jgi.p|Nanoce1779_2|576630, mRNA_236 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576630
Unique Name	mRNA_236
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2001
Alignment location	scaffold_3:586902..588902 -

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Properties


Property Name	Value
TranscriptId	576716
Track	FilteredModels2
ProteinId	576630

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:586902..588902 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576630	gene_236	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576630	mRNA_236-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_236	CDS_236	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:586902..588902-
coding sequence from alignment at scaffold_3:586902..588902-

mRNA sequence

>mRNA_236 ID=mRNA_236|Name=jgi.p|Nanoce1779_2|576630|organism=Nannochloropsis oceanica|type=mRNA|length=2001bp
TGCTCACTTGTCCATATTTTCCCTTTTGCTTCTGCTCTTGCTCCTCTCGA
TCTTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGAGCGGGCATATCAAA
AATGGCAAGCTTCTGCCCTTCCGTCTTCTCCTCCTCTTCTTCATCGTCAT
CATCTTCGTAATCCTCCTCCTCTCCAACATGATTGCCAGCAAAGCTGAGC
GAAAAAGTGTGACCCCCTATTTTGTTGTCCAAAATGCTTGTGTGAGTGGC
ATCATCGCCCCCCGCACCATCCTCCTCGAAACTGTTGTCCTGCGAGTCCA
GCGAGATACGGAGGTCCTCTCCATTCGCTTTAAAGGTGGTGGTACTCGTC
GGGTCATGCAGCTGCGACATCTGCTCCTCCGCGTCCGAATCCACGTCCCC
CAGATTGATGTCCATCTTGGCCTTCTTCATACCACCCTGCTGTCGCTGCT
GATGCTGGTGCTGGTGCTGGTGCTGGCCTCGTCCACCCTCTGCATAGTGC
ATCAAAGCCTGCAGGTCACCCTCCAACTCCATGGTCCTGTCCACCCTAGC
AGCACCAGCAACAGCAGCAGATATCAGCGGCCGTGTGTTATGCATGAGGC
TCTGAAGATTCTGCTCAAGCTCCATGGTTTCCTCCCGGACACCACCTTCT
CCGCCAGCGGCAGCAGCGCCGATAATGCCCAGCTGGGACGACGTACGTTG
ATCCAGCGCCCGAAAGTTGCTTGGGGAAGAGGAACGGTCCTCCAGGTCTG
GCATCTCTTCCTCATGGCTGGTGGTTGAGGCGCCGGATGAGCGGCGACGG
CGAGAAGATGCGGTCGAGAGAGCAGGACTTACGTCCATAGCCATGGCCAT
GTCGCAATCCTGGCCCGTGTCGGCCCTCTCGTTTTCTTCCTCCCTTTGCT
CCTTCTCCTCCGCCTGCTCCAGCTTCTCGTTCAATGAATTCAATGAATTG
CCGCCGATGGATCTCCCTTCAGCCTCCACTCCCATGTTTGCACCCTCCTC
ATTATCCTCGTCTTCCACCCTGGCCCCTCCACCTCCACCACCGCGGTAGT
TCATGAATCCAGGCGAGCCTGCAGGCAGCATCAGACTCTGTCGACGCTTA
GGGCGAGGGCTCTTACTCACACGCCTCCGCTTACCATTTCCCTCCGATGC
TCCCTCGTCATCCTCCTCTTCCACCTCCTCCTCGTCCTGATAAGCTCCGT
CCTTCTTTCCCCTACCACTACTCGCAGCAGTGTCCTCGTTCCACTGAGCA
AGAATCGCAGTGTTCTCCGCTGTGACACCCGACTCACACTCCGCCGCCTC
CCTTCCTCCTCCGCCCCCACGCATGAAAATAAGGTCAACATCCCGCTTGG
TCATGGGCGTGAGCGAGTTCGAAGGCGAGCCCTTATTGAAGTAGGCGGCA
TTGGGCGATCCAAAAACCACCGATTTCCTCGTGCCGGAACCCGACAAATC
CAGGCCGGGAGAGGCAGGGGGCAGGGTCTGCGACGGGCGCTCTTTCTTGG
AGCTGAGACAGCTTCGCAAGCTTTTGAGGCTGGACCCGTGCGGGGGCAAT
GGCGGAGGAGACATAGAAAACGTCCCTCCTGCTACAGCCGGTACGCCAGT
GGGTGCCTTGATTTGCTCTGCAAGACGGAGCGACTTGCGGCCTTTCTTAC
CTTGCACTCCATCCACTCCTCCCTCTTCCACTCCCTCGGCCGGAAGATCA
GCGAGAAGCATGCCAATATCAGCCGGAGAGGCTGTGGTCCGCCTGCTGCC
TGCTGACGCCGCTGCAGGGCTCTTGGAACTGCTGCTGGCTACGACAGTGG
TCATGGTGGTCGTCCTCGTCATCACCATCGCCGCTGCAGCCGCTGTGGTA
GTGGTGCTACGCCGCTGCCCCGTCCCACCTGTCAGCTCATTGATCAGGTC
TTCCAACAGCTCTGGGTCCGCCGTCAATCGCCGAGCCAAAATGCTTGATC
GACGCCGCGCAATCGGCGACACGAAGAAGTTGGCCGTGCCCTCCCCTAGA
A

protein sequence of jgi.p|Nanoce1779_2|576630

>mRNA_236-protein ID=mRNA_236-protein|Name=jgi.p|Nanoce1779_2|576630|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MIASKAERKSVTPYFVVQNACVSGIIAPRTILLETVVLRVQRDTEVLSIR
FKGGGTRRVMQLRHLLLRVRIHVPQIDVHLGLLHTTLLSLLMLVLVLVLA
SSTLCIVHQSLQVTLQLHGPVHPSSTSNSSRYQRPCVMHEALKILLKLHG
FLPDTTFSASGSSADNAQLGRRTLIQRPKVAWGRGTVLQVWHLFLMAGG*

mRNA from alignment at scaffold_3:586902..588902-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_236 ID=mRNA_236|Name=jgi.p|Nanoce1779_2|576630|organism=Nannochloropsis oceanica|type=mRNA|length=2001bp|location=Sequence derived from alignment at scaffold_3:586902..588902- (Nannochloropsis oceanica)
TGCTCACTTGTCCATATTTTCCCTTTTGCTTCTGCTCTTGCTCCTCTCGA
TCTTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGAGCGGGCATATCAAA
AATGGCAAGCTTCTGCCCTTCCGTCTTCTCCTCCTCTTCTTCATCGTCAT
CATCTTCGTAATCCTCCTCCTCTCCAACATGATTGCCAGCAAAGCTGAGC
GAAAAAGTGTGACCCCCTATTTTGTTGTCCAAAATGCTTGTGTGAGTGGC
ATCATCGCCCCCCGCACCATCCTCCTCGAAACTGTTGTCCTGCGAGTCCA
GCGAGATACGGAGGTCCTCTCCATTCGCTTTAAAGGTGGTGGTACTCGTC
GGGTCATGCAGCTGCGACATCTGCTCCTCCGCGTCCGAATCCACGTCCCC
CAGATTGATGTCCATCTTGGCCTTCTTCATACCACCCTGCTGTCGCTGCT
GATGCTGGTGCTGGTGCTGGTGCTGGCCTCGTCCACCCTCTGCATAGTGC
ATCAAAGCCTGCAGGTCACCCTCCAACTCCATGGTCCTGTCCACCCTAGC
AGCACCAGCAACAGCAGCAGATATCAGCGGCCGTGTGTTATGCATGAGGC
TCTGAAGATTCTGCTCAAGCTCCATGGTTTCCTCCCGGACACCACCTTCT
CCGCCAGCGGCAGCAGCGCCGATAATGCCCAGCTGGGACGACGTACGTTG
ATCCAGCGCCCGAAAGTTGCTTGGGGAAGAGGAACGGTCCTCCAGGTCTG
GCATCTCTTCCTCATGGCTGGTGGTTGAGGCGCCGGATGAGCGGCGACGG
CGAGAAGATGCGGTCGAGAGAGCAGGACTTACGTCCATAGCCATGGCCAT
GTCGCAATCCTGGCCCGTGTCGGCCCTCTCGTTTTCTTCCTCCCTTTGCT
CCTTCTCCTCCGCCTGCTCCAGCTTCTCGTTCAATGAATTCAATGAATTG
CCGCCGATGGATCTCCCTTCAGCCTCCACTCCCATGTTTGCACCCTCCTC
ATTATCCTCGTCTTCCACCCTGGCCCCTCCACCTCCACCACCGCGGTAGT
TCATGAATCCAGGCGAGCCTGCAGGCAGCATCAGACTCTGTCGACGCTTA
GGGCGAGGGCTCTTACTCACACGCCTCCGCTTACCATTTCCCTCCGATGC
TCCCTCGTCATCCTCCTCTTCCACCTCCTCCTCGTCCTGATAAGCTCCGT
CCTTCTTTCCCCTACCACTACTCGCAGCAGTGTCCTCGTTCCACTGAGCA
AGAATCGCAGTGTTCTCCGCTGTGACACCCGACTCACACTCCGCCGCCTC
CCTTCCTCCTCCGCCCCCACGCATGAAAATAAGGTCAACATCCCGCTTGG
TCATGGGCGTGAGCGAGTTCGAAGGCGAGCCCTTATTGAAGTAGGCGGCA
TTGGGCGATCCAAAAACCACCGATTTCCTCGTGCCGGAACCCGACAAATC
CAGGCCGGGAGAGGCAGGGGGCAGGGTCTGCGACGGGCGCTCTTTCTTGG
AGCTGAGACAGCTTCGCAAGCTTTTGAGGCTGGACCCGTGCGGGGGCAAT
GGCGGAGGAGACATAGAAAACGTCCCTCCTGCTACAGCCGGTACGCCAGT
GGGTGCCTTGATTTGCTCTGCAAGACGGAGCGACTTGCGGCCTTTCTTAC
CTTGCACTCCATCCACTCCTCCCTCTTCCACTCCCTCGGCCGGAAGATCA
GCGAGAAGCATGCCAATATCAGCCGGAGAGGCTGTGGTCCGCCTGCTGCC
TGCTGACGCCGCTGCAGGGCTCTTGGAACTGCTGCTGGCTACGACAGTGG
TCATGGTGGTCGTCCTCGTCATCACCATCGCCGCTGCAGCCGCTGTGGTA
GTGGTGCTACGCCGCTGCCCCGTCCCACCTGTCAGCTCATTGATCAGGTC
TTCCAACAGCTCTGGGTCCGCCGTCAATCGCCGAGCCAAAATGCTTGATC
GACGCCGCGCAATCGGCGACACGAAGAAGTTGGCCGTGCCCTCCCCTAGA
A

Coding sequence (CDS) from alignment at scaffold_3:586902..588902-

>mRNA_236 ID=mRNA_236|Name=jgi.p|Nanoce1779_2|576630|organism=Nannochloropsis oceanica|type=CDS|length=600bp|location=Sequence derived from alignment at scaffold_3:586902..588902- (Nannochloropsis oceanica)
ATGATTGCCAGCAAAGCTGAGCGAAAAAGTGTGACCCCCTATTTTGTTGT
CCAAAATGCTTGTGTGAGTGGCATCATCGCCCCCCGCACCATCCTCCTCG
AAACTGTTGTCCTGCGAGTCCAGCGAGATACGGAGGTCCTCTCCATTCGC
TTTAAAGGTGGTGGTACTCGTCGGGTCATGCAGCTGCGACATCTGCTCCT
CCGCGTCCGAATCCACGTCCCCCAGATTGATGTCCATCTTGGCCTTCTTC
ATACCACCCTGCTGTCGCTGCTGATGCTGGTGCTGGTGCTGGTGCTGGCC
TCGTCCACCCTCTGCATAGTGCATCAAAGCCTGCAGGTCACCCTCCAACT
CCATGGTCCTGTCCACCCTAGCAGCACCAGCAACAGCAGCAGATATCAGC
GGCCGTGTGTTATGCATGAGGCTCTGAAGATTCTGCTCAAGCTCCATGGT
TTCCTCCCGGACACCACCTTCTCCGCCAGCGGCAGCAGCGCCGATAATGC
CCAGCTGGGACGACGTACGTTGATCCAGCGCCCGAAAGTTGCTTGGGGAA
GAGGAACGGTCCTCCAGGTCTGGCATCTCTTCCTCATGGCTGGTGGTTGA

Synonyms

Publications