jgi.p|Nanoce1779_2|580100, mRNA_2362 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580100
Unique NamemRNA_2362
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length500
Alignment locationscaffold_5:154591..155090 +

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Properties
Property NameValue
TranscriptId580186
TrackFilteredModels2
ProteinId580100
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:154591..155090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580100gene_2362Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580100mRNA_2362-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2362CDS_2362Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2362 ID=mRNA_2362|Name=jgi.p|Nanoce1779_2|580100|organism=Nannochloropsis oceanica|type=mRNA|length=500bp
TCACCAATCATGCTCCTACGCCCAAGGCTACTAATACTACTACTGCTACT
GCTGCTGTTCTTGCCTGTCAGCGGCGAGGTATTTTTCAACCCTCCCTCCA
CTCCCCCCCCTCCCTCCCCTCCTCCTCCTCCTTCCATTCCTCGATTCCCC
CTTGCTGGAGTCATGTATGACGCTTGTATCCCTTCTCTGGTTCTCCTGTT
TCTTCTTAATTCGTCATAACCTGCTGCTGCTGCTGTTGTTGCAGGCGCCG
ATAACGAGGGGCACGGGGCGTAAGGAGGGAGGGAGGGCATGTGGCGGTTG
TAGGCGGAGTGAAAAATCCTGACCCATCCCATGCGTGTTCTGTGTCCTTG
TGGGGGGGAAGCGGTAGCGGAGACGACTACTACCGCTTTAAACAGCACAA
AAGAAAGGAGGGTAAACATGAAAGTGCGTGCCGCCGCTGAGTTCGGAGGT
AACTCCCACCCATGGGTATAGCCCCTCCTCCCCATCCTCCCTCCCTCCCT
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protein sequence of jgi.p|Nanoce1779_2|580100

>mRNA_2362-protein ID=mRNA_2362-protein|Name=jgi.p|Nanoce1779_2|580100|organism=Nannochloropsis oceanica|type=polypeptide|length=70bp
MLLRPRLLILLLLLLLFLPVSGEVFFNPPSTPPPPSPPPPPSIPRFPLAG
VMYDACIPSLVLLFLLNSS*
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mRNA from alignment at scaffold_5:154591..155090+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2362 ID=mRNA_2362|Name=jgi.p|Nanoce1779_2|580100|organism=Nannochloropsis oceanica|type=mRNA|length=500bp|location=Sequence derived from alignment at scaffold_5:154591..155090+ (Nannochloropsis oceanica)
TCACCAATCATGCTCCTACGCCCAAGGCTACTAATACTACTACTGCTACT
GCTGCTGTTCTTGCCTGTCAGCGGCGAGGTATTTTTCAACCCTCCCTCCA
CTCCCCCCCCTCCCTCCCCTCCTCCTCCTCCTTCCATTCCTCGATTCCCC
CTTGCTGGAGTCATGTATGACGCTTGTATCCCTTCTCTGGTTCTCCTGTT
TCTTCTTAATTCGTCATAACCTGCTGCTGCTGCTGTTGTTGCAGGCGCCG
ATAACGAGGGGCACGGGGCGTAAGGAGGGAGGGAGGGCATGTGGCGGTTG
TAGGCGGAGTGAAAAATCCTGACCCATCCCATGCGTGTTCTGTGTCCTTG
TGGGGGGGAAGCGGTAGCGGAGACGACTACTACCGCTTTAAACAGCACAA
AAGAAAGGAGGGTAAACATGAAAGTGCGTGCCGCCGCTGAGTTCGGAGGT
AACTCCCACCCATGGGTATAGCCCCTCCTCCCCATCCTCCCTCCCTCCCT
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Coding sequence (CDS) from alignment at scaffold_5:154591..155090+

>mRNA_2362 ID=mRNA_2362|Name=jgi.p|Nanoce1779_2|580100|organism=Nannochloropsis oceanica|type=CDS|length=210bp|location=Sequence derived from alignment at scaffold_5:154591..155090+ (Nannochloropsis oceanica)
ATGCTCCTACGCCCAAGGCTACTAATACTACTACTGCTACTGCTGCTGTT
CTTGCCTGTCAGCGGCGAGGTATTTTTCAACCCTCCCTCCACTCCCCCCC
CTCCCTCCCCTCCTCCTCCTCCTTCCATTCCTCGATTCCCCCTTGCTGGA
GTCATGTATGACGCTTGTATCCCTTCTCTGGTTCTCCTGTTTCTTCTTAA
TTCGTCATAA
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Synonyms
Publications