jgi.p|Nanoce1779_2|580123, mRNA_2367 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580123
Unique NamemRNA_2367
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length688
Alignment locationscaffold_5:170626..171313 +

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Properties
Property NameValue
TranscriptId580209
TrackFilteredModels2
ProteinId580123
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:170626..171313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580123gene_2367Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580123mRNA_2367-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2367CDS_2367Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2367 ID=mRNA_2367|Name=jgi.p|Nanoce1779_2|580123|organism=Nannochloropsis oceanica|type=mRNA|length=688bp
TTGCAGTGATGCACGTTTTTCTTTTCTTTTGCACGTGCTTGCATTCGTCG
TCGTTTTGGTGAGGGTGTGGATGTGAATATGGGCTCAAGTATGATTGTGG
TCAACGTGGTGTCTTATGAGCGTAGATTTCTCCTTCTCCTTTCCACGGTC
AGCTTTTCCCCTTTCATTTTCTGCCTCTGTCCTCTTCATTTATACAATCC
TTTCGGTGTCGCATTAAAATTATATTTCTTTTTTCTTTTGGCTTTTCTCG
TGGTTTCCATATCATATTTGCCGGCTCTTTCTGGTGTTGCCCATCCATTC
CCCTTTCGCGTTCTCTCCTTAGTGCTCATACATTTCAATCAATCTAAATA
ATAAATTCGGCTTTCGCTTTCTCTCCCTTACTCATCATTCCCTCTTCTCT
TTATCTCTGTGGTGCTCCATTTCCTTTCTCCTTCTTTCTATTACTAATCC
ATTCCCCTCTCGCTTTCTTTTCCTTTCAAATCCGTTCCGTGTACTCTCTC
TCTTTATGGCGCTAATCCTATCCATATTCTATTTCCATCTCTTGATCATC
CATTACTCTTCCACTTTCTCTTTATGTCGCCAATCATATCCGTTGTAATC
TCTCTCTGGATCACCCAGTACCCTTTCACTTTTTTCCTGCTCATACATTT
CAATCATCGATTAACTCATACATTTCAATCATCGATTA
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protein sequence of jgi.p|Nanoce1779_2|580123

>mRNA_2367-protein ID=mRNA_2367-protein|Name=jgi.p|Nanoce1779_2|580123|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MGSSMIVVNVVSYERRFLLLLSTVSFSPFIFCLCPLHLYNPFGVALKLYF
FFLLAFLVVSISYLPALSGVAHPFPFRVLSLVLIHFNQSK*
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mRNA from alignment at scaffold_5:170626..171313+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2367 ID=mRNA_2367|Name=jgi.p|Nanoce1779_2|580123|organism=Nannochloropsis oceanica|type=mRNA|length=688bp|location=Sequence derived from alignment at scaffold_5:170626..171313+ (Nannochloropsis oceanica)
TTGCAGTGATGCACGTTTTTCTTTTCTTTTGCACGTGCTTGCATTCGTCG
TCGTTTTGGTGAGGGTGTGGATGTGAATATGGGCTCAAGTATGATTGTGG
TCAACGTGGTGTCTTATGAGCGTAGATTTCTCCTTCTCCTTTCCACGGTC
AGCTTTTCCCCTTTCATTTTCTGCCTCTGTCCTCTTCATTTATACAATCC
TTTCGGTGTCGCATTAAAATTATATTTCTTTTTTCTTTTGGCTTTTCTCG
TGGTTTCCATATCATATTTGCCGGCTCTTTCTGGTGTTGCCCATCCATTC
CCCTTTCGCGTTCTCTCCTTAGTGCTCATACATTTCAATCAATCTAAATA
ATAAATTCGGCTTTCGCTTTCTCTCCCTTACTCATCATTCCCTCTTCTCT
TTATCTCTGTGGTGCTCCATTTCCTTTCTCCTTCTTTCTATTACTAATCC
ATTCCCCTCTCGCTTTCTTTTCCTTTCAAATCCGTTCCGTGTACTCTCTC
TCTTTATGGCGCTAATCCTATCCATATTCTATTTCCATCTCTTGATCATC
CATTACTCTTCCACTTTCTCTTTATGTCGCCAATCATATCCGTTGTAATC
TCTCTCTGGATCACCCAGTACCCTTTCACTTTTTTCCTGCTCATACATTT
CAATCATCGATTAACTCATACATTTCAATCATCGATTA
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Coding sequence (CDS) from alignment at scaffold_5:170626..171313+

>mRNA_2367 ID=mRNA_2367|Name=jgi.p|Nanoce1779_2|580123|organism=Nannochloropsis oceanica|type=CDS|length=273bp|location=Sequence derived from alignment at scaffold_5:170626..171313+ (Nannochloropsis oceanica)
ATGGGCTCAAGTATGATTGTGGTCAACGTGGTGTCTTATGAGCGTAGATT
TCTCCTTCTCCTTTCCACGGTCAGCTTTTCCCCTTTCATTTTCTGCCTCT
GTCCTCTTCATTTATACAATCCTTTCGGTGTCGCATTAAAATTATATTTC
TTTTTTCTTTTGGCTTTTCTCGTGGTTTCCATATCATATTTGCCGGCTCT
TTCTGGTGTTGCCCATCCATTCCCCTTTCGCGTTCTCTCCTTAGTGCTCA
TACATTTCAATCAATCTAAATAA
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Synonyms
Publications