACCTTCCCCGGACTC
CTCCCCTCTCCTCCCCCACCACATCATCTCGGTACGAGCCCATCCCATCC
TCGTCCCCACCATCTCGGCCCCCATCCCAACGTGAAGAACATGCAAGGCC
AAGGCCAAGGCGGCTGGAATTGGAACACCACTGCGCAGAGTGTTCTCCCC
CCCGGCTCCGTTCCCATCAAATCCGGGAAATTCAGTAAAAGCGAATCACA
GGCCATTCTCCTCTCCGTGCAATCATATTGTGCCGCGCATAACGTAACCG
TCCATCGTCTATGCAGCGAGAACGCGCACCGAGGGGATCTCAAAGGAGCC
TGGTTAGAAATCGCAAAGGTCCTGCCGAATCGAACAGTTCAAGCCGTCTA
TAGGCACGGCCTACGAAAATTACATTCGTTTAAGAGGGGTAAATGGAGCG
AAGAGGAGGAGAGGAGGCTTATGGAACTGGTGGCGGTGAACGGGCCCAAG
TGGGTGAAGTTTCAGGAAGAGTTGAATAGGTCGGCAGATGCCTGTAGGGA
TAAGCATCGGGAGTTGTCGACGGGCGTGATGGGGAAGGCATGGAGAGGAG
GGGAAGGAGGAGGGGGGGGGCTGAATCTGGAGGAGGAGGAAGGTCAAAAG
CTGGAAGAGGAGAGTCTGGAGATGGAGGATGAGAGGGATGGTGGTGGTGG
GAGGGAGCGAGGAAGGGGGAGAGGAGGAGGACATTGTGGTGACGAGCGAG
ACAGCGAGAAGGAGGGGGAGAAGGGGGAGGAAGCGGACGTAGGGGAGGAG
GAGGAGGAGGAGGAGGAAGAGGGGGGGAAGGGCGGGCCGAAGGTGGGGGT
GAAGGGGAGGCGGTTGGTGAAAAAGAGGAAAAGCCCGCATAGGAGGAAGA
GGAAGGGGGATAGGAGGCAGGAGGAGGAGGACTCTGAGACGGAAGAGGAG
TAA
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protein sequence of jgi.p|Nanoce1779_2|628436

>mRNA_2374-protein ID=mRNA_2374-protein|Name=jgi.p|Nanoce1779_2|628436|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MPPLPPSTFPGLLPSPPPPHHLGTSPSHPRPHHLGPHPNVKNMQGQGQGG
WNWNTTAQSVLPPGSVPIKSGKFSKSESQAILLSVQSYCAAHNVTVHRLC
SENAHRGDLKGAWLEIAKVLPNRTVQAVYRHGLRKLHSFKRGKWSEEEER
RLMELVAVNGPKWVKFQEELNRSADACRDKHRELSTGVMGKAWRGGEGGG
GGLNLEEEEGQKLEEESLEMEDERDGGGGRERGRGRGGGHCGDERDSEKE
GEKGEEADVGEEEEEEEEEGGKGGPKVGVKGRRLVKKRKSPHRRKRKGDR
RQEEEDSETEEE*
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mRNA from alignment at scaffold_5:188026..190513-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2374 ID=mRNA_2374|Name=jgi.p|Nanoce1779_2|628436|organism=Nannochloropsis oceanica|type=mRNA|length=2488bp|location=Sequence derived from alignment at scaffold_5:188026..190513- (Nannochloropsis oceanica)
ACGATGATGGCCTGATGCCCCCCCTTCCCCCCTCCACCTTCCCCGGACTC
CTCCCCTCTCCTCCCCCACCACATCATCTCGGTACGAGCCCATCCCATCC
TCGTCCCCACCATCTCGGCCCCCATCCCAACGTGAAGAACATGCAAGGCC
AAGGCCAAGGCGGCTGGAATTGGAACACCACTGCGCAGAGTGTTCTCCCC
CCCGGCTCCGTTCCCATCAAATCCGGGAAATTCAGTAAAAGCGAATCACA
GGCCATTCTCCTCTCCGTGCAATCATATTGTGCCGCGCATAACGTAACCG
TCCATCGTCTATGCAGCGAGAACGCGCACCGAGGGGATCTCAAAGGAGCC
TGGTTAGAAATCGCAAAGGTCCTGCCGAATCGAACAGTTCAAGCCGTCTA
TAGGCACGGCCTACGAAAATTACATTCGTTTAAGAGGGGTAAATGGAGCG
AAGAGGAGGAGAGGAGGCTTATGGAACTGGTGGCGGTGAACGGGCCCAAG
TGGGTGAAGTTTCAGGAAGAGTTGAATAGGTCGGCAGATGCCTGTAGGGA
TAAGCATCGGGAGTTGTCGACGGGCGTGATGGGGAAGGCATGGAGAGGAG
GGGAAGGAGGAGGGGGGGGGCTGAATCTGGAGGAGGAGGAAGGTCAAAAG
CTGGAAGAGGAGAGTCTGGAGATGGAGGATGAGAGGGATGGTGGTGGTGG
TGAAAGGGAGAAGAAGGAGGAGAAGAAAAAGAAGAGGAAGAGGGAGGAGG
ACCAAGGGACAAAGCCACCAGCGGAGGATAAAATCAGCGAAGATTCTTCA
TCCTCCTCCAGCTCCTCAGAGGGTGAGAAAGAGAAGGAGGATCAGGAAGA
AGGAGGAGAAGGAGGTGGTGGCATACGAAAGATGGAGGCTCGGAAGGAGA
AGGAAAGGCACGAAAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAAATG
CAGAGTGAGGGGAAAAAGGGCAAGGAGGGTGAAATGGAAGAAAATGTGAT
AAAGCATCAAGGCGATCAGCGGGAGAAGAACGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGAAGGAAGAGGGGGAGGGGGAGGGGGAGGGGGTTGA
GGGAAAGGGGGACGGTGATGCCCGCCCGGGGATGAACAATTTGGAATCTC
GCGACGTCAAGAAGAAAGCCTCCGGGCGCTGGTCGGAGGAGGAGGAAAAG
CACTTTGTCGATGTGGTGTGTGATTACCTGGGAAGGCCCAGGGGGACGCC
CGTGACCCAACTGCCGAGAGAGGGGATCAACTGGACAGAGGTGGCGCACC
GCCTCCAATCAGCCCGCAGCCGGATTCACTGCTTGAATAAGTGGGGGCAA
ATCCAAGGCAAGTTCCGACGCTTGGAAGAGCGGCAACTGTCAGCGGCAGC
TCTCGCAGCCGCCCAAGGCGGGAATGATTGTGGTGGTGGAGGAGGAGGGG
GGCCCTCCATAGTTCCTCTCCTCTCATCTTCGGCGGCTGCAGCTGTCCCT
CCCTCCCTTCCTCCCCCTGACTTGGAGAGTGTCCCGCGCGCCGCCCCATT
CATCACAACCTGCCTTCACCCGTCCTCCTCCCTGGCCTCTGCCCTCCCTC
TCTCCCTCCCTCCCTCCGCCTCCGCCGCCATAACTGCTGCGGCTGCTTCG
AACTCCTCCACATTCAAACTTGAAAATTTGAATCAAGATTTGAAATTGCT
GGGAAGGCTGATAGAGCTCGCGCCCGCGGAGGAGAGCGAGGTAGTGTGGT
CTCGAATGCCCGTACGGAACGCTCTGCAGCGTTGGGGCAAGCTGAAGGCA
TGGGGACAGCGAGGAGGAGGAGGAGGGGGAGGGGGTAGAAGGGAGGGAGC
GATGATTCCTGTGGGACAGGGAGCGTTTGTGGCGGCGGTGATCGGGATTA
AGGGGGAGGTGGAGGAGGAGCTGAGAAGGACTGTAGCTCGGTTGGAGAAG
AAGGTGGTGAGGGAACAGTATAGCAAGGAGAAGGAGAGGAGGAGGGAGGA
GGATCGGGTCAGATCGCGGGAAAGGAAGGAGGAGAGGAGGAGGAGGAAGG
CTGAGGAGAGAAGGGAGAGGGAGAGGAAAAGGGCGGCAAAAGAGAAAAGG
TTAAGGGAGAAGAGGAGGGAGAGTGGGTTGGAGGCGATCGGAATCTTGGC
CTCCTTGGCCTGTAAGCCTGCGTCGTCGGTGGAGGGAGGGAGCGAGGAAG
GGGGAGAGGAGGAGGACATTGTGGTGACGAGCGAGACAGCGAGAAGGAGG
GGGAGAAGGGGGAGGAAGCGGACGTAGGGGAGGAGGAGGAGGAGGAGGAG
GAAGAGGGGGGGAAGGGCGGGCCGAAGGTGGGGGTGAAGGGGAGGCGGTT
GGTGAAAAAGAGGAAAAGCCCGCATAGGAGGAAGAGGAAGGGGGATAGGA
GGCAGGAGGAGGAGGACTCTGAGACGGAAGAGGAGTAA
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Coding sequence (CDS) from alignment at scaffold_5:188026..190513-

>mRNA_2374 ID=mRNA_2374|Name=jgi.p|Nanoce1779_2|628436|organism=Nannochloropsis oceanica|type=CDS|length=1878bp|location=Sequence derived from alignment at scaffold_5:188026..190513- (Nannochloropsis oceanica)
GGAGGGAGCGAGGAAGGGGGAGAGGAGGAGGACATTGTGGTGACGAGCGA
GACAGCGAGAAGGAGGGGGAGAAGGGGGAGGAAGCGGACGTAGGGGAGGA
GGAGGAGGAGGAGGAGGAAGAGGGGGGGAAGGGCGGGCCGAAGGTGGGGG
TGAAGGGGAGGCGGTTGGTGAAAAAGAGGAAAAGCCCGCATAGGAGGAAG
AGGAAGGGGGATAGGAGGCAGGAGGAGGAGGACTCTGAGACGGAAGAGGA
GTAAATGCCCCCCCTTCCCCCCTCCACCTTCCCCGGACTCCTCCCCTCTC
CTCCCCCACCACATCATCTCGGTACGAGCCCATCCCATCCTCGTCCCCAC
CATCTCGGCCCCCATCCCAACGTGAAGAACATGCAAGGCCAAGGCCAAGG
CGGCTGGAATTGGAACACCACTGCGCAGAGTGTTCTCCCCCCCGGCTCCG
TTCCCATCAAATCCGGGAAATTCAGTAAAAGCGAATCACAGGCCATTCTC
CTCTCCGTGCAATCATATTGTGCCGCGCATAACGTAACCGTCCATCGTCT
ATGCAGCGAGAACGCGCACCGAGGGGATCTCAAAGGAGCCTGGTTAGAAA
TCGCAAAGGTCCTGCCGAATCGAACAGTTCAAGCCGTCTATAGGCACGGC
CTACGAAAATTACATTCGTTTAAGAGGGGTAAATGGAGCGAAGAGGAGGA
GAGGAGGCTTATGGAACTGGTGGCGGTGAACGGGCCCAAGTGGGTGAAGT
TTCAGGAAGAGTTGAATAGGTCGGCAGATGCCTGTAGGGATAAGCATCGG
GAGTTGTCGACGGGCGTGATGGGGAAGGCATGGAGAGGAGGGGAAGGAGG
AGGGGGGGGGCTGAATCTGGAGGAGGAGGAAGGTCAAAAGCTGGAAGAGG
AGAGTCTGGAGATGGAGGATGAGAGGGATGGTGGTGGTGGGAGGGAGCGA
GGAAGGGGGAGAGGAGGAGGACATTGTGGTGACGAGCGAGACAGCGAGAA
GGAGGGGGAGAAGGGGGAGGAAGCGGACGTAGGGGAGGAGGAGGAGGAGG
AGGAGGAAGAGGGGGGGAAGGGCGGGCCGAAGGTGGGGGTGAAGGGGAGG
CGGTTGGTGAAAAAGAGGAAAAGCCCGCATAGGAGGAAGAGGAAGGGGGA
TAGGAGGCAGGAGGAGGAGGACTCTGAGACGGAAGAGGAGTAAATGCCCC
CCCTTCCCCCCTCCACCTTCCCCGGACTCCTCCCCTCTCCTCCCCCACCA
CATCATCTCGGTACGAGCCCATCCCATCCTCGTCCCCACCATCTCGGCCC
CCATCCCAACGTGAAGAACATGCAAGGCCAAGGCCAAGGCGGCTGGAATT
GGAACACCACTGCGCAGAGTGTTCTCCCCCCCGGCTCCGTTCCCATCAAA
TCCGGGAAATTCAGTAAAAGCGAATCACAGGCCATTCTCCTCTCCGTGCA
ATCATATTGTGCCGCGCATAACGTAACCGTCCATCGTCTATGCAGCGAGA
ACGCGCACCGAGGGGATCTCAAAGGAGCCTGGTTAGAAATCGCAAAGGTC
CTGCCGAATCGAACAGTTCAAGCCGTCTATAGGCACGGCCTACGAAAATT
ACATTCGTTTAAGAGGGGTAAATGGAGCGAAGAGGAGGAGAGGAGGCTTA
TGGAACTGGTGGCGGTGAACGGGCCCAAGTGGGTGAAGTTTCAGGAAGAG
TTGAATAGGTCGGCAGATGCCTGTAGGGATAAGCATCGGGAGTTGTCGAC
GGGCGTGATGGGGAAGGCATGGAGAGGAGGGGAAGGAGGAGGGGGGGGGC
TGAATCTGGAGGAGGAGGAAGGTCAAAAGCTGGAAGAGGAGAGTCTGGAG
ATGGAGGATGAGAGGGATGGTGGTGGTG
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Synonyms
Publications