jgi.p|Nanoce1779_2|327334, mRNA_2369 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|327334
Unique NamemRNA_2369
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1294
Alignment locationscaffold_5:172221..173903 -

Link to JBrowse

Properties
Property NameValue
TranscriptId327420
TrackFilteredModels2
ProteinId327334
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:172221..173903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|327334gene_2369Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|327334mRNA_2369-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2369CDS_2369Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2369 ID=mRNA_2369|Name=jgi.p|Nanoce1779_2|327334|organism=Nannochloropsis oceanica|type=mRNA|length=1294bp
CAGTACACGCTGCTCGAATCCCTTTCTCCTCACTTTTTCCCATCGTCTAA
CACTCACTGCACAGGTGCATGGACGATAATGGCTTCGTTCCCCCACACCT
TGAAAGGATTGCGTGGGAGCGGCGGCTAGTCCGTGGCTTGGCTGGGCACA
CATTTAGTGAAACACTTTTGATCACGGAGCCATCGGCTTCTGATGGTGCT
GATCGAGATGACATACGAGAGGGAAGGCAACCGCAACCGCGTCCCCCATG
GCCCCTGCTACGACGAGATGCATCAAGAGCCTATTTGTTGCTTCGCCTCC
TGTCCCATGACAAGCTCCATGTGGCCACGATACTGGCCTCTGAAGTTCGA
GAAGACAAGGCCACTGGCATCATGATCCAAGAAACGGGGCCATACTATGT
GGTCAAGGTCGTCCGCCTAGACTGCCTGGCCATCGACCCGATCGAAAACC
CCTTCAACGAAGCAGCCGCCCTCCAGCTCCTCCTACAAAACGAAGGCCTC
CTTGGAACCCTCCCGCCCTCCCTCCCTCGCCTCCATGCAGCTTTCAAAGA
CCAACACCACCTGTACCTCATGACACCCTACGCTCCTGGTGGAGACCTGT
TCAACTACCTCGCTCGTCGTCCCCCCGCCCGCCGACATCTCTCTGAACGC
AAGGCCTGTGCCTTTCTTTTGGACATCGTCGAAGCGTTGACTTACTTGAA
AAAAAACGGCATGGCGCACAGGGACGTGTCGCTCGAAAACGTGGTCTTGG
CCCTGGGCGAGGTCATGACGGAGGAAGAGGTTTGGAGGGAGGAAGCAGAA
GATTGGATTGGGAGCGCTCCTTCGGCGCTATACCCGGTAGCAGGAGGAGG
AGGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGCAGGAGGGC
AACAGCGAAGGGTGCACGACCAGCTACGGGCCTGCCCCTCCTCCCGGCAG
TCACGGTCCGACCCACCACCAGCAGGCTGGTCACGTCCCCATTACCGTTG
GGCAAGAAATGCGAGCCGCTGAAGCCTCGGCCCTTGAGCCTTCCCCCCCC
CCTCAAGCCCATCACTACCGCCACCACTACTACAACGTTCTCCACCCTCC
CTCCTCCTCCTCATCCCCCTCCTACTCCTCCAACAGCTCTTCAGCCTCCC
CTCCGCCCCACCCCTCCCTCCCTCCCCCACCCCGCCGCCATTGGCGGTGC
ACCCTCATCGACCTAGGAATGGCTTCCCGCCTGCCCGAATCCAAAGACGG
CATTAAAATTCGAAGATCCTACCATCAAAGCAGGGGCAAACCGG
back to top

protein sequence of jgi.p|Nanoce1779_2|327334

>mRNA_2369-protein ID=mRNA_2369-protein|Name=jgi.p|Nanoce1779_2|327334|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MDDNGFVPPHLERIAWERRLVRGLAGHTFSETLLITEPSASDGADRDDIR
EGRQPQPRPPWPLLRRDASRAYLLLRLLSHDKLHVATILASEVREDKATG
IMIQETGPYYVVKVVRLDCLAIDPIENPFNEAAALQLLLQNEGLLGTLPP
SLPRLHAAFKDQHHLYLMTPYAPGGDLFNYLARRPPARRHLSERKACAFL
LDIVEALTYLKKNGMAHRDVSLENVVLALGEVMTEEEVWREEAEDWIGSA
PSALYPVAGGGGGAAAAAAAAAAVAGGQQRRVHDQLRACPSSRQSRSDPP
PAGWSRPHYRWARNASR*
back to top

mRNA from alignment at scaffold_5:172221..173903-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2369 ID=mRNA_2369|Name=jgi.p|Nanoce1779_2|327334|organism=Nannochloropsis oceanica|type=mRNA|length=1683bp|location=Sequence derived from alignment at scaffold_5:172221..173903- (Nannochloropsis oceanica)
CAGTACACGCTGCTCGAATCCCTTTCTCCTCACTTTTTCCCATCGTCTAA
CACTCACTGCACAGGTGCATGGACGATAATGGCTTCGTTCCCCCACACCT
TGAAAGGATTGCGTGGGAGCGGCGGCTAGTCCGTGGCTTGGCTGGGCACA
CATTTAGTGAAACACTTTTGATCACGGAGCCATCGGCTTCTGATGGTGCT
GATCGAGATGACATACGAGAGGGAAGGCAACCGCAACCGCGTCCCCCATG
GCCCCTGCTACGACGAGATGCATCAAGAGCCTATTTGTTGCTTCGCCTCC
TGTCCCATGACAAGCTCCATGTGGCCACGATACTGGCCTCTGAAGTTCGA
GAAGACAAGGCCACTGGCATCATGATCCAAGAAACGGGGCCATACTATGT
GGTCAAGGTGAGTCAGAGGGAAAGGAAGGGCGGGTGGGGGAAGGGGGGAG
CACAGGGTATCTCATAAGTTCAACCAGCTGGTGGGCAGCATTAAGGAAGA
AGCCCCTTGACAGGGGAGGGAGGAAAGGCCCCCCGAAAGTCGTCGGAGTT
TTTCCCCTGATTCCACCTCTAATACTATCTTACCCCTTTCCTCCCTCTTC
ATCGATGAATCACGCTCAACAGCCGTCGAAATCTTACTGCTCTACCCCAT
CCTATTACACTTACCCCCTTTGTCCCTGCCTCAATCCCTCCCTCCTTTCC
TCCTTAGGTCGTCCGCCTAGACTGCCTGGCCATCGACCCGATCGAAAACC
CCTTCAACGAAGCAGCCGCCCTCCAGCTCCTCCTACAAAACGAAGGCCTC
CTTGGAACCCTCCCGCCCTCCCTCCCTCGCCTCCATGCAGCTTTCAAAGA
CCAACACCACCTGTACCTCATGACACCCTACGCTCCTGGTGGAGACCTGT
TCAACTACCTCGCTCGTCGTCCCCCCGCCCGCCGACATCTCTCTGAACGC
AAGGCCTGTGCCTTTCTTTTGGACATCGTCGAAGCGTTGACTTACTTGAA
AAAAAACGGCATGGCGCACAGGGACGTGTCGCTCGAAAACGTGGTCTTGG
CCCTGGGCGAGGTCATGACGGAGGAAGAGGTTTGGAGGGAGGAAGCAGAA
GATTGGATTGGGAGCGCTCCTTCGGCGCTATACCCGGTAGCAGGAGGAGG
AGGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGCAGGAGGGC
AACAGCGAAGGGTGCACGACCAGTGCGTCCTCCTCCCTGCCCCCTACCCG
GAAGTCTTGCTGGGCGAGCAAGCCTTCTTGCCGACGATGCCTCACTTCTT
CCACTCCACAGGCTACGGGCCTGCCCCTCCTCCCGGCAGTCACGGTCCGA
CCCACCACCAGCAGGCTGGTCACGTCCCCATTACCGTTGGGCAAGAAATG
CGAGCCGCTGAAGCCTCGGCCCTTGAGCCTTCCCCCCCCCCTCAAGCCCA
TCACTACCGCCACCACTACTACAACGTTCTCCACCCTCCCTCCTCCTCCT
CATCCCCCTCCTACTCCTCCAACAGCTCTTCAGCCTCCCCTCCGCCCCAC
CCCTCCCTCCCTCCCCCACCCCGCCGCCATTGGCGGTGCACCCTCATCGA
CCTAGGAATGGCTTCCCGCCTGCCCGAATCCAAAGACGGCATTAAAATTC
GAAGATCCTACCATCAAAGCAGGGGCAAACCGG
back to top

Coding sequence (CDS) from alignment at scaffold_5:172221..173903-

>mRNA_2369 ID=mRNA_2369|Name=jgi.p|Nanoce1779_2|327334|organism=Nannochloropsis oceanica|type=CDS|length=2862bp|location=Sequence derived from alignment at scaffold_5:172221..173903- (Nannochloropsis oceanica)
GCTACGGGCCTGCCCCTCCTCCCGGCAGTCACGGTCCGACCCACCACCAG
CAGGCTGGTCACGTCCCCATTACCGTTGGGCAAGAAATGCGAGCCGCTGA
GTCGTCCGCCTAGACTGCCTGGCCATCGACCCGATCGAAAACCCCTTCAA
CGAAGCAGCCGCCCTCCAGCTCCTCCTACAAAACGAAGGCCTCCTTGGAA
CCCTCCCGCCCTCCCTCCCTCGCCTCCATGCAGCTTTCAAAGACCAACAC
CACCTGTACCTCATGACACCCTACGCTCCTGGTGGAGACCTGTTCAACTA
CCTCGCTCGTCGTCCCCCCGCCCGCCGACATCTCTCTGAACGCAAGGCCT
GTGCCTTTCTTTTGGACATCGTCGAAGCGTTGACTTACTTGAAAAAAAAC
GGCATGGCGCACAGGGACGTGTCGCTCGAAAACGTGGTCTTGGCCCTGGG
CGAGGTCATGACGGAGGAAGAGGTTTGGAGGGAGGAAGCAGAAGATTGGA
TTGGGAGCGCTCCTTCGGCGCTATACCCGGTAGCAGGAGGAGGAGGAGGA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGCAGGAGGGCAACAGCG
AAGGGTGCACGACCAATGGACGATAATGGCTTCGTTCCCCCACACCTTGA
AAGGATTGCGTGGGAGCGGCGGCTAGTCCGTGGCTTGGCTGGGCACACAT
TTAGTGAAACACTTTTGATCACGGAGCCATCGGCTTCTGATGGTGCTGAT
CGAGATGACATACGAGAGGGAAGGCAACCGCAACCGCGTCCCCCATGGCC
CCTGCTACGACGAGATGCATCAAGAGCCTATTTGTTGCTTCGCCTCCTGT
CCCATGACAAGCTCCATGTGGCCACGATACTGGCCTCTGAAGTTCGAGAA
GACAAGGCCACTGGCATCATGATCCAAGAAACGGGGCCATACTATGTGGT
CAAGGCTACGGGCCTGCCCCTCCTCCCGGCAGTCACGGTCCGACCCACCA
CCAGCAGGCTGGTCACGTCCCCATTACCGTTGGGCAAGAAATGCGAGCCG
CTGAGTCGTCCGCCTAGACTGCCTGGCCATCGACCCGATCGAAAACCCCT
TCAACGAAGCAGCCGCCCTCCAGCTCCTCCTACAAAACGAAGGCCTCCTT
GGAACCCTCCCGCCCTCCCTCCCTCGCCTCCATGCAGCTTTCAAAGACCA
ACACCACCTGTACCTCATGACACCCTACGCTCCTGGTGGAGACCTGTTCA
ACTACCTCGCTCGTCGTCCCCCCGCCCGCCGACATCTCTCTGAACGCAAG
GCCTGTGCCTTTCTTTTGGACATCGTCGAAGCGTTGACTTACTTGAAAAA
AAACGGCATGGCGCACAGGGACGTGTCGCTCGAAAACGTGGTCTTGGCCC
TGGGCGAGGTCATGACGGAGGAAGAGGTTTGGAGGGAGGAAGCAGAAGAT
TGGATTGGGAGCGCTCCTTCGGCGCTATACCCGGTAGCAGGAGGAGGAGG
AGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGCAGGAGGGCAAC
AGCGAAGGGTGCACGACCAATGGACGATAATGGCTTCGTTCCCCCACACC
TTGAAAGGATTGCGTGGGAGCGGCGGCTAGTCCGTGGCTTGGCTGGGCAC
ACATTTAGTGAAACACTTTTGATCACGGAGCCATCGGCTTCTGATGGTGC
TGATCGAGATGACATACGAGAGGGAAGGCAACCGCAACCGCGTCCCCCAT
GGCCCCTGCTACGACGAGATGCATCAAGAGCCTATTTGTTGCTTCGCCTC
CTGTCCCATGACAAGCTCCATGTGGCCACGATACTGGCCTCTGAAGTTCG
AGAAGACAAGGCCACTGGCATCATGATCCAAGAAACGGGGCCATACTATG
TGGTCAAGGCTACGGGCCTGCCCCTCCTCCCGGCAGTCACGGTCCGACCC
ACCACCAGCAGGCTGGTCACGTCCCCATTACCGTTGGGCAAGAAATGCGA
GCCGCTGAGTCGTCCGCCTAGACTGCCTGGCCATCGACCCGATCGAAAAC
CCCTTCAACGAAGCAGCCGCCCTCCAGCTCCTCCTACAAAACGAAGGCCT
CCTTGGAACCCTCCCGCCCTCCCTCCCTCGCCTCCATGCAGCTTTCAAAG
ACCAACACCACCTGTACCTCATGACACCCTACGCTCCTGGTGGAGACCTG
TTCAACTACCTCGCTCGTCGTCCCCCCGCCCGCCGACATCTCTCTGAACG
CAAGGCCTGTGCCTTTCTTTTGGACATCGTCGAAGCGTTGACTTACTTGA
AAAAAAACGGCATGGCGCACAGGGACGTGTCGCTCGAAAACGTGGTCTTG
GCCCTGGGCGAGGTCATGACGGAGGAAGAGGTTTGGAGGGAGGAAGCAGA
AGATTGGATTGGGAGCGCTCCTTCGGCGCTATACCCGGTAGCAGGAGGAG
GAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGCAGGAGGG
CAACAGCGAAGGGTGCACGACCAATGGACGATAATGGCTTCGTTCCCCCA
CACCTTGAAAGGATTGCGTGGGAGCGGCGGCTAGTCCGTGGCTTGGCTGG
GCACACATTTAGTGAAACACTTTTGATCACGGAGCCATCGGCTTCTGATG
GTGCTGATCGAGATGACATACGAGAGGGAAGGCAACCGCAACCGCGTCCC
CCATGGCCCCTGCTACGACGAGATGCATCAAGAGCCTATTTGTTGCTTCG
CCTCCTGTCCCATGACAAGCTCCATGTGGCCACGATACTGGCCTCTGAAG
TTCGAGAAGACAAGGCCACTGGCATCATGATCCAAGAAACGGGGCCATAC
TATGTGGTCAAG
back to top
Synonyms
Publications