jgi.p|Nanoce1779_2|580125, mRNA_2368 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580125
Unique NamemRNA_2368
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length882
Alignment locationscaffold_5:171579..172460 -

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Properties
Property NameValue
TranscriptId580211
TrackFilteredModels2
ProteinId580125
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:171579..172460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580125gene_2368Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580125mRNA_2368-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2368CDS_2368Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2368 ID=mRNA_2368|Name=jgi.p|Nanoce1779_2|580125|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
AAGCCCATCACTACCGCCACCACTACTACAACGTTCTCCACCCTCCCTCC
TCCTCCTCATCCCCCTCCTACTCCTCCAACAGCTCTTCAGCCTCCCCTCC
GCCCCACCCCTCCCTCCCTCCCCCACCCCGCCGCCATTGGCGGTGCACCC
TCATCGACCTAGGAATGGCTTCCCGCCTGCCCGAATCCAAAGACGGCATT
AAAATTCGAAGATCCTACCATCAAAGCAGGGGCAAACCGGGCTATGTGTC
CCCCGAGATCTTCTACGAGCAACCTTCTGACGGGTTTTCGTCGGATATAT
GGTCCTTGGGCGTGATACTGTACACACTCTTGACCGGCCACCCGCTTTAT
GCCAGCCCCTGGGACCCGGCGTTTGAAGCCCTAGTGGGGGGAAAGACGAG
GCGATTGATACACCATTATAAGGTAGGGTATGTGTGTGTGTGGGTGTGAG
GGTGTCTGACTCTCTCTCTCTCTTTCCCTCTCTCTCTCTTGTTCGTTGTC
TCGCCTTTTCCGAAGATCACAAACAAAGATCATACACCAAATAATCAAAA
TAAGTAATATAAGATATAGATGAACAACTAGTATGCAGTATGTATATCAG
GACAAGATATACCAAAAGTCTCACTCACGACTACCAACAAACAACGACAG
CTGAAATATGGGTGTTCCATTCACCTAACCGCTGAAGACCTCATCTGTGC
AATGCTGAATCCCTGCCCCTCCGAGCGCCCATGTCTCGCTCAAATCAAGG
CCTCCGCCTGGGTCTGTGACGTGCTTCGTGGCCGACAGGAGGAGCAGCAG
CAGCAGCAGCAGCAGCAGGAGCAGCGGCAGCAGCAGCCTGGAGAAATAGG
TAATGGAGGTGTTGCAGTAGCAGCAGCAGCAG
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protein sequence of jgi.p|Nanoce1779_2|580125

>mRNA_2368-protein ID=mRNA_2368-protein|Name=jgi.p|Nanoce1779_2|580125|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MASRLPESKDGIKIRRSYHQSRGKPGYVSPEIFYEQPSDGFSSDIWSLGV
ILYTLLTGHPLYASPWDPAFEALVGGKTRRLIHHYKVGYVCVWV*
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mRNA from alignment at scaffold_5:171579..172460-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2368 ID=mRNA_2368|Name=jgi.p|Nanoce1779_2|580125|organism=Nannochloropsis oceanica|type=mRNA|length=882bp|location=Sequence derived from alignment at scaffold_5:171579..172460- (Nannochloropsis oceanica)
AAGCCCATCACTACCGCCACCACTACTACAACGTTCTCCACCCTCCCTCC
TCCTCCTCATCCCCCTCCTACTCCTCCAACAGCTCTTCAGCCTCCCCTCC
GCCCCACCCCTCCCTCCCTCCCCCACCCCGCCGCCATTGGCGGTGCACCC
TCATCGACCTAGGAATGGCTTCCCGCCTGCCCGAATCCAAAGACGGCATT
AAAATTCGAAGATCCTACCATCAAAGCAGGGGCAAACCGGGCTATGTGTC
CCCCGAGATCTTCTACGAGCAACCTTCTGACGGGTTTTCGTCGGATATAT
GGTCCTTGGGCGTGATACTGTACACACTCTTGACCGGCCACCCGCTTTAT
GCCAGCCCCTGGGACCCGGCGTTTGAAGCCCTAGTGGGGGGAAAGACGAG
GCGATTGATACACCATTATAAGGTAGGGTATGTGTGTGTGTGGGTGTGAG
GGTGTCTGACTCTCTCTCTCTCTTTCCCTCTCTCTCTCTTGTTCGTTGTC
TCGCCTTTTCCGAAGATCACAAACAAAGATCATACACCAAATAATCAAAA
TAAGTAATATAAGATATAGATGAACAACTAGTATGCAGTATGTATATCAG
GACAAGATATACCAAAAGTCTCACTCACGACTACCAACAAACAACGACAG
CTGAAATATGGGTGTTCCATTCACCTAACCGCTGAAGACCTCATCTGTGC
AATGCTGAATCCCTGCCCCTCCGAGCGCCCATGTCTCGCTCAAATCAAGG
CCTCCGCCTGGGTCTGTGACGTGCTTCGTGGCCGACAGGAGGAGCAGCAG
CAGCAGCAGCAGCAGCAGGAGCAGCGGCAGCAGCAGCCTGGAGAAATAGG
TAATGGAGGTGTTGCAGTAGCAGCAGCAGCAG
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Coding sequence (CDS) from alignment at scaffold_5:171579..172460-

>mRNA_2368 ID=mRNA_2368|Name=jgi.p|Nanoce1779_2|580125|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at scaffold_5:171579..172460- (Nannochloropsis oceanica)
ATGGCTTCCCGCCTGCCCGAATCCAAAGACGGCATTAAAATTCGAAGATC
CTACCATCAAAGCAGGGGCAAACCGGGCTATGTGTCCCCCGAGATCTTCT
ACGAGCAACCTTCTGACGGGTTTTCGTCGGATATATGGTCCTTGGGCGTG
ATACTGTACACACTCTTGACCGGCCACCCGCTTTATGCCAGCCCCTGGGA
CCCGGCGTTTGAAGCCCTAGTGGGGGGAAAGACGAGGCGATTGATACACC
ATTATAAGGTAGGGTATGTGTGTGTGTGGGTGTGA
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Synonyms
Publications