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Properties
| Property Name | Value |
|---|
| TranscriptId | 327197 |
| Track | FilteredModels2 |
| ProteinId | 327111 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:167460..169989 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2366 ID=mRNA_2366|Name=jgi.p|Nanoce1779_2|327111|organism=Nannochloropsis oceanica|type=mRNA|length=2436bp
GGGGACGACGACCACCACGAGGCAGCGACACACCGGCACTATTTATGTGT
TTGCCTTGCCTCTGTCTTGAGGGCATGCGTGGATGCGAGGAGTATGTTGC
AGTCAGACGCGAGAGCTGAAGACAGAGGTCGAAGAAGCAGCGACGATGGC
GCAGTGTGGCTGATGATATGTGATGTGCTGTCCTTGCGATATGGACTGCC
CGCGTTTCTCATATTCACACACGCTGCTCCGACAATATGACTACACACAC
CTCAAAAAATATTATTACCACCACAATAGGCGGGAAGCGCCAGAGATGCC
GGCGGTGGCCGTGCCATCCGGGAGCAGCCTGCCAGACGGCAACGAGGGCT
ATAATCGGCTGGCTCCTTCCCCACGAGATATTGAGAGGCCCAACGACAAG
CAGCACGAAGACGTGAACAACAACCTCTTTCGAAATACCGGCCGCGGCCC
TCTACTCCTCGCAGACCCTACGCAGGACGAGGACAGCGACAACGACGAAG
ACGCTCCTCCCCATGATGACAAGGACGACAATGAATCGAATAGCAACGGC
GGCGTTCCCCTCCTCCATCCCTCCACGTTCCTTCCCATCACAACCACCCC
CACAACTTCTACCACGAACCAAGCCGCCATGTGGTCGTGTGTCGCCGTCC
TGGCGAACAACATGATGGGCGCCGGTACGCTCGGCCTTCCTTTTGCAGTC
GCGCAAACAGGCTGGCTTTTGGGAGGGATACTTCTCATCGGGAGCGCTAT
AATGAGCGCTCATGGATTCCTGCTCTTGACCCTATCCGCCCACACTGTAC
AACAACGAACCCCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCCCCTCATCATCCCCTCCCACCCCCTCTGCAGCCTCCTT
CTACTCCCTCTGTCAAGCATGCATCCCTCGTTACACCTTCCTGGTCGACC
TTGCAGTAGCAATTAAGTGCTTTGGAGTCGCCATTTCGTACCTGGTAATA
GTAGGCGACCTTCTCCCTGACGTTGTCAAAGAATTCAGACAGCACGCCCT
CACCTCCTCCGCCTCCGATATATGGGAAGAGCGATGGCTCTGGATCGTGC
TTGCCTTCTTGATGGTGGTGCCTCTGAGTTTCCAGCAGAGGCTGTCGGCA
TTGAGGTATACGAGTGGAGTCTCCGTAGGGATTGTCTTGTGCCTGGCCGT
GGTTGCATTAATGTATGCCAGTGGGGCGTGGAATGCGTGTGCTGGCACAG
AGAACCCCCAAAATGGGGGCGTTGATACGCTTCCACCTGCTCTAAATGTT
GCTCGTGGTGCTGCTGGAGCACTAGACGAGGCCACGAAGGGCCTTGCGAC
AGATGCAGCAGCAGCAGCAGTAGCAGCTACTATTGCTGCTCTCACCTCCT
CCTCCTCCTCCGTCTCCTCCTCCTCCTTCTCCTCTTGCCGTGGCCGTTAC
GTCATGGCCCGTGGTGGCCATAACGCCCTACAAGTTCTCCCCATCTTCGT
CTATTCATACACAGCGCACCAAAACTTCGGCCTTCTGCTCAACGAGCTCA
AGGGCCCATCCCCCCGTCGCGTCCGCCAGACCCTTACTGCCGCCACTGGT
CTCGCCCTCCTCACCTATCTTCTCCTAGCCCAAGCCGCCTATTACGCTTA
TGGTGCCGCGCTCCAGCATGATCTTCTTTCCTCCTTCCCTGCGTCGCGCC
TATCTACATGTCTGCGGGCCGCCATGTCCTTGTTAGTCACATTCACGTAT
CCTCTCCAAGCACACCCTGCCCGCGCTTGCCTTCTGGCCCTATGGCCAGA
CACCAACAGCAGCAACAGCAGCAGTGGTAGTGATAGGAAAAACAAAGAGC
AGCTTCTCTCCTTCCGGTACACCTGCGTCACCCTCCTCTTCCTCTTCTCC
TCCCTCCTCCTCGCCCTCCTCATTCACGACCTCTCCCTCGTCCTGGAGAT
CGTCGGTGCAACCGGCTCCACCACCGTATCTTACCTCCTTCCAGGCCTCA
CCTACTTCCTCCTCCACCCTTGGTCGCATCTACGGCGGCGCTTGGCCGTG
GCCCAGGTGGTGGTGGGGATGGTGGTGATGGGCACATGCATGTTGGCCAT
TTTGATGAAGGAACGCTGAGAGGAGATAGACTGGAGGAAGGAGGGAGAGA
AGGGGGGAGAAGGAAGGGTGTGGATGTAGGGTTGGTAGGAATAGGGAGAT
CTCCTGAATGGACTCAAAAGTGCTTATGCGGGACGTGGACATAGGGACCG
AAAACATTGTACAGAGAAATTTATAAACACAAATAAGAGGTGGTTGATTG
GAAAGAAATGGAAGAAGGGGGTACTGTTGGTTAAGGCTTCTCGTGTGTTG
AGACGTAGACAAAGAAGAAACGAGTACAAATCTTTCTTGAAAATGGTAGA
GGTAAGGGACAGTGTCTTGTTTCTTTTCCTCCCCAA back to topprotein sequence of jgi.p|Nanoce1779_2|327111 >mRNA_2366-protein ID=mRNA_2366-protein|Name=jgi.p|Nanoce1779_2|327111|organism=Nannochloropsis oceanica|type=polypeptide|length=649bp
MCCPCDMDCPRFSYSHTLLRQYDYTHLKKYYYHHNRREAPEMPAVAVPSG
SSLPDGNEGYNRLAPSPRDIERPNDKQHEDVNNNLFRNTGRGPLLLADPT
QDEDSDNDEDAPPHDDKDDNESNSNGGVPLLHPSTFLPITTTPTTSTTNQ
AAMWSCVAVLANNMMGAGTLGLPFAVAQTGWLLGGILLIGSAIMSAHGFL
LLTLSAHTVQQRTPASSSSSSSSSSSSSSSPSSSPPTPSAASFYSLCQAC
IPRYTFLVDLAVAIKCFGVAISYLVIVGDLLPDVVKEFRQHALTSSASDI
WEERWLWIVLAFLMVVPLSFQQRLSALRYTSGVSVGIVLCLAVVALMYAS
GAWNACAGTENPQNGGVDTLPPALNVARGAAGALDEATKGLATDAAAAAV
AATIAALTSSSSSVSSSSFSSCRGRYVMARGGHNALQVLPIFVYSYTAHQ
NFGLLLNELKGPSPRRVRQTLTAATGLALLTYLLLAQAAYYAYGAALQHD
LLSSFPASRLSTCLRAAMSLLVTFTYPLQAHPARACLLALWPDTNSSNSS
SGSDRKNKEQLLSFRYTCVTLLFLFSSLLLALLIHDLSLVLEIVGATGST
TVSYLLPGLTYFLLHPWSHLRRRLAVAQVVVGMVVMGTCMLAILMKER* back to topmRNA from alignment at scaffold_5:167460..169989+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2366 ID=mRNA_2366|Name=jgi.p|Nanoce1779_2|327111|organism=Nannochloropsis oceanica|type=mRNA|length=2530bp|location=Sequence derived from alignment at scaffold_5:167460..169989+ (Nannochloropsis oceanica)
GGGGACGACGACCACCACGAGGCAGCGACACACCGGCACTATTTATGTGT
TTGCCTTGCCTCTGTCTTGAGGGCATGCGTGGATGCGAGGAGTATGTTGC
AGTCAGACGCGAGAGCTGAAGACAGAGGTCGAAGAAGCAGCGACGATGGC
GCAGTGTGGCTGATGATATGTGATGTGCTGTCCTTGCGATATGGACTGCC
CGCGTTTCTCATATTCACACACGCTGCTCCGACAATATGACTACACACAC
CTCAAAAAATATTATTACCACCACAATAGGCGGGAAGCGCCAGAGATGCC
GGCGGTGGCCGTGCCATCCGGGAGCAGCCTGCCAGACGGCAACGAGGTAA
CTTCCCTTACCCCCTGTCCTCTCTGCCCTCACCACCCTTCCATCCCTCTT
CCTGACATTGTCCAACCCTCTCCCCCGGCCTGTCATACAGGGCTATAATC
GGCTGGCTCCTTCCCCACGAGATATTGAGAGGCCCAACGACAAGCAGCAC
GAAGACGTGAACAACAACCTCTTTCGAAATACCGGCCGCGGCCCTCTACT
CCTCGCAGACCCTACGCAGGACGAGGACAGCGACAACGACGAAGACGCTC
CTCCCCATGATGACAAGGACGACAATGAATCGAATAGCAACGGCGGCGTT
CCCCTCCTCCATCCCTCCACGTTCCTTCCCATCACAACCACCCCCACAAC
TTCTACCACGAACCAAGCCGCCATGTGGTCGTGTGTCGCCGTCCTGGCGA
ACAACATGATGGGCGCCGGTACGCTCGGCCTTCCTTTTGCAGTCGCGCAA
ACAGGCTGGCTTTTGGGAGGGATACTTCTCATCGGGAGCGCTATAATGAG
CGCTCATGGATTCCTGCTCTTGACCCTATCCGCCCACACTGTACAACAAC
GAACCCCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCCCCTCATCATCCCCTCCCACCCCCTCTGCAGCCTCCTTCTACTC
CCTCTGTCAAGCATGCATCCCTCGTTACACCTTCCTGGTCGACCTTGCAG
TAGCAATTAAGTGCTTTGGAGTCGCCATTTCGTACCTGGTAATAGTAGGC
GACCTTCTCCCTGACGTTGTCAAAGAATTCAGACAGCACGCCCTCACCTC
CTCCGCCTCCGATATATGGGAAGAGCGATGGCTCTGGATCGTGCTTGCCT
TCTTGATGGTGGTGCCTCTGAGTTTCCAGCAGAGGCTGTCGGCATTGAGG
TATACGAGTGGAGTCTCCGTAGGGATTGTCTTGTGCCTGGCCGTGGTTGC
ATTAATGTATGCCAGTGGGGCGTGGAATGCGTGTGCTGGCACAGAGAACC
CCCAAAATGGGGGCGTTGATACGCTTCCACCTGCTCTAAATGTTGCTCGT
GGTGCTGCTGGAGCACTAGACGAGGCCACGAAGGGCCTTGCGACAGATGC
AGCAGCAGCAGCAGTAGCAGCTACTATTGCTGCTCTCACCTCCTCCTCCT
CCTCCGTCTCCTCCTCCTCCTTCTCCTCTTGCCGTGGCCGTTACGTCATG
GCCCGTGGTGGCCATAACGCCCTACAAGTTCTCCCCATCTTCGTCTATTC
ATACACAGCGCACCAAAACTTCGGCCTTCTGCTCAACGAGCTCAAGGGCC
CATCCCCCCGTCGCGTCCGCCAGACCCTTACTGCCGCCACTGGTCTCGCC
CTCCTCACCTATCTTCTCCTAGCCCAAGCCGCCTATTACGCTTATGGTGC
CGCGCTCCAGCATGATCTTCTTTCCTCCTTCCCTGCGTCGCGCCTATCTA
CATGTCTGCGGGCCGCCATGTCCTTGTTAGTCACATTCACGTATCCTCTC
CAAGCACACCCTGCCCGCGCTTGCCTTCTGGCCCTATGGCCAGACACCAA
CAGCAGCAACAGCAGCAGTGGTAGTGATAGGAAAAACAAAGAGCAGCTTC
TCTCCTTCCGGTACACCTGCGTCACCCTCCTCTTCCTCTTCTCCTCCCTC
CTCCTCGCCCTCCTCATTCACGACCTCTCCCTCGTCCTGGAGATCGTCGG
TGCAACCGGCTCCACCACCGTATCTTACCTCCTTCCAGGCCTCACCTACT
TCCTCCTCCACCCTTGGTCGCATCTACGGCGGCGCTTGGCCGTGGCCCAG
GTGGTGGTGGGGATGGTGGTGATGGGCACATGCATGTTGGCCATTTTGAT
GAAGGAACGCTGAGAGGAGATAGACTGGAGGAAGGAGGGAGAGAAGGGGG
GAGAAGGAAGGGTGTGGATGTAGGGTTGGTAGGAATAGGGAGATCTCCTG
AATGGACTCAAAAGTGCTTATGCGGGACGTGGACATAGGGACCGAAAACA
TTGTACAGAGAAATTTATAAACACAAATAAGAGGTGGTTGATTGGAAAGA
AATGGAAGAAGGGGGTACTGTTGGTTAAGGCTTCTCGTGTGTTGAGACGT
AGACAAAGAAGAAACGAGTACAAATCTTTCTTGAAAATGGTAGAGGTAAG
GGACAGTGTCTTGTTTCTTTTCCTCCCCAA back to topCoding sequence (CDS) from alignment at scaffold_5:167460..169989+ >mRNA_2366 ID=mRNA_2366|Name=jgi.p|Nanoce1779_2|327111|organism=Nannochloropsis oceanica|type=CDS|length=3894bp|location=Sequence derived from alignment at scaffold_5:167460..169989+ (Nannochloropsis oceanica)
ATGTGCTGTCCTTGCGATATGGACTGCCCGCGTTTCTCATATTCACACAC
GCTGCTCCGACAATATGACTACACACACCTCAAAAAATATTATTACCACC
ACAATAGGCGGGAAGCGCCAGAGATGCCGGCGGTGGCCGTGCCATCCGGG
AGCAGCCTGCCAGACGGCAACGAGGGCTATAATCGGCTGGCTCCTTCCCC
ACGAGATATTGAGAGGCCCAACGACAAGCAGCACGAAGACGTGAACAACA
ACCTCTTTCGAAATACCGGCCGCGGCCCTCTACTCCTCGCAGACCCTACG
CAGGACGAGGACAGCGACAACGACGAAGACGCTCCTCCCCATGATGACAA
GGACGACAATGAATCGAATAGCAACGGCGGCGTTCCCCTCCTCCATCCCT
CCACGTTCCTTCCCATCACAACCACCCCCACAACTTCTACCACGAACCAA
GCCGCCATGTGGTCGTGTGTCGCCGTCCTGGCGAACAACATGATGGGCGC
CGGTACGCTCGGCCTTCCTTTTGCAGTCGCGCAAACAGGCTGGCTTTTGG
GAGGGATACTTCTCATCGGGAGCGCTATAATGAGCGCTCATGGATTCCTG
CTCTTGACCCTATCCGCCCACACTGTACAACAACGAACCCCCGCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCATCAT
CCCCTCCCACCCCCTCTGCAGCCTCCTTCTACTCCCTCTGTCAAGCATGC
ATCCCTCGTTACACCTTCCTGGTCGACCTTGCAGTAGCAATTAAGTGCTT
TGGAGTCGCCATTTCGTACCTGGTAATAGTAGGCGACCTTCTCCCTGACG
TTGTCAAAGAATTCAGACAGCACGCCCTCACCTCCTCCGCCTCCGATATA
TGGGAAGAGCGATGGCTCTGGATCGTGCTTGCCTTCTTGATGGTGGTGCC
TCTGAGTTTCCAGCAGAGGCTGTCGGCATTGAGGTATACGAGTGGAGTCT
CCGTAGGGATTGTCTTGTGCCTGGCCGTGGTTGCATTAATGTATGCCAGT
GGGGCGTGGAATGCGTGTGCTGGCACAGAGAACCCCCAAAATGGGGGCGT
TGATACGCTTCCACCTGCTCTAAATGTTGCTCGTGGTGCTGCTGGAGCAC
TAGACGAGGCCACGAAGGGCCTTGCGACAGATGCAGCAGCAGCAGCAGTA
GCAGCTACTATTGCTGCTCTCACCTCCTCCTCCTCCTCCGTCTCCTCCTC
CTCCTTCTCCTCTTGCCGTGGCCGTTACGTCATGGCCCGTGGTGGCCATA
ACGCCCTACAAGTTCTCCCCATCTTCGTCTATTCATACACAGCGCACCAA
AACTTCGGCCTTCTGCTCAACGAGCTCAAGGGCCCATCCCCCCGTCGCGT
CCGCCAGACCCTTACTGCCGCCACTGGTCTCGCCCTCCTCACCTATCTTC
TCCTAGCCCAAGCCGCCTATTACGCTTATGGTGCCGCGCTCCAGCATGAT
CTTCTTTCCTCCTTCCCTGCGTCGCGCCTATCTACATGTCTGCGGGCCGC
CATGTCCTTGTTAGTCACATTCACGTATCCTCTCCAAGCACACCCTGCCC
GCGCTTGCCTTCTGGCCCTATGGCCAGACACCAACAGCAGCAACAGCAGC
AGTGGTAGTGATAGGAAAAACAAAGAGCAGCTTCTCTCCTTCCGGTACAC
CTGCGTCACCCTCCTCTTCCTCTTCTCCTCCCTCCTCCTCGCCCTCCTCA
TTCACGACCTCTCCCTCGTCCTGGAGATCGTCGGTGCAACCGGCTCCACC
ACCGTATCTTACCTCCTTCCAGGCCTCACCTACTTCCTCCTCCACCCTTG
GTCGCATCTACGGCGGCGCTTGGCCGTGGCCCAGGTGGTGGTGGGGATGG
TGGTGATGGGCACATGCATGTTGGCCATTTTGATGAAGGAACGCTGAATG
TGCTGTCCTTGCGATATGGACTGCCCGCGTTTCTCATATTCACACACGCT
GCTCCGACAATATGACTACACACACCTCAAAAAATATTATTACCACCACA
ATAGGCGGGAAGCGCCAGAGATGCCGGCGGTGGCCGTGCCATCCGGGAGC
AGCCTGCCAGACGGCAACGAGGGCTATAATCGGCTGGCTCCTTCCCCACG
AGATATTGAGAGGCCCAACGACAAGCAGCACGAAGACGTGAACAACAACC
TCTTTCGAAATACCGGCCGCGGCCCTCTACTCCTCGCAGACCCTACGCAG
GACGAGGACAGCGACAACGACGAAGACGCTCCTCCCCATGATGACAAGGA
CGACAATGAATCGAATAGCAACGGCGGCGTTCCCCTCCTCCATCCCTCCA
CGTTCCTTCCCATCACAACCACCCCCACAACTTCTACCACGAACCAAGCC
GCCATGTGGTCGTGTGTCGCCGTCCTGGCGAACAACATGATGGGCGCCGG
TACGCTCGGCCTTCCTTTTGCAGTCGCGCAAACAGGCTGGCTTTTGGGAG
GGATACTTCTCATCGGGAGCGCTATAATGAGCGCTCATGGATTCCTGCTC
TTGACCCTATCCGCCCACACTGTACAACAACGAACCCCCGCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCATCATCCC
CTCCCACCCCCTCTGCAGCCTCCTTCTACTCCCTCTGTCAAGCATGCATC
CCTCGTTACACCTTCCTGGTCGACCTTGCAGTAGCAATTAAGTGCTTTGG
AGTCGCCATTTCGTACCTGGTAATAGTAGGCGACCTTCTCCCTGACGTTG
TCAAAGAATTCAGACAGCACGCCCTCACCTCCTCCGCCTCCGATATATGG
GAAGAGCGATGGCTCTGGATCGTGCTTGCCTTCTTGATGGTGGTGCCTCT
GAGTTTCCAGCAGAGGCTGTCGGCATTGAGGTATACGAGTGGAGTCTCCG
TAGGGATTGTCTTGTGCCTGGCCGTGGTTGCATTAATGTATGCCAGTGGG
GCGTGGAATGCGTGTGCTGGCACAGAGAACCCCCAAAATGGGGGCGTTGA
TACGCTTCCACCTGCTCTAAATGTTGCTCGTGGTGCTGCTGGAGCACTAG
ACGAGGCCACGAAGGGCCTTGCGACAGATGCAGCAGCAGCAGCAGTAGCA
GCTACTATTGCTGCTCTCACCTCCTCCTCCTCCTCCGTCTCCTCCTCCTC
CTTCTCCTCTTGCCGTGGCCGTTACGTCATGGCCCGTGGTGGCCATAACG
CCCTACAAGTTCTCCCCATCTTCGTCTATTCATACACAGCGCACCAAAAC
TTCGGCCTTCTGCTCAACGAGCTCAAGGGCCCATCCCCCCGTCGCGTCCG
CCAGACCCTTACTGCCGCCACTGGTCTCGCCCTCCTCACCTATCTTCTCC
TAGCCCAAGCCGCCTATTACGCTTATGGTGCCGCGCTCCAGCATGATCTT
CTTTCCTCCTTCCCTGCGTCGCGCCTATCTACATGTCTGCGGGCCGCCAT
GTCCTTGTTAGTCACATTCACGTATCCTCTCCAAGCACACCCTGCCCGCG
CTTGCCTTCTGGCCCTATGGCCAGACACCAACAGCAGCAACAGCAGCAGT
GGTAGTGATAGGAAAAACAAAGAGCAGCTTCTCTCCTTCCGGTACACCTG
CGTCACCCTCCTCTTCCTCTTCTCCTCCCTCCTCCTCGCCCTCCTCATTC
ACGACCTCTCCCTCGTCCTGGAGATCGTCGGTGCAACCGGCTCCACCACC
GTATCTTACCTCCTTCCAGGCCTCACCTACTTCCTCCTCCACCCTTGGTC
GCATCTACGGCGGCGCTTGGCCGTGGCCCAGGTGGTGGTGGGGATGGTGG
TGATGGGCACATGCATGTTGGCCATTTTGATGAAGGAACGCTGA back to top
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