jgi.p|Nanoce1779_2|576631, mRNA_237 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576631
Unique Name	mRNA_237
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2331
Alignment location	scaffold_3:588819..591149 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576717
Track	FilteredModels2
ProteinId	576631

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:588819..591149 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576631	gene_237	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576631	mRNA_237-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_237	CDS_237	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:588819..591149+
coding sequence from alignment at scaffold_3:588819..591149+

mRNA sequence

>mRNA_237 ID=mRNA_237|Name=jgi.p|Nanoce1779_2|576631|organism=Nannochloropsis oceanica|type=mRNA|length=2331bp
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGATCGAGAGGAGCAAGAG
CAGAAGCAAAAGGGAAAATATGGACAAGTGAGCAAGAAGCGAAGCAGCTT
GACGCGCAGCTCTACGGGGTCGACGATTTCCCGGCGCCGCAGCAGTGGGG
CAGGAGACAGGACCTCCTCCCCCTTTGCTCACATCGTGGTTGGAAGCCGC
CTGCGTGGCGCTCCTGCTACCGCTGCTGATGCTGATGCTGGTGCTGATGC
CGACCCTGAGAGTACGGACAGCTTGGTGGTCTCGGCGATGACAGGAGAGA
GGAAGCGACATCCCTCCACGTCTTGCACTTCTTCCCCTTTTACCTCCTCG
GAAGATCGCCACAAGCGCCACAAAAGCCTGCGTGAGGTCTCCGCGACCGC
TCTGGCGGAGGCCGAGGAAGTGAGCACTGCTATGCCGATTGAATTTGACT
GGCAACGGGTGGTGGCTTTCCAGCAAGAGCGGGGCAACATCATGCGCCTA
GTTGGGGTGATGAAGGAGGGAAAACAGGAGGGAGAAAAGGAGGGCATGCC
AGTGGCTCTATTGCGGCAGGCTGTCTTGGAGTCATTGCTGGAGAATTGTG
AGAGTGTGGCACTGAACCAGTTGCAGCGTGGGGACGAGGTGGACGGTAGC
AAGGCGATCGAGGCTGACGGGGATGAAGGAAAGCAAAAAACGGGGGATAA
GGGGGTGGAGTTTGATGTGCAGGATGTAGAGGCCCTTCAGGAGGCTATGC
TGGCGGCCTTAACGCTACCCTCGGCGGCTAAGAACGAGGGGGAGGGAGGG
ACCGAGGATCAAGCAGTTGCGATGAAGCAATTGATCGCAGCCGTGGCCCC
TCGTTTGGAGCTTGAGTGGCAGTCGTTGGAGAGTCAGCTGCTTCAGATGG
TGCGCATGCGCGTGACGCAAGAGATGGGGACCCTGAAGAAACGAAGCGTG
GAGCTAGCGGCTGACATGGAGAGGGTGTCTGCCATCGAGGGTGAGGTCCA
GGAGGCGATCGGTGTGCTGCAGGCCAAGTGTATGGTCTTGCGGGCTCAAC
GAAAGGATGCCGACCGCCAGCACCGTTTGGAGGAGCTTGAAGCTCGGCAA
CGAGAGGCATCTGAGCGAGCGGTGGCATTGGCTAAGCATGAGGAAGCGTT
GAAAATGGCTGTTTTCCGGGAAAAAGAAGCAGCCAAGACCCGTGATGCCG
CGCGACAGATGATTTCACAAATCCGCGCGGCACTGACGGAGAAAAATCGA
GAAGCAGAGGCGGTGCAAGCTATCGAGGAAAAGGGGCGTGTCTTGCGGGG
TTTGTTCCTGTGGCAGCCTTTGGTGTTGACAAATGAAGAGCTATCTTTCG
CATGCGCCCACCCCGATGGTTCCCGGACGGAAGTGCGCCTCCTGCTTAAG
GGAAATGGCACCGGTGCCTCTGAAAAAGTGGTGGTGACAGACGCACAAGT
CACGCACATGCCCCCCGCCCCCGGCCGAAATAATCGCGAGCAAATTGGCC
GCATAATGTGCGGCCCCAACAGCCGCACCCTTCTCCTTCATACCCTGCGG
AGCTTGACAATATTTACGTCCATGGAGCCCCCTCCCCCCCCGCCTTCCTC
TATAGCCACTACGGTGACAGGTAAGCATGCGCACGCCTTGTGGGCTCAGG
GGATGCAGTGCTGGTCGTGGAAGAGCCTGTGTGTGGATGTCGCTGATGTT
CCAGGGGCGTTGGCACGATTAGAGCGTTTATTGGGTCGGACACATCTGCT
CATGGAGGCAGTGGCACGGCTGGAAGCTGTCTATCCCTGCACCTTGGTGG
TGGGTGAGGCGGCAGTCCGCTCAGAGGCATGGGTGGAGGAATGCTTGTAC
GGCGCGTGCACGACCTGTCGGTTCGACCATGGACAGAGTGGAGGGGGGGG
GGCTCCACACATTCGCCTGCCTCATTGCTCGGCCGTACTAGTGGCGACTG
TTCAACCCTCCACCGTCAAGAGGGGTGTGAATTACCCGGCCGTGCAGGCG
AAATTCCTCCTTTCACTTTCCTTCCTTGCCAGCATACCCCTCCGTGTGGA
ACCGGCGCTGGATGCAAGCAAGCTGGGCTGTTTACAGAAAGTGGAAGGGC
TGCTCACGAATCGCTTGGGGGTGCCGCCGCATCATCCCATTAATATTCAA
GCGAGGAAGGGATGGCAGGCGGCGGACATGCTGGTGGAGGCGTGTCGCGT
GCTCAAGGAGGAAGGCGGACTGTAGGTGCGCCTCTTGGATTTTTGTCGAC
ATGTACCCCCTTCCCCACTCACCCACCCACCCACCCACAAAACAAACACA
CACACACGCACACAAACACACACACACACAC

protein sequence of jgi.p|Nanoce1779_2|576631

>mRNA_237-protein ID=mRNA_237-protein|Name=jgi.p|Nanoce1779_2|576631|organism=Nannochloropsis oceanica|type=polypeptide|length=646bp
MTGERKRHPSTSCTSSPFTSSEDRHKRHKSLREVSATALAEAEEVSTAMP
IEFDWQRVVAFQQERGNIMRLVGVMKEGKQEGEKEGMPVALLRQAVLESL
LENCESVALNQLQRGDEVDGSKAIEADGDEGKQKTGDKGVEFDVQDVEAL
QEAMLAALTLPSAAKNEGEGGTEDQAVAMKQLIAAVAPRLELEWQSLESQ
LLQMVRMRVTQEMGTLKKRSVELAADMERVSAIEGEVQEAIGVLQAKCMV
LRAQRKDADRQHRLEELEARQREASERAVALAKHEEALKMAVFREKEAAK
TRDAARQMISQIRAALTEKNREAEAVQAIEEKGRVLRGLFLWQPLVLTNE
ELSFACAHPDGSRTEVRLLLKGNGTGASEKVVVTDAQVTHMPPAPGRNNR
EQIGRIMCGPNSRTLLLHTLRSLTIFTSMEPPPPPPSSIATTVTGKHAHA
LWAQGMQCWSWKSLCVDVADVPGALARLERLLGRTHLLMEAVARLEAVYP
CTLVVGEAAVRSEAWVEECLYGACTTCRFDHGQSGGGGAPHIRLPHCSAV
LVATVQPSTVKRGVNYPAVQAKFLLSLSFLASIPLRVEPALDASKLGCLQ
KVEGLLTNRLGVPPHHPINIQARKGWQAADMLVEACRVLKEEGGL*

mRNA from alignment at scaffold_3:588819..591149+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_237 ID=mRNA_237|Name=jgi.p|Nanoce1779_2|576631|organism=Nannochloropsis oceanica|type=mRNA|length=2331bp|location=Sequence derived from alignment at scaffold_3:588819..591149+ (Nannochloropsis oceanica)
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGATCGAGAGGAGCAAGAG
CAGAAGCAAAAGGGAAAATATGGACAAGTGAGCAAGAAGCGAAGCAGCTT
GACGCGCAGCTCTACGGGGTCGACGATTTCCCGGCGCCGCAGCAGTGGGG
CAGGAGACAGGACCTCCTCCCCCTTTGCTCACATCGTGGTTGGAAGCCGC
CTGCGTGGCGCTCCTGCTACCGCTGCTGATGCTGATGCTGGTGCTGATGC
CGACCCTGAGAGTACGGACAGCTTGGTGGTCTCGGCGATGACAGGAGAGA
GGAAGCGACATCCCTCCACGTCTTGCACTTCTTCCCCTTTTACCTCCTCG
GAAGATCGCCACAAGCGCCACAAAAGCCTGCGTGAGGTCTCCGCGACCGC
TCTGGCGGAGGCCGAGGAAGTGAGCACTGCTATGCCGATTGAATTTGACT
GGCAACGGGTGGTGGCTTTCCAGCAAGAGCGGGGCAACATCATGCGCCTA
GTTGGGGTGATGAAGGAGGGAAAACAGGAGGGAGAAAAGGAGGGCATGCC
AGTGGCTCTATTGCGGCAGGCTGTCTTGGAGTCATTGCTGGAGAATTGTG
AGAGTGTGGCACTGAACCAGTTGCAGCGTGGGGACGAGGTGGACGGTAGC
AAGGCGATCGAGGCTGACGGGGATGAAGGAAAGCAAAAAACGGGGGATAA
GGGGGTGGAGTTTGATGTGCAGGATGTAGAGGCCCTTCAGGAGGCTATGC
TGGCGGCCTTAACGCTACCCTCGGCGGCTAAGAACGAGGGGGAGGGAGGG
ACCGAGGATCAAGCAGTTGCGATGAAGCAATTGATCGCAGCCGTGGCCCC
TCGTTTGGAGCTTGAGTGGCAGTCGTTGGAGAGTCAGCTGCTTCAGATGG
TGCGCATGCGCGTGACGCAAGAGATGGGGACCCTGAAGAAACGAAGCGTG
GAGCTAGCGGCTGACATGGAGAGGGTGTCTGCCATCGAGGGTGAGGTCCA
GGAGGCGATCGGTGTGCTGCAGGCCAAGTGTATGGTCTTGCGGGCTCAAC
GAAAGGATGCCGACCGCCAGCACCGTTTGGAGGAGCTTGAAGCTCGGCAA
CGAGAGGCATCTGAGCGAGCGGTGGCATTGGCTAAGCATGAGGAAGCGTT
GAAAATGGCTGTTTTCCGGGAAAAAGAAGCAGCCAAGACCCGTGATGCCG
CGCGACAGATGATTTCACAAATCCGCGCGGCACTGACGGAGAAAAATCGA
GAAGCAGAGGCGGTGCAAGCTATCGAGGAAAAGGGGCGTGTCTTGCGGGG
TTTGTTCCTGTGGCAGCCTTTGGTGTTGACAAATGAAGAGCTATCTTTCG
CATGCGCCCACCCCGATGGTTCCCGGACGGAAGTGCGCCTCCTGCTTAAG
GGAAATGGCACCGGTGCCTCTGAAAAAGTGGTGGTGACAGACGCACAAGT
CACGCACATGCCCCCCGCCCCCGGCCGAAATAATCGCGAGCAAATTGGCC
GCATAATGTGCGGCCCCAACAGCCGCACCCTTCTCCTTCATACCCTGCGG
AGCTTGACAATATTTACGTCCATGGAGCCCCCTCCCCCCCCGCCTTCCTC
TATAGCCACTACGGTGACAGGTAAGCATGCGCACGCCTTGTGGGCTCAGG
GGATGCAGTGCTGGTCGTGGAAGAGCCTGTGTGTGGATGTCGCTGATGTT
CCAGGGGCGTTGGCACGATTAGAGCGTTTATTGGGTCGGACACATCTGCT
CATGGAGGCAGTGGCACGGCTGGAAGCTGTCTATCCCTGCACCTTGGTGG
TGGGTGAGGCGGCAGTCCGCTCAGAGGCATGGGTGGAGGAATGCTTGTAC
GGCGCGTGCACGACCTGTCGGTTCGACCATGGACAGAGTGGAGGGGGGGG
GGCTCCACACATTCGCCTGCCTCATTGCTCGGCCGTACTAGTGGCGACTG
TTCAACCCTCCACCGTCAAGAGGGGTGTGAATTACCCGGCCGTGCAGGCG
AAATTCCTCCTTTCACTTTCCTTCCTTGCCAGCATACCCCTCCGTGTGGA
ACCGGCGCTGGATGCAAGCAAGCTGGGCTGTTTACAGAAAGTGGAAGGGC
TGCTCACGAATCGCTTGGGGGTGCCGCCGCATCATCCCATTAATATTCAA
GCGAGGAAGGGATGGCAGGCGGCGGACATGCTGGTGGAGGCGTGTCGCGT
GCTCAAGGAGGAAGGCGGACTGTAGGTGCGCCTCTTGGATTTTTGTCGAC
ATGTACCCCCTTCCCCACTCACCCACCCACCCACCCACAAAACAAACACA
CACACACGCACACAAACACACACACACACAC

Coding sequence (CDS) from alignment at scaffold_3:588819..591149+

>mRNA_237 ID=mRNA_237|Name=jgi.p|Nanoce1779_2|576631|organism=Nannochloropsis oceanica|type=CDS|length=1938bp|location=Sequence derived from alignment at scaffold_3:588819..591149+ (Nannochloropsis oceanica)
ATGACAGGAGAGAGGAAGCGACATCCCTCCACGTCTTGCACTTCTTCCCC
TTTTACCTCCTCGGAAGATCGCCACAAGCGCCACAAAAGCCTGCGTGAGG
TCTCCGCGACCGCTCTGGCGGAGGCCGAGGAAGTGAGCACTGCTATGCCG
ATTGAATTTGACTGGCAACGGGTGGTGGCTTTCCAGCAAGAGCGGGGCAA
CATCATGCGCCTAGTTGGGGTGATGAAGGAGGGAAAACAGGAGGGAGAAA
AGGAGGGCATGCCAGTGGCTCTATTGCGGCAGGCTGTCTTGGAGTCATTG
CTGGAGAATTGTGAGAGTGTGGCACTGAACCAGTTGCAGCGTGGGGACGA
GGTGGACGGTAGCAAGGCGATCGAGGCTGACGGGGATGAAGGAAAGCAAA
AAACGGGGGATAAGGGGGTGGAGTTTGATGTGCAGGATGTAGAGGCCCTT
CAGGAGGCTATGCTGGCGGCCTTAACGCTACCCTCGGCGGCTAAGAACGA
GGGGGAGGGAGGGACCGAGGATCAAGCAGTTGCGATGAAGCAATTGATCG
CAGCCGTGGCCCCTCGTTTGGAGCTTGAGTGGCAGTCGTTGGAGAGTCAG
CTGCTTCAGATGGTGCGCATGCGCGTGACGCAAGAGATGGGGACCCTGAA
GAAACGAAGCGTGGAGCTAGCGGCTGACATGGAGAGGGTGTCTGCCATCG
AGGGTGAGGTCCAGGAGGCGATCGGTGTGCTGCAGGCCAAGTGTATGGTC
TTGCGGGCTCAACGAAAGGATGCCGACCGCCAGCACCGTTTGGAGGAGCT
TGAAGCTCGGCAACGAGAGGCATCTGAGCGAGCGGTGGCATTGGCTAAGC
ATGAGGAAGCGTTGAAAATGGCTGTTTTCCGGGAAAAAGAAGCAGCCAAG
ACCCGTGATGCCGCGCGACAGATGATTTCACAAATCCGCGCGGCACTGAC
GGAGAAAAATCGAGAAGCAGAGGCGGTGCAAGCTATCGAGGAAAAGGGGC
GTGTCTTGCGGGGTTTGTTCCTGTGGCAGCCTTTGGTGTTGACAAATGAA
GAGCTATCTTTCGCATGCGCCCACCCCGATGGTTCCCGGACGGAAGTGCG
CCTCCTGCTTAAGGGAAATGGCACCGGTGCCTCTGAAAAAGTGGTGGTGA
CAGACGCACAAGTCACGCACATGCCCCCCGCCCCCGGCCGAAATAATCGC
GAGCAAATTGGCCGCATAATGTGCGGCCCCAACAGCCGCACCCTTCTCCT
TCATACCCTGCGGAGCTTGACAATATTTACGTCCATGGAGCCCCCTCCCC
CCCCGCCTTCCTCTATAGCCACTACGGTGACAGGTAAGCATGCGCACGCC
TTGTGGGCTCAGGGGATGCAGTGCTGGTCGTGGAAGAGCCTGTGTGTGGA
TGTCGCTGATGTTCCAGGGGCGTTGGCACGATTAGAGCGTTTATTGGGTC
GGACACATCTGCTCATGGAGGCAGTGGCACGGCTGGAAGCTGTCTATCCC
TGCACCTTGGTGGTGGGTGAGGCGGCAGTCCGCTCAGAGGCATGGGTGGA
GGAATGCTTGTACGGCGCGTGCACGACCTGTCGGTTCGACCATGGACAGA
GTGGAGGGGGGGGGGCTCCACACATTCGCCTGCCTCATTGCTCGGCCGTA
CTAGTGGCGACTGTTCAACCCTCCACCGTCAAGAGGGGTGTGAATTACCC
GGCCGTGCAGGCGAAATTCCTCCTTTCACTTTCCTTCCTTGCCAGCATAC
CCCTCCGTGTGGAACCGGCGCTGGATGCAAGCAAGCTGGGCTGTTTACAG
AAAGTGGAAGGGCTGCTCACGAATCGCTTGGGGGTGCCGCCGCATCATCC
CATTAATATTCAAGCGAGGAAGGGATGGCAGGCGGCGGACATGCTGGTGG
AGGCGTGTCGCGTGCTCAAGGAGGAAGGCGGACTGTAG

Synonyms

Publications