jgi.p|Nanoce1779_2|580109, mRNA_2364 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580109
Unique NamemRNA_2364
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1241
Alignment locationscaffold_5:161167..162407 +

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Properties
Property NameValue
TranscriptId580195
TrackFilteredModels2
ProteinId580109
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:161167..162407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580109gene_2364Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580109mRNA_2364-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2364CDS_2364Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2364 ID=mRNA_2364|Name=jgi.p|Nanoce1779_2|580109|organism=Nannochloropsis oceanica|type=mRNA|length=1241bp
GGGAGGGAGGGAGGGCGGGAAGGTGGGAGGGCAGGACCCGTGTGTGGTGG
TGGCAGAGCTGCTGGAGTTTGCATTTACCCTCGACGCCTCATCCAAGGTG
GAGGATCTGGTGCTACTGCTTGATGGAGTGGCAGCCTTGAAGCATGTAAG
GCTGGAGGAGGGGTGGGCGAGGAAGGGAGGGAGGAAAAAGAAGGGAAAAC
AGGAGGCAGAAGAGGAAAAGGAGGAGGAGGAGGAAGAGGAGGACGAGAAC
AAAGGGAAACGAGTGATGTTTCTCAATCTGTATCATTTGACCGTCTTGTT
GGCCCGGCTCATCCTCGGGCCGCCTCCGTCGTCGTCGGGATTGAAATGGT
GCGGGTACTTCTCCATGGCTGCCGTGGAGTTCGGAGGAGATATCTACTCC
CTCGCGGAACTGGAACACAATGTCCTGAGGGCCCGTGCCCCTCGTCCTCG
AGGCGCCCTCCTCCGATTCCTCCTTCCTTCCACCAAGTACCCTCCTTCCC
TCCCTCCGTCTATCCACGACTACCGCCTTAATTTCGCCATGCACTGTGGC
TCGGTCTCCTGTCCTGTCTCTGCCGTGCCCATCTATACACGGGAAGCGCT
CGAGGAGCAGCTGGAGATGATGATGCGGTGGTCCCTTGAGAGGGCGTGTC
ACCTGGGAGGGGAAGGAAGGGACGGAGGGAAGGCCGGGGGGCGGACGCTG
TATTTACCTAAAATGTGTTTTTGGTACCAAAAAGACTTTGTTCCGGGTAT
GATGTCCGCGATCTTGGCCAGACTCCCGCTCGAGAAGCAGAGGATTGTGC
GAGAGTGGATGGGTGGAGAGGGAAGGCGAGAAGGAGGGAGAGGACTGAGC
ATGAGTTTGAGTGGCCGGGAAGGAGGGGGAGGAGGGAAGGATGGAGGGTT
TACTGTGCGCTATTTACCGTTTTCGTTCGAAACGCGGGCGTTACGGAGAT
TGGATGAGGAGGAGGAGATGAGGATGCGGCCGCCAAGGGCACCAGTACTA
GGGAGGTAGGAGATGAAGAAAAGAGGGAAGGACGAATGGAAGATAAGGGA
ATGTTGAAGAATCTGGTGGTGAGGAGGAGAAGGAAAGAAGTCGGAAGAAG
AGTAGTAAGGCAAATTGATTTTTGAAAATTTATATCAAAATTTATGGTTT
CAATGTCATCAAGACCGGGATAGGGCAAAAAAGTAAATAAACGACGGCCT
TGTGCGGCGATAAACATGAACATGCCATGCCGAGACAAGAT
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protein sequence of jgi.p|Nanoce1779_2|580109

>mRNA_2364-protein ID=mRNA_2364-protein|Name=jgi.p|Nanoce1779_2|580109|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MFLNLYHLTVLLARLILGPPPSSSGLKWCGYFSMAAVEFGGDIYSLAELE
HNVLRARAPRPRGALLRFLLPSTKYPPSLPPSIHDYRLNFAMHCGSVSCP
VSAVPIYTREALEEQLEMMMRWSLERACHLGGEGRDGGKAGGRTLYLPKM
CFWYQKDFVPGMMSAILARLPLEKQRIVREWMGGEGRREGGRGLSMSLSG
REGGGGGKDGGFTVRYLPFSFETRALRRLDEEEEMRMRPPRAPVLGR*
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mRNA from alignment at scaffold_5:161167..162407+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2364 ID=mRNA_2364|Name=jgi.p|Nanoce1779_2|580109|organism=Nannochloropsis oceanica|type=mRNA|length=1241bp|location=Sequence derived from alignment at scaffold_5:161167..162407+ (Nannochloropsis oceanica)
GGGAGGGAGGGAGGGCGGGAAGGTGGGAGGGCAGGACCCGTGTGTGGTGG
TGGCAGAGCTGCTGGAGTTTGCATTTACCCTCGACGCCTCATCCAAGGTG
GAGGATCTGGTGCTACTGCTTGATGGAGTGGCAGCCTTGAAGCATGTAAG
GCTGGAGGAGGGGTGGGCGAGGAAGGGAGGGAGGAAAAAGAAGGGAAAAC
AGGAGGCAGAAGAGGAAAAGGAGGAGGAGGAGGAAGAGGAGGACGAGAAC
AAAGGGAAACGAGTGATGTTTCTCAATCTGTATCATTTGACCGTCTTGTT
GGCCCGGCTCATCCTCGGGCCGCCTCCGTCGTCGTCGGGATTGAAATGGT
GCGGGTACTTCTCCATGGCTGCCGTGGAGTTCGGAGGAGATATCTACTCC
CTCGCGGAACTGGAACACAATGTCCTGAGGGCCCGTGCCCCTCGTCCTCG
AGGCGCCCTCCTCCGATTCCTCCTTCCTTCCACCAAGTACCCTCCTTCCC
TCCCTCCGTCTATCCACGACTACCGCCTTAATTTCGCCATGCACTGTGGC
TCGGTCTCCTGTCCTGTCTCTGCCGTGCCCATCTATACACGGGAAGCGCT
CGAGGAGCAGCTGGAGATGATGATGCGGTGGTCCCTTGAGAGGGCGTGTC
ACCTGGGAGGGGAAGGAAGGGACGGAGGGAAGGCCGGGGGGCGGACGCTG
TATTTACCTAAAATGTGTTTTTGGTACCAAAAAGACTTTGTTCCGGGTAT
GATGTCCGCGATCTTGGCCAGACTCCCGCTCGAGAAGCAGAGGATTGTGC
GAGAGTGGATGGGTGGAGAGGGAAGGCGAGAAGGAGGGAGAGGACTGAGC
ATGAGTTTGAGTGGCCGGGAAGGAGGGGGAGGAGGGAAGGATGGAGGGTT
TACTGTGCGCTATTTACCGTTTTCGTTCGAAACGCGGGCGTTACGGAGAT
TGGATGAGGAGGAGGAGATGAGGATGCGGCCGCCAAGGGCACCAGTACTA
GGGAGGTAGGAGATGAAGAAAAGAGGGAAGGACGAATGGAAGATAAGGGA
ATGTTGAAGAATCTGGTGGTGAGGAGGAGAAGGAAAGAAGTCGGAAGAAG
AGTAGTAAGGCAAATTGATTTTTGAAAATTTATATCAAAATTTATGGTTT
CAATGTCATCAAGACCGGGATAGGGCAAAAAAGTAAATAAACGACGGCCT
TGTGCGGCGATAAACATGAACATGCCATGCCGAGACAAGAT
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Coding sequence (CDS) from alignment at scaffold_5:161167..162407+

>mRNA_2364 ID=mRNA_2364|Name=jgi.p|Nanoce1779_2|580109|organism=Nannochloropsis oceanica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_5:161167..162407+ (Nannochloropsis oceanica)
ATGTTTCTCAATCTGTATCATTTGACCGTCTTGTTGGCCCGGCTCATCCT
CGGGCCGCCTCCGTCGTCGTCGGGATTGAAATGGTGCGGGTACTTCTCCA
TGGCTGCCGTGGAGTTCGGAGGAGATATCTACTCCCTCGCGGAACTGGAA
CACAATGTCCTGAGGGCCCGTGCCCCTCGTCCTCGAGGCGCCCTCCTCCG
ATTCCTCCTTCCTTCCACCAAGTACCCTCCTTCCCTCCCTCCGTCTATCC
ACGACTACCGCCTTAATTTCGCCATGCACTGTGGCTCGGTCTCCTGTCCT
GTCTCTGCCGTGCCCATCTATACACGGGAAGCGCTCGAGGAGCAGCTGGA
GATGATGATGCGGTGGTCCCTTGAGAGGGCGTGTCACCTGGGAGGGGAAG
GAAGGGACGGAGGGAAGGCCGGGGGGCGGACGCTGTATTTACCTAAAATG
TGTTTTTGGTACCAAAAAGACTTTGTTCCGGGTATGATGTCCGCGATCTT
GGCCAGACTCCCGCTCGAGAAGCAGAGGATTGTGCGAGAGTGGATGGGTG
GAGAGGGAAGGCGAGAAGGAGGGAGAGGACTGAGCATGAGTTTGAGTGGC
CGGGAAGGAGGGGGAGGAGGGAAGGATGGAGGGTTTACTGTGCGCTATTT
ACCGTTTTCGTTCGAAACGCGGGCGTTACGGAGATTGGATGAGGAGGAGG
AGATGAGGATGCGGCCGCCAAGGGCACCAGTACTAGGGAGGTAG
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Synonyms
Publications