jgi.p|Nanoce1779_2|580149, mRNA_2373 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580149
Unique NamemRNA_2373
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length979
Alignment locationscaffold_5:186686..187664 -

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Properties
Property NameValue
TranscriptId580235
TrackFilteredModels2
ProteinId580149
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:186686..187664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580149gene_2373Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580149mRNA_2373-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2373CDS_2373Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2373 ID=mRNA_2373|Name=jgi.p|Nanoce1779_2|580149|organism=Nannochloropsis oceanica|type=mRNA|length=979bp
AAAAGTCGAATCGAATGGAAAGAGGAAGGAGGAAATGGAGTTTTAATAAA
AGCAGCAGCAGCAGCAGCAGCAGAAACGCAATCAAAAGCAGAAGTAACAA
GCGAAACACGGAAAGCGATAGTAAAAGACAAGTGTGTCAGTCACACAAGA
ATGAACACCCTCCTGGCATTCAGTGGTTGTTGATTTCTCCTCTTGTTTTC
CCCCCCTTCTCCCCCTCGAGGCGTCGGTGGCTACATCGCATTGCAGTACC
TTCCATCGTCGGCCTTTTTCCATGCACAAAAGAAGTAAGCAATGCTGTGC
TTCCGACGTCCCTCCTTCTTGTCTGCTCGGCACTTCTCTTTGTCAGAGAT
CTCGGCAGCCCAGTGCGTGTGACATGGCATGCGTCTCTCTCTCTATCGCC
CTCGCATTTCCTTGGCCGTCCTTTCACTCGCTCGTTTTTCTCGTTTTCTT
ATGTGTTCCTCTCCTTTGCCCTGTTGATATTTCCTTTCTTCTCTCATGCG
TCCCTTGGCTTCATCAACAAAGACATATCACTGATGTCGTCCGTATTGTT
CCGTACTGTTCATTGCATTCCTACAATTTACTCGGTCTCGTGTGCTTTCG
ACCTATATGTCTATACATATATGTATGATATATATCCTCATACGTTGTTT
TTCCTCCTCCGCCTTTATTCATTCACGCACGTGATACACACACATCCACA
GAGAAGACGCTGTATATATGTTTTGTGTCCTATCTGACTCCAGCAGTCCT
CTTCTATATTCGTACTTTATTGACTTCTTCCTCTCACACATACGTATCCA
CAATTTGTCCACGATCTAACGCATGTCCTCCGTCTTCCTTCCCTCCCTTC
TTCTCTCCCTCTATCCCTGCTTCCACGCTCGCCCTTGTGTCTTTCCGACC
ATAGCACCCACATGCATTCCTACACACAAATACCACCACACACCACACAC
ACCCACGCACACACCCACACACCCACCCA
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protein sequence of jgi.p|Nanoce1779_2|580149

>mRNA_2373-protein ID=mRNA_2373-protein|Name=jgi.p|Nanoce1779_2|580149|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MERGRRKWSFNKSSSSSSSRNAIKSRSNKRNTESDSKRQVCQSHKNEHPP
GIQWLLISPLVFPPFSPSRRRWLHRIAVPSIVGLFPCTKEVSNAVLPTSL
LLVCSALLFVRDLGSPVRVTWHASLSLSPSHFLGRPFTRSFFSFSYVFLS
FALLIFPFFSHASLGFINKDISLMSSVLFRTVHCIPTIYSVSCAFDLYVY
TYMYDIYPHTLFFLLRLYSFTHVIHTHPQRRRCIYVLCPI*
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mRNA from alignment at scaffold_5:186686..187664-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2373 ID=mRNA_2373|Name=jgi.p|Nanoce1779_2|580149|organism=Nannochloropsis oceanica|type=mRNA|length=979bp|location=Sequence derived from alignment at scaffold_5:186686..187664- (Nannochloropsis oceanica)
AAAAGTCGAATCGAATGGAAAGAGGAAGGAGGAAATGGAGTTTTAATAAA
AGCAGCAGCAGCAGCAGCAGCAGAAACGCAATCAAAAGCAGAAGTAACAA
GCGAAACACGGAAAGCGATAGTAAAAGACAAGTGTGTCAGTCACACAAGA
ATGAACACCCTCCTGGCATTCAGTGGTTGTTGATTTCTCCTCTTGTTTTC
CCCCCCTTCTCCCCCTCGAGGCGTCGGTGGCTACATCGCATTGCAGTACC
TTCCATCGTCGGCCTTTTTCCATGCACAAAAGAAGTAAGCAATGCTGTGC
TTCCGACGTCCCTCCTTCTTGTCTGCTCGGCACTTCTCTTTGTCAGAGAT
CTCGGCAGCCCAGTGCGTGTGACATGGCATGCGTCTCTCTCTCTATCGCC
CTCGCATTTCCTTGGCCGTCCTTTCACTCGCTCGTTTTTCTCGTTTTCTT
ATGTGTTCCTCTCCTTTGCCCTGTTGATATTTCCTTTCTTCTCTCATGCG
TCCCTTGGCTTCATCAACAAAGACATATCACTGATGTCGTCCGTATTGTT
CCGTACTGTTCATTGCATTCCTACAATTTACTCGGTCTCGTGTGCTTTCG
ACCTATATGTCTATACATATATGTATGATATATATCCTCATACGTTGTTT
TTCCTCCTCCGCCTTTATTCATTCACGCACGTGATACACACACATCCACA
GAGAAGACGCTGTATATATGTTTTGTGTCCTATCTGACTCCAGCAGTCCT
CTTCTATATTCGTACTTTATTGACTTCTTCCTCTCACACATACGTATCCA
CAATTTGTCCACGATCTAACGCATGTCCTCCGTCTTCCTTCCCTCCCTTC
TTCTCTCCCTCTATCCCTGCTTCCACGCTCGCCCTTGTGTCTTTCCGACC
ATAGCACCCACATGCATTCCTACACACAAATACCACCACACACCACACAC
ACCCACGCACACACCCACACACCCACCCA
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Coding sequence (CDS) from alignment at scaffold_5:186686..187664-

>mRNA_2373 ID=mRNA_2373|Name=jgi.p|Nanoce1779_2|580149|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at scaffold_5:186686..187664- (Nannochloropsis oceanica)
ATGGAAAGAGGAAGGAGGAAATGGAGTTTTAATAAAAGCAGCAGCAGCAG
CAGCAGCAGAAACGCAATCAAAAGCAGAAGTAACAAGCGAAACACGGAAA
GCGATAGTAAAAGACAAGTGTGTCAGTCACACAAGAATGAACACCCTCCT
GGCATTCAGTGGTTGTTGATTTCTCCTCTTGTTTTCCCCCCCTTCTCCCC
CTCGAGGCGTCGGTGGCTACATCGCATTGCAGTACCTTCCATCGTCGGCC
TTTTTCCATGCACAAAAGAAGTAAGCAATGCTGTGCTTCCGACGTCCCTC
CTTCTTGTCTGCTCGGCACTTCTCTTTGTCAGAGATCTCGGCAGCCCAGT
GCGTGTGACATGGCATGCGTCTCTCTCTCTATCGCCCTCGCATTTCCTTG
GCCGTCCTTTCACTCGCTCGTTTTTCTCGTTTTCTTATGTGTTCCTCTCC
TTTGCCCTGTTGATATTTCCTTTCTTCTCTCATGCGTCCCTTGGCTTCAT
CAACAAAGACATATCACTGATGTCGTCCGTATTGTTCCGTACTGTTCATT
GCATTCCTACAATTTACTCGGTCTCGTGTGCTTTCGACCTATATGTCTAT
ACATATATGTATGATATATATCCTCATACGTTGTTTTTCCTCCTCCGCCT
TTATTCATTCACGCACGTGATACACACACATCCACAGAGAAGACGCTGTA
TATATGTTTTGTGTCCTATCTGA
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Synonyms
Publications